Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03910

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
4,380,875	-		MIT1002_03909	0.65	-1.8
4,380,984	-		MIT1002_03909	0.74	+0.3
4,381,032	-		MIT1002_03909	0.78	-3.7
4,381,043	-		MIT1002_03909	0.79	-2.8
4,381,055	+		MIT1002_03909	0.80	-1.8
4,381,139	+		MIT1002_03909	0.88	-3.0
4,381,139	+		MIT1002_03909	0.88	-3.6
4,381,147	-		MIT1002_03909	0.88	-1.5
4,381,155	+		MIT1002_03909	0.89	-5.5
4,381,195	+				+0.3
4,381,200	+				+1.3
4,381,200	+				-1.0
4,381,321	+				-0.8
4,381,321	+				-2.0
4,381,331	+				-0.9
4,381,339	-				-0.2
4,381,339	-				+0.1
4,381,417	+				+1.3
4,381,417	+				+0.5
4,381,473	+				-0.2
4,381,642	-				-1.0
4,381,657	+				-1.8
4,381,765	+				+0.6
4,381,782	+				-1.9
4,381,790	-				-0.1
4,381,790	-				+1.7
4,381,790	-				-0.2
4,381,790	-				+0.0
4,381,790	-				-0.3
4,381,805	+				+0.7
4,381,871	-				+0.4
4,381,940	+				+1.7
4,381,985	+				-2.1
4,382,012	+				-0.6
4,382,112	-				-0.6
4,382,144	+		MIT1002_03910	0.11	-0.5
4,382,144	+		MIT1002_03910	0.11	-0.4
4,382,152	-		MIT1002_03910	0.11	+0.2
4,382,152	-		MIT1002_03910	0.11	-0.5
4,382,206	+		MIT1002_03910	0.13	-2.0
4,382,239	+		MIT1002_03910	0.14	-1.0
4,382,239	+		MIT1002_03910	0.14	-0.2
4,382,239	+		MIT1002_03910	0.14	+1.8
4,382,239	+		MIT1002_03910	0.14	+0.2
4,382,239	+		MIT1002_03910	0.14	+2.0
4,382,247	-		MIT1002_03910	0.15	-3.0
4,382,247	-		MIT1002_03910	0.15	+0.5
4,382,247	-		MIT1002_03910	0.15	-0.8
4,382,247	-		MIT1002_03910	0.15	-2.2
4,382,247	-		MIT1002_03910	0.15	-0.1
4,382,247	-		MIT1002_03910	0.15	+0.5
4,382,247	-		MIT1002_03910	0.15	+0.9
4,382,247	-		MIT1002_03910	0.15	+0.9
4,382,247	-		MIT1002_03910	0.15	+2.8
4,382,274	-		MIT1002_03910	0.15	+0.8
4,382,276	+		MIT1002_03910	0.16	+0.7
4,382,283	+		MIT1002_03910	0.16	+0.0
4,382,283	+		MIT1002_03910	0.16	+0.7
4,382,283	+		MIT1002_03910	0.16	-0.3
4,382,284	-		MIT1002_03910	0.16	-0.3
4,382,303	+		MIT1002_03910	0.16	+1.1
4,382,320	+		MIT1002_03910	0.17	-1.3
4,382,465	-		MIT1002_03910	0.22	+1.3
4,382,536	-		MIT1002_03910	0.24	+0.3
4,382,544	-		MIT1002_03910	0.25	+0.5
4,382,546	+		MIT1002_03910	0.25	-0.4
4,382,546	+		MIT1002_03910	0.25	+0.8
4,382,555	+		MIT1002_03910	0.25	-0.9
4,382,605	+		MIT1002_03910	0.27	+0.3
4,382,613	-		MIT1002_03910	0.27	+1.3
4,382,613	-		MIT1002_03910	0.27	-2.0
4,382,669	+		MIT1002_03910	0.29	+0.2
4,382,669	+		MIT1002_03910	0.29	-0.8
4,382,677	-		MIT1002_03910	0.29	-1.1
