Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03868

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
4,334,784	+		MIT1002_03867	0.62	-1.4
4,334,785	-		MIT1002_03867	0.63	+0.4
4,334,850	+		MIT1002_03867	0.68	-0.4
4,334,894	+		MIT1002_03867	0.72	+0.5
4,334,927	-		MIT1002_03867	0.74	-0.5
4,334,995	-		MIT1002_03867	0.80	-0.2
4,335,072	+		MIT1002_03867	0.86	-1.0
4,335,093	+		MIT1002_03867	0.88	+0.5
4,335,098	+		MIT1002_03867	0.88	-0.5
4,335,104	+		MIT1002_03867	0.89	+1.4
4,335,148	+				-0.7
4,335,158	+				+1.0
4,335,213	-				+0.9
4,335,220	+				-0.1
4,335,228	-				-0.0
4,335,228	-				+0.4
4,335,228	-				-0.0
4,335,234	+				+1.6
4,335,234	+				-0.1
4,335,234	+				-0.7
4,335,242	-				-0.6
4,335,242	-				-0.5
4,335,302	+				-0.3
4,335,311	-				+0.8
4,335,327	+				-1.7
4,335,404	-				+3.0
4,335,406	+				+0.3
4,335,406	+				-1.7
4,335,414	-				+0.1
4,335,414	-				-1.2
4,335,433	-				-1.2
4,335,433	-				-1.5
4,335,433	-				-0.2
4,335,440	+				-0.3
4,335,440	+				-1.0
4,335,458	-				+0.4
4,335,458	-				-1.4
4,335,477	-				-1.4
4,335,514	+				-1.1
4,335,722	+				+1.8
4,335,737	-				+0.2
4,335,737	-				+1.6
4,335,758	-				+0.5
4,335,758	-				-2.4
4,335,768	-				-1.0
4,335,795	+				+0.0
4,335,795	+				-0.6
4,335,795	+				-1.3
4,335,795	+				+1.9
4,335,795	+				-0.1
4,335,795	+				+0.7
4,335,803	-				-0.2
4,335,803	-				+1.0
4,335,803	-				+3.2
4,335,803	-				-1.0
4,335,810	-		MIT1002_03868	0.11	+0.5
4,335,840	+		MIT1002_03868	0.14	-1.3
4,335,848	-		MIT1002_03868	0.16	-1.0
4,335,848	-		MIT1002_03868	0.16	-1.8
4,335,853	+		MIT1002_03868	0.16	+0.3
4,335,853	-		MIT1002_03868	0.16	+3.0
4,335,910	-		MIT1002_03868	0.24	+0.6
4,335,927	+		MIT1002_03868	0.26	-0.4
4,335,935	-		MIT1002_03868	0.27	+3.2
4,335,943	+		MIT1002_03868	0.28	+0.5
4,335,951	-		MIT1002_03868	0.29	-0.7
4,335,951	-		MIT1002_03868	0.29	-0.1
4,335,951	-		MIT1002_03868	0.29	+1.8
4,335,951	-		MIT1002_03868	0.29	-1.5
4,335,951	-		MIT1002_03868	0.29	-0.4
4,335,951	-		MIT1002_03868	0.29	-1.1
4,335,953	+		MIT1002_03868	0.29	-0.5
4,335,973	+		MIT1002_03868	0.32	+0.4
4,336,032	+		MIT1002_03868	0.39	-1.9
4,336,032	+		MIT1002_03868	0.39	+1.4
4,336,040	-		MIT1002_03868	0.40	-0.2
4,336,138	-		MIT1002_03868	0.53	+0.4
4,336,213	+		MIT1002_03868	0.63	+2.9
4,336,242	-		MIT1002_03868	0.66	+0.6
4,336,250	-		MIT1002_03868	0.67	-0.9
4,336,270	+		MIT1002_03868	0.70	-0.8
4,336,278	-		MIT1002_03868	0.71	-1.8
4,336,278	-		MIT1002_03868	0.71	+0.4
4,336,284	+		MIT1002_03868	0.72	-1.4
4,336,284	+		MIT1002_03868	0.72	+0.5
4,336,323	-		MIT1002_03868	0.77	-0.5
4,336,366	-		MIT1002_03868	0.82	-1.6
4,336,366	-		MIT1002_03868	0.82	+0.3
4,336,403	+		MIT1002_03868	0.87	-2.2
4,336,463	+				-0.9
4,336,476	-				-0.4
4,336,517	+				+0.4
4,336,525	-				+0.4
4,336,536	+				-0.1
4,336,744	+		MIT1002_03869	0.21	-1.7
4,336,990	-				-0.8
4,336,995	-				+2.4
4,337,062	+				+1.2
4,337,062	+				-2.2
4,337,070	-				+0.3
4,337,128	+		MIT1002_03870	0.15	-1.2
4,337,129	-		MIT1002_03870	0.15	-0.1
4,337,207	+		MIT1002_03870	0.30	+0.1
4,337,215	-		MIT1002_03870	0.31	+1.0
4,337,233	+		MIT1002_03870	0.35	+0.9
4,337,243	-		MIT1002_03870	0.37	-2.1
4,337,258	+		MIT1002_03870	0.39	+1.7
4,337,281	-		MIT1002_03870	0.44	+0.6
4,337,281	-		MIT1002_03870	0.44	+1.0
4,337,281	-		MIT1002_03870	0.44	+0.1
4,337,317	+		MIT1002_03870	0.51	+0.8
4,337,323	-		MIT1002_03870	0.52	+0.3
4,337,347	-		MIT1002_03870	0.57	-0.8
4,337,357	-		MIT1002_03870	0.58	-0.9
4,337,392	+		MIT1002_03870	0.65	+0.1
4,337,403	+		MIT1002_03870	0.67	+0.4
4,337,409	+		MIT1002_03870	0.68	+1.0
4,337,422	-		MIT1002_03870	0.71	-0.7