Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03469

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,877,702	+		MIT1002_03468	0.51	+1.3
3,877,862	+		MIT1002_03468	0.66	+0.1
3,877,935	-		MIT1002_03468	0.72	+2.6
3,877,962	+		MIT1002_03468	0.75	-0.1
3,878,077	-		MIT1002_03468	0.85	-1.1
3,878,084	-		MIT1002_03468	0.86	-1.9
3,878,089	+		MIT1002_03468	0.87	-0.7
3,878,161	+				-0.3
3,878,162	-				-0.2
3,878,169	-				+0.2
3,878,236	+				+0.3
3,878,252	-				-0.8
3,878,436	-				-0.9
3,878,471	+				+1.8
3,878,554	-				-1.4
3,878,606	+				+0.7
3,878,703	-		MIT1002_03469	0.24	-1.2
3,878,706	-		MIT1002_03469	0.24	-0.8
3,878,755	-		MIT1002_03469	0.31	-0.8
3,878,769	+		MIT1002_03469	0.33	-0.2
3,878,769	+		MIT1002_03469	0.33	-1.9
3,878,777	-		MIT1002_03469	0.35	-0.4
3,878,795	+		MIT1002_03469	0.37	+1.9
3,878,803	-		MIT1002_03469	0.38	+0.9
3,878,828	-		MIT1002_03469	0.42	-1.0
3,878,911	+		MIT1002_03469	0.54	-1.1
3,878,978	+		MIT1002_03469	0.64	-0.1
3,879,030	-		MIT1002_03469	0.72	+0.2
3,879,062	-		MIT1002_03469	0.77	-0.3
3,879,095	-		MIT1002_03469	0.82	+1.2
3,879,164	-				-2.2
3,879,166	-				+0.3
3,879,169	+				-0.8
3,879,202	+				+0.0
3,879,203	+				-0.0
3,879,211	-				-1.6
3,879,213	+				+1.3
3,879,294	+				-1.9
3,879,387	-		MIT1002_03470	0.12	-1.4
3,879,406	-		MIT1002_03470	0.15	-1.1
3,879,408	+		MIT1002_03470	0.15	-0.2
3,879,440	+		MIT1002_03470	0.20	+0.6
3,879,483	+		MIT1002_03470	0.26	+0.3
3,879,492	+		MIT1002_03470	0.28	+0.5
3,879,492	-		MIT1002_03470	0.28	+1.1
3,879,550	+		MIT1002_03470	0.36	+0.2
3,879,636	+		MIT1002_03470	0.49	-0.8
3,879,690	-		MIT1002_03470	0.57	+0.3
3,879,718	+		MIT1002_03470	0.61	+3.3
3,879,736	+		MIT1002_03470	0.64	+1.2
3,879,761	-		MIT1002_03470	0.68	+0.1
3,879,887	+		MIT1002_03470	0.86	+0.7
3,879,894	-		MIT1002_03470	0.88	+3.2
3,879,948	+				-1.3
3,879,948	-				+0.6
3,879,949	-				-0.7
3,880,020	-				+0.2
3,880,100	+				+1.2