Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03637

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
4,062,933	+		MIT1002_03636	0.44	+0.0
4,062,934	-		MIT1002_03636	0.44	+1.7
4,062,956	+		MIT1002_03636	0.46	+0.5
4,062,956	+		MIT1002_03636	0.46	-2.1
4,062,956	+		MIT1002_03636	0.46	-1.0
4,062,959	-		MIT1002_03636	0.46	-0.6
4,062,964	-		MIT1002_03636	0.46	-1.6
4,062,964	-		MIT1002_03636	0.46	-1.2
4,062,964	-		MIT1002_03636	0.46	-2.1
4,062,964	-		MIT1002_03636	0.46	+0.9
4,063,127	+		MIT1002_03636	0.56	+0.0
4,063,127	+		MIT1002_03636	0.56	+0.3
4,063,134	+		MIT1002_03636	0.56	-1.1
4,063,135	+		MIT1002_03636	0.56	+1.2
4,063,208	+		MIT1002_03636	0.61	+0.1
4,063,254	+		MIT1002_03636	0.63	+0.0
4,063,323	-		MIT1002_03636	0.68	+0.2
4,063,327	-		MIT1002_03636	0.68	-1.0
4,063,345	+		MIT1002_03636	0.69	-1.5
4,063,345	+		MIT1002_03636	0.69	+0.6
4,063,345	+		MIT1002_03636	0.69	-1.2
4,063,345	+		MIT1002_03636	0.69	-0.9
4,063,353	-		MIT1002_03636	0.69	-1.7
4,063,411	+		MIT1002_03636	0.73	+1.3
4,063,411	+		MIT1002_03636	0.73	-0.3
4,063,411	+		MIT1002_03636	0.73	-1.6
4,063,411	+		MIT1002_03636	0.73	-0.8
4,063,416	+		MIT1002_03636	0.73	-0.3
4,063,419	-		MIT1002_03636	0.73	-3.1
4,063,424	-		MIT1002_03636	0.74	-0.5
4,063,458	+		MIT1002_03636	0.76	-2.8
4,063,473	+		MIT1002_03636	0.77	-0.1
4,063,479	+		MIT1002_03636	0.77	-1.0
4,063,487	-		MIT1002_03636	0.77	-0.8
4,063,535	+		MIT1002_03636	0.80	+0.6
4,063,551	+		MIT1002_03636	0.81	-2.2
4,063,559	-		MIT1002_03636	0.82	-0.3
4,063,574	-		MIT1002_03636	0.83	+0.5
4,063,574	-		MIT1002_03636	0.83	-2.3
4,063,574	-		MIT1002_03636	0.83	-0.1
4,063,592	+		MIT1002_03636	0.84	-1.0
4,063,592	+		MIT1002_03636	0.84	-1.3
4,063,614	+		MIT1002_03636	0.85	-1.9
4,063,624	+		MIT1002_03636	0.86	-0.4
4,063,630	+		MIT1002_03636	0.86	+1.0
4,063,659	+		MIT1002_03636	0.88	-1.3
4,063,716	+				+1.1
4,063,716	+				+0.9
4,063,716	+				-0.7
4,063,767	+				+0.6
4,063,807	+				+0.2
4,063,824	+				-0.6
4,063,842	+				-0.5
4,063,850	-				-1.3
4,063,857	+				+0.0
4,063,866	+				-0.8
4,063,874	-				-0.1
4,063,874	-				-0.8
4,063,890	-				+0.5
4,063,890	-				-0.6
4,063,902	-				-0.2
4,063,949	-				+0.0
4,064,023	-				-0.3
4,064,025	+				-2.4
4,064,038	-				+0.8
4,064,042	+				+1.8
4,064,049	-				+0.2
4,064,118	+		MIT1002_03637	0.14	-0.6
4,064,141	-		MIT1002_03637	0.16	-0.6
4,064,169	+		MIT1002_03637	0.18	-0.0
4,064,191	-		MIT1002_03637	0.20	+1.4
4,064,199	+		MIT1002_03637	0.20	-1.4
4,064,234	-		MIT1002_03637	0.23	-1.2
4,064,234	-		MIT1002_03637	0.23	+1.1
4,064,242	-		MIT1002_03637	0.24	-2.5
4,064,245	+		MIT1002_03637	0.24	-2.9
4,064,263	-		MIT1002_03637	0.25	+0.9
4,064,282	+		MIT1002_03637	0.27	-1.9
4,064,290	-		MIT1002_03637	0.27	+0.1
4,064,290	-		MIT1002_03637	0.27	-0.8
4,064,290	-		MIT1002_03637	0.27	+1.2
4,064,319	-		MIT1002_03637	0.30	-0.5
4,064,319	-		MIT1002_03637	0.30	-0.4
4,064,319	-		MIT1002_03637	0.30	-1.0
4,064,357	+		MIT1002_03637	0.32	-1.2
4,064,416	+		MIT1002_03637	0.37	-2.2
4,064,507	+		MIT1002_03637	0.44	-0.5
4,064,515	-		MIT1002_03637	0.44	+0.9