4,382,677	-		MIT1002_03910	0.29	-0.5
4,382,711	+		MIT1002_03910	0.31	+0.3
4,382,711	+		MIT1002_03910	0.31	-0.8
4,382,719	-		MIT1002_03910	0.31	-1.3
4,382,719	-		MIT1002_03910	0.31	+1.7
4,382,759	+		MIT1002_03910	0.32	+2.6
4,382,774	-		MIT1002_03910	0.33	+0.8
4,382,774	-		MIT1002_03910	0.33	+0.7
4,382,781	-		MIT1002_03910	0.33	-0.5
4,382,809	+		MIT1002_03910	0.34	-1.3
4,382,830	+		MIT1002_03910	0.35	+1.7
4,382,838	-		MIT1002_03910	0.35	-0.1
4,382,894	+		MIT1002_03910	0.37	+1.3
4,382,999	+		MIT1002_03910	0.40	+2.3
4,383,005	-		MIT1002_03910	0.41	+0.1
4,383,005	-		MIT1002_03910	0.41	+0.9
4,383,046	-		MIT1002_03910	0.42	+0.1
4,383,132	+		MIT1002_03910	0.45	+0.7
4,383,140	-		MIT1002_03910	0.45	-0.4
4,383,171	+		MIT1002_03910	0.46	+1.0
4,383,174	+		MIT1002_03910	0.46	+0.6
4,383,176	+		MIT1002_03910	0.47	+0.3
4,383,176	+		MIT1002_03910	0.47	+0.7
4,383,176	+		MIT1002_03910	0.47	+1.6
4,383,184	-		MIT1002_03910	0.47	+2.0
4,383,238	-		MIT1002_03910	0.49	-0.7
4,383,241	+		MIT1002_03910	0.49	+0.3
4,383,257	+		MIT1002_03910	0.49	-0.4
4,383,265	-		MIT1002_03910	0.50	+0.2
4,383,351	+		MIT1002_03910	0.53	-0.6
4,383,351	+		MIT1002_03910	0.53	+0.1
4,383,353	+		MIT1002_03910	0.53	-0.1
4,383,353	+		MIT1002_03910	0.53	+0.5
4,383,353	+		MIT1002_03910	0.53	-0.4
4,383,353	+		MIT1002_03910	0.53	+0.7
4,383,359	-		MIT1002_03910	0.53	+1.3
4,383,359	-		MIT1002_03910	0.53	+0.7
4,383,359	-		MIT1002_03910	0.53	+2.5
4,383,361	-		MIT1002_03910	0.53	+0.3
4,383,361	-		MIT1002_03910	0.53	+0.3
4,383,361	-		MIT1002_03910	0.53	-1.1
4,383,361	-		MIT1002_03910	0.53	-0.2
4,383,361	-		MIT1002_03910	0.53	+0.2
4,383,396	+		MIT1002_03910	0.54	+1.3
4,383,427	+		MIT1002_03910	0.55	+0.7
4,383,438	+		MIT1002_03910	0.56	-0.4
4,383,523	+		MIT1002_03910	0.58	-0.3
4,383,523	+		MIT1002_03910	0.58	+1.1
4,383,531	-		MIT1002_03910	0.59	+0.0
4,383,531	-		MIT1002_03910	0.59	-1.9
4,383,594	+		MIT1002_03910	0.61	-1.3
4,383,690	+		MIT1002_03910	0.64	+2.1
4,383,715	+		MIT1002_03910	0.65	-1.5
4,383,785	-		MIT1002_03910	0.67	+0.0
4,383,945	+		MIT1002_03910	0.73	+0.8
4,383,978	-		MIT1002_03910	0.74	+1.3
4,384,022	+		MIT1002_03910	0.76	+1.1
4,384,030	-		MIT1002_03910	0.76	+0.2
4,384,050	+		MIT1002_03910	0.77	+0.5
4,384,068	+		MIT1002_03910	0.77	+0.1
4,384,098	-		MIT1002_03910	0.78	-1.6
4,384,144	+		MIT1002_03910	0.80	+0.8
4,384,159	+		MIT1002_03910	0.80	+0.1
4,384,195	+		MIT1002_03910	0.82	-0.4
4,384,219	+		MIT1002_03910	0.82	-0.4
