Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03999

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
4,485,636	+				+0.5
4,485,636	+				+0.4
4,485,636	+				+0.6
4,485,644	-				-0.6
4,485,644	-				-1.2
4,485,713	-				-0.1
4,485,763	-				+0.4
4,485,891	-		MIT1002_03997	0.28	-1.0
4,485,938	+		MIT1002_03997	0.37	-0.2
4,485,977	+		MIT1002_03997	0.44	+1.8
4,486,078	-		MIT1002_03997	0.62	-1.3
4,486,080	+		MIT1002_03997	0.62	+1.5
4,486,088	-		MIT1002_03997	0.64	+0.4
4,486,164	-		MIT1002_03997	0.77	+0.7
4,486,204	-		MIT1002_03997	0.85	-0.7
4,486,211	+		MIT1002_03997	0.86	+0.7
4,486,211	+		MIT1002_03997	0.86	+0.4
4,486,240	-				-0.5
4,486,300	+				+1.0
4,486,408	+		MIT1002_03998	0.27	-1.0
4,486,408	+		MIT1002_03998	0.27	+0.8
4,486,408	+		MIT1002_03998	0.27	+0.3
4,486,413	+		MIT1002_03998	0.30	-0.3
4,486,416	-		MIT1002_03998	0.31	+0.3
4,486,416	-		MIT1002_03998	0.31	-0.1
4,486,416	-		MIT1002_03998	0.31	+0.3
4,486,421	-		MIT1002_03998	0.33	+1.7
4,486,426	-		MIT1002_03998	0.35	+0.4
4,486,438	+		MIT1002_03998	0.40	+0.9
4,486,440	-		MIT1002_03998	0.41	+0.1
4,486,448	+		MIT1002_03998	0.44	-1.7
4,486,448	+		MIT1002_03998	0.44	-1.3
4,486,448	+		MIT1002_03998	0.44	+0.9
4,486,456	-		MIT1002_03998	0.48	+0.3
4,486,456	-		MIT1002_03998	0.48	+0.3
4,486,456	-		MIT1002_03998	0.48	-0.4
4,486,456	-		MIT1002_03998	0.48	-2.4
4,486,456	-		MIT1002_03998	0.48	+1.3
4,486,456	-		MIT1002_03998	0.48	-1.4
4,486,465	+		MIT1002_03998	0.51	-1.7
4,486,648	+				+0.1
4,486,663	-				+0.0
4,486,675	-				-3.2
4,486,852	+		MIT1002_03999	0.22	+0.4
4,486,852	+		MIT1002_03999	0.22	-0.7
4,486,852	+		MIT1002_03999	0.22	-1.9
4,486,852	+		MIT1002_03999	0.22	-1.5
4,486,852	+		MIT1002_03999	0.22	-0.9
4,486,852	+		MIT1002_03999	0.22	-0.7
4,486,860	-		MIT1002_03999	0.22	+0.8
4,486,860	-		MIT1002_03999	0.22	+0.7
4,486,860	-		MIT1002_03999	0.22	-0.8
4,486,860	-		MIT1002_03999	0.22	-0.4
4,486,860	-		MIT1002_03999	0.22	+0.6
4,486,860	-		MIT1002_03999	0.22	-0.3
4,486,860	-		MIT1002_03999	0.22	-1.4
4,486,898	-		MIT1002_03999	0.26	+1.0
4,486,918	+		MIT1002_03999	0.28	-1.2
4,486,918	+		MIT1002_03999	0.28	+0.5
4,486,926	-		MIT1002_03999	0.29	-1.1
4,486,936	+		MIT1002_03999	0.30	-0.4
4,486,968	-		MIT1002_03999	0.33	-1.0
4,487,002	+		MIT1002_03999	0.36	-0.7
4,487,098	+		MIT1002_03999	0.45	-0.8
4,487,154	+		MIT1002_03999	0.51	-2.1
4,487,215	+		MIT1002_03999	0.57	+0.4
4,487,384	+		MIT1002_03999	0.73	-0.3