4,064,515	-		MIT1002_03637	0.44	+0.1
4,064,516	-		MIT1002_03637	0.45	+0.1
4,064,610	+		MIT1002_03637	0.52	-1.9
4,064,628	-		MIT1002_03637	0.53	-0.3
4,064,628	-		MIT1002_03637	0.53	+0.2
4,064,693	+		MIT1002_03637	0.58	-0.2
4,064,741	+		MIT1002_03637	0.62	+1.2
4,064,743	-		MIT1002_03637	0.62	-0.1
4,064,809	+		MIT1002_03637	0.67	-0.7
4,064,810	-		MIT1002_03637	0.67	+0.1
4,064,810	-		MIT1002_03637	0.67	+1.1
4,064,823	-		MIT1002_03637	0.68	+0.4
4,064,860	+		MIT1002_03637	0.71	+1.2
4,064,899	+		MIT1002_03637	0.74	-0.6
4,064,922	-		MIT1002_03637	0.76	-0.6
4,064,924	+		MIT1002_03637	0.76	+0.7
4,065,028	-		MIT1002_03637	0.84	-0.5
4,065,038	-		MIT1002_03637	0.84	-0.1
4,065,057	+		MIT1002_03637	0.86	-0.5
4,065,057	+		MIT1002_03637	0.86	+1.3
4,065,065	-		MIT1002_03637	0.87	+0.5
4,065,101	+		MIT1002_03637	0.89	-0.6
4,065,107	+		MIT1002_03637	0.90	+1.1
4,065,107	+		MIT1002_03637	0.90	-0.8
4,065,115	-				+0.3
4,065,115	-				-0.7
4,065,115	-				-2.4
4,065,115	-				+0.5
4,065,298	+				-1.1
4,065,306	-				-1.1
4,065,306	-				+0.2
4,065,320	+				+2.3
4,065,323	-				-0.1
4,065,333	-				-0.8
4,065,381	+				+2.2
4,065,394	+				+0.5
4,065,424	-				+0.1
4,065,442	-				-2.7
4,065,535	-				-1.4
4,065,598	-				-1.7
4,065,640	+		MIT1002_03638	0.11	-3.1
4,065,648	+		MIT1002_03638	0.12	-0.8
4,065,648	+		MIT1002_03638	0.12	-2.1
4,065,648	+		MIT1002_03638	0.12	-0.3
4,065,648	+		MIT1002_03638	0.12	+1.2
4,065,648	+		MIT1002_03638	0.12	-1.4
4,065,648	+		MIT1002_03638	0.12	-2.9
4,065,656	-		MIT1002_03638	0.13	-2.2
4,065,656	-		MIT1002_03638	0.13	-1.5
4,065,656	-		MIT1002_03638	0.13	-1.2
4,065,656	-		MIT1002_03638	0.13	-0.4
4,065,656	-		MIT1002_03638	0.13	-2.3
4,065,656	-		MIT1002_03638	0.13	-1.4
4,065,668	+		MIT1002_03638	0.14	-0.3
4,065,676	-		MIT1002_03638	0.14	-2.7
4,065,683	+		MIT1002_03638	0.15	-0.7
4,065,683	+		MIT1002_03638	0.15	-2.1
4,065,683	+		MIT1002_03638	0.15	-2.9
4,065,683	-		MIT1002_03638	0.15	-1.4
4,065,691	-		MIT1002_03638	0.15	-1.8
4,065,727	-		MIT1002_03638	0.18	-2.1
4,065,729	+		MIT1002_03638	0.18	-1.6
4,065,737	-		MIT1002_03638	0.19	-1.2
4,065,737	-		MIT1002_03638	0.19	+1.0
4,065,748	+		MIT1002_03638	0.19	+1.8
4,065,748	+		MIT1002_03638	0.19	-1.2
4,065,756	-		MIT1002_03638	0.20	-0.6
4,065,756	-		MIT1002_03638	0.20	-1.3
4,065,756	-		MIT1002_03638	0.20	-2.2
4,065,881	-		MIT1002_03638	0.29	-1.8
4,065,904	-		MIT1002_03638	0.31	-2.1
4,065,922	+		MIT1002_03638	0.32	-2.0
4,065,930	+		MIT1002_03638	0.33	-1.9
4,065,966	+		MIT1002_03638	0.36	-0.7
4,065,974	-		MIT1002_03638	0.36	-1.7
4,065,992	+		MIT1002_03638	0.38	-1.3
4,065,992	+		MIT1002_03638	0.38	-0.1
4,065,998	-		MIT1002_03638	0.38	-3.0
4,066,000	-		MIT1002_03638	0.38	-0.8
4,066,007	+		MIT1002_03638	0.39	-0.7
4,066,007	+		MIT1002_03638	0.39	-2.3
4,066,007	+		MIT1002_03638	0.39	-1.0
4,066,007	+		MIT1002_03638	0.39	-0.8
4,066,022	+		MIT1002_03638	0.40	-0.8
4,066,032	+		MIT1002_03638	0.41	-1.3
4,066,032	+		MIT1002_03638	0.41	-1.9
4,066,042	-		MIT1002_03638	0.41	+1.6
4,066,135	-		MIT1002_03638	0.48	-2.6