4,384,227	-		MIT1002_03910	0.83	+0.1
4,384,245	-		MIT1002_03910	0.83	-0.4
4,384,258	-		MIT1002_03910	0.84	+0.1
4,384,292	-		MIT1002_03910	0.85	+0.9
4,384,300	+		MIT1002_03910	0.85	+0.8
4,384,330	+		MIT1002_03910	0.86	-0.3
4,384,330	+		MIT1002_03910	0.86	+0.7
4,384,330	+		MIT1002_03910	0.86	-0.0
4,384,330	+		MIT1002_03910	0.86	-1.2
4,384,338	-		MIT1002_03910	0.86	-0.7
4,384,338	-		MIT1002_03910	0.86	+0.2
4,384,338	-		MIT1002_03910	0.86	-1.2
4,384,338	-		MIT1002_03910	0.86	+1.3
4,384,338	-		MIT1002_03910	0.86	+0.7
4,384,338	-		MIT1002_03910	0.86	+0.8
4,384,338	-		MIT1002_03910	0.86	+0.7
4,384,498	+				-0.8
4,384,524	-				-1.2
4,384,524	-				+1.0
4,384,524	-				+0.1
4,384,524	-				-1.6
4,384,618	+				-1.3
4,384,625	-				-0.7
4,384,625	-				+0.1
4,384,625	-				-0.3
4,384,626	-				-0.8
4,384,626	-				+0.9
4,384,626	-				-0.8
4,384,637	-				-0.5
4,384,637	-				+2.1
4,384,680	+				-2.1
4,384,680	+				+0.1
4,384,828	+				+0.2
4,384,867	-				+0.1
4,384,873	+				+0.5
4,384,892	-				-0.9
4,384,917	-				-0.6
4,384,956	-				-0.6
4,385,018	+		MIT1002_03911	0.13	-3.1
4,385,020	+		MIT1002_03911	0.13	-1.2
4,385,095	-		MIT1002_03911	0.18	+0.1
4,385,132	-		MIT1002_03911	0.20	+0.4
4,385,143	-		MIT1002_03911	0.21	-0.6
4,385,179	+		MIT1002_03911	0.23	-0.2
4,385,246	+		MIT1002_03911	0.27	+0.8
4,385,340	+		MIT1002_03911	0.33	+0.7
4,385,430	+		MIT1002_03911	0.39	+2.4
4,385,454	-		MIT1002_03911	0.41	+0.1
4,385,519	-		MIT1002_03911	0.45	-2.2
4,385,521	-		MIT1002_03911	0.45	+0.7
4,385,524	+		MIT1002_03911	0.45	-2.0
4,385,548	-		MIT1002_03911	0.47	+0.2
4,385,569	-		MIT1002_03911	0.48	+2.1
4,385,576	-		MIT1002_03911	0.49	+1.3
4,385,580	+		MIT1002_03911	0.49	-0.5
4,385,580	+		MIT1002_03911	0.49	+0.9
4,385,588	-		MIT1002_03911	0.49	-0.8
4,385,588	-		MIT1002_03911	0.49	-0.3
4,385,624	-		MIT1002_03911	0.52	+1.2
4,385,626	+		MIT1002_03911	0.52	+0.3
4,385,627	-		MIT1002_03911	0.52	-0.1
4,385,645	+		MIT1002_03911	0.53	+2.8
4,385,659	+		MIT1002_03911	0.54	+0.1
4,385,676	+		MIT1002_03911	0.55	+0.4
4,385,677	+		MIT1002_03911	0.55	+0.1
4,385,677	+		MIT1002_03911	0.55	-0.4
4,385,684	-		MIT1002_03911	0.55	+0.9
4,385,685	-		MIT1002_03911	0.55	-1.1
4,385,687	+		MIT1002_03911	0.56	-1.2
4,385,687	+		MIT1002_03911	0.56	+0.2
4,385,715	+		MIT1002_03911	0.57	+0.7
4,385,716	-		MIT1002_03911	0.57	-0.2
4,385,723	-		MIT1002_03911	0.58	+0.3
4,385,730	+		MIT1002_03911	0.58	-0.8
4,385,730	+		MIT1002_03911	0.58	-3.5