4,487,416	+		MIT1002_03999	0.76	-1.3
4,487,424	-		MIT1002_03999	0.77	-0.3
4,487,428	+		MIT1002_03999	0.77	+0.2
4,487,525	-		MIT1002_03999	0.87	+1.3
4,487,569	+				+1.4
4,487,569	+				+2.0
4,487,577	-				+0.8
4,487,584	-				-1.3
4,487,603	+				-0.6
4,487,611	-				-1.9
4,487,611	-				+0.9
4,487,611	-				-2.2
4,487,619	-				+0.7
4,487,619	-				+0.5
4,487,619	-				+1.5
4,487,619	-				+1.6
4,487,700	+				-0.4
4,487,707	+				+0.4
4,487,708	-				+1.3
4,487,806	-		MIT1002_04000	0.24	-0.9
4,487,874	+		MIT1002_04000	0.38	-1.3
4,487,881	+		MIT1002_04000	0.39	+0.1
4,487,899	+		MIT1002_04000	0.43	-1.6
4,487,907	-		MIT1002_04000	0.44	+0.4
4,487,907	-		MIT1002_04000	0.44	+0.6
4,488,002	+		MIT1002_04000	0.63	+0.3
4,488,002	+		MIT1002_04000	0.63	-0.3
4,488,002	+		MIT1002_04000	0.63	-1.7
4,488,002	+		MIT1002_04000	0.63	-0.2
4,488,002	+		MIT1002_04000	0.63	-1.0
4,488,002	+		MIT1002_04000	0.63	+0.9
4,488,002	+		MIT1002_04000	0.63	+1.4
4,488,002	+		MIT1002_04000	0.63	-0.7
4,488,002	+		MIT1002_04000	0.63	+1.2
4,488,002	+		MIT1002_04000	0.63	-0.5
4,488,002	+		MIT1002_04000	0.63	+1.8
4,488,010	-		MIT1002_04000	0.65	-2.9
4,488,010	-		MIT1002_04000	0.65	-3.3
4,488,010	-		MIT1002_04000	0.65	-0.7
4,488,010	-		MIT1002_04000	0.65	-1.1
4,488,010	-		MIT1002_04000	0.65	-1.2
4,488,010	-		MIT1002_04000	0.65	-0.1
4,488,010	-		MIT1002_04000	0.65	+0.8
4,488,010	-		MIT1002_04000	0.65	-1.8
4,488,010	-		MIT1002_04000	0.65	+0.4
4,488,010	-		MIT1002_04000	0.65	+1.3
4,488,010	-		MIT1002_04000	0.65	-0.4
4,488,010	-		MIT1002_04000	0.65	-0.9
4,488,078	+		MIT1002_04000	0.78	+0.7
4,488,148	-				-0.3
4,488,196	-				-1.1
4,488,196	-				-2.3
4,488,196	-				+1.2
4,488,196	-				-1.1
4,488,211	+				+1.8
4,488,242	+				-1.1
4,488,269	-				-0.9
4,488,291	+				+0.1
4,488,299	-				+1.8
4,488,299	-				+1.7
4,488,353	-				-0.3
4,488,356	+				+0.3
4,488,369	-		MIT1002_04001	0.10	-0.4
4,488,371	+		MIT1002_04001	0.10	+0.8
4,488,426	-		MIT1002_04001	0.13	+1.9
4,488,426	-		MIT1002_04001	0.13	+0.7
4,488,483	+		MIT1002_04001	0.16	-0.6
4,488,483	+		MIT1002_04001	0.16	+0.9
4,488,483	+		MIT1002_04001	0.16	+0.6
4,488,491	-		MIT1002_04001	0.16	-2.9
4,488,491	-		MIT1002_04001	0.16	-0.3
4,488,531	+		MIT1002_04001	0.18	+0.2
4,488,539	-		MIT1002_04001	0.19	-0.1
4,488,539	-		MIT1002_04001	0.19	-0.2
4,488,539	-		MIT1002_04001	0.19	-0.1
4,488,539	-		MIT1002_04001	0.19	+0.5
4,488,597	+		MIT1002_04001	0.22	+0.9
4,488,613	+		MIT1002_04001	0.23	-0.1