Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03461

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,868,527	+		MIT1002_03460	0.58	-1.9
3,868,536	-		MIT1002_03460	0.59	+1.2
3,868,538	+		MIT1002_03460	0.59	-0.6
3,868,546	-		MIT1002_03460	0.60	+1.5
3,868,663	-		MIT1002_03460	0.67	+0.2
3,868,727	+		MIT1002_03460	0.72	+0.2
3,868,727	+		MIT1002_03460	0.72	+0.2
3,868,802	+		MIT1002_03460	0.77	+0.6
3,868,810	-		MIT1002_03460	0.77	+0.6
3,868,844	+		MIT1002_03460	0.79	+1.2
3,868,905	-		MIT1002_03460	0.83	+1.2
3,868,915	+		MIT1002_03460	0.84	-0.3
3,868,930	+		MIT1002_03460	0.85	-0.5
3,868,933	-		MIT1002_03460	0.85	+0.4
3,868,937	+		MIT1002_03460	0.86	+1.8
3,868,937	+		MIT1002_03460	0.86	+2.7
3,868,976	-		MIT1002_03460	0.88	-1.1
3,869,050	+				-0.6
3,869,154	+				+0.4
3,869,211	-				-0.3
3,869,267	+				-0.2
3,869,280	+				-1.6
3,869,287	+				+0.5
3,869,328	+				-0.3
3,869,425	-				+1.0
3,869,529	+				-0.4
3,869,529	+				-0.6
3,869,529	+				-0.8
3,869,537	-				+0.7
3,869,537	-				-0.2
3,869,653	+				-1.9
3,869,653	-				+0.1
3,869,671	-				-1.2
3,869,671	-				+0.0
3,869,764	-		MIT1002_03461	0.11	-0.2
3,869,766	+		MIT1002_03461	0.12	-0.5
3,869,821	+		MIT1002_03461	0.14	-2.3
3,869,829	-		MIT1002_03461	0.14	+0.9
3,869,829	-		MIT1002_03461	0.14	+0.3
3,869,829	-		MIT1002_03461	0.14	-1.0
3,869,917	+		MIT1002_03461	0.18	-1.0
3,869,917	+		MIT1002_03461	0.18	-0.7
3,869,917	+		MIT1002_03461	0.18	-0.8
3,869,925	-		MIT1002_03461	0.18	+0.7
3,869,925	-		MIT1002_03461	0.18	+1.2
3,869,925	-		MIT1002_03461	0.18	+1.3
3,869,937	+		MIT1002_03461	0.19	-0.2
3,869,937	-		MIT1002_03461	0.19	-2.4
3,869,945	-		MIT1002_03461	0.19	+0.6
3,870,081	+		MIT1002_03461	0.25	+1.2
3,870,097	-		MIT1002_03461	0.26	-2.6
3,870,134	+		MIT1002_03461	0.27	-0.1
3,870,144	+		MIT1002_03461	0.28	-0.0
3,870,152	-		MIT1002_03461	0.28	-1.1
3,870,152	-		MIT1002_03461	0.28	-0.9
3,870,207	+		MIT1002_03461	0.31	-0.1
3,870,208	-		MIT1002_03461	0.31	+0.3
3,870,211	+		MIT1002_03461	0.31	+1.5
3,870,377	+		MIT1002_03461	0.38	-1.2
3,870,392	-		MIT1002_03461	0.39	-2.3
3,870,412	+		MIT1002_03461	0.39	-2.3
3,870,412	+		MIT1002_03461	0.39	+0.2
3,870,520	-		MIT1002_03461	0.44	-0.3
3,870,567	-		MIT1002_03461	0.46	+1.0
3,870,577	-		MIT1002_03461	0.47	+0.3
3,870,577	-		MIT1002_03461	0.47	-0.4
3,870,602	+		MIT1002_03461	0.48	+0.5
3,870,616	+		MIT1002_03461	0.48	-1.5
3,870,616	+		MIT1002_03461	0.48	+1.2
3,870,616	+		MIT1002_03461	0.48	-0.4
3,870,616	+		MIT1002_03461	0.48	-0.3
3,870,616	+		MIT1002_03461	0.48	-1.0
3,870,624	-		MIT1002_03461	0.49	+0.1
3,870,624	-		MIT1002_03461	0.49	-2.5
3,870,743	+		MIT1002_03461	0.54	-0.7
3,870,743	+		MIT1002_03461	0.54	-0.7
3,870,751	-		MIT1002_03461	0.54	-1.1
3,870,839	-		MIT1002_03461	0.58	-0.4
3,870,839	-		MIT1002_03461	0.58	+1.0
3,870,875	-		MIT1002_03461	0.59	+0.5
3,870,902	+		MIT1002_03461	0.61	-0.2
3,870,902	+		MIT1002_03461	0.61	+0.8
3,871,023	-		MIT1002_03461	0.66	+0.3
3,871,113	-		MIT1002_03461	0.70	+0.9
3,871,173	-		MIT1002_03461	0.72	-0.5
3,871,204	-		MIT1002_03461	0.74	-0.2
3,871,222	-		MIT1002_03461	0.74	-0.6
3,871,350	+		MIT1002_03461	0.80	-0.0
3,871,358	-		MIT1002_03461	0.80	-0.1
3,871,394	+		MIT1002_03461	0.82	+0.7
3,871,435	+		MIT1002_03461	0.84	+1.7
3,871,442	+		MIT1002_03461	0.84	+0.0
3,871,443	-		MIT1002_03461	0.84	-0.8
3,871,443	-		MIT1002_03461	0.84	-0.2
3,871,450	+		MIT1002_03461	0.84	-2.1
3,871,488	-		MIT1002_03461	0.86	-1.4
3,871,502	+		MIT1002_03461	0.86	+0.9
3,871,510	-		MIT1002_03461	0.87	-0.5
3,871,614	-				+0.6
3,871,614	-				-1.8
3,871,614	-				+0.0
3,871,711	+				+0.1
3,871,719	-				-0.1
3,871,733	+				-1.8
3,871,750	+				+0.4
3,871,868	-				+0.5
3,871,868	-				+0.5
3,871,883	+				-1.1
3,871,916	+				-0.5
3,871,932	-				+0.6
3,871,940	+				-2.5
3,871,948	-				+0.3
3,871,948	-				-0.2
3,872,001	-				-0.8
3,872,001	-				+1.4
3,872,013	-				-0.0
3,872,019	+				+1.8
3,872,054	+				+0.6
3,872,093	+				+1.0
3,872,159	-				-0.0
3,872,174	+				+0.5
3,872,212	-				-1.5
3,872,336	-		MIT1002_03462	0.14	-0.6
3,872,336	-		MIT1002_03462	0.14	+0.8
3,872,578	+		MIT1002_03462	0.30	-0.5
3,872,583	+		MIT1002_03462	0.31	+1.0
3,872,583	+		MIT1002_03462	0.31	-1.8
3,872,583	+		MIT1002_03462	0.31	-1.1
3,872,591	-		MIT1002_03462	0.31	-0.1
3,872,591	-		MIT1002_03462	0.31	-0.7
3,872,648	-		MIT1002_03462	0.35	-0.2
3,872,650	-		MIT1002_03462	0.35	+1.2
3,872,767	+		MIT1002_03462	0.43	-0.7
3,872,780	-		MIT1002_03462	0.44	-0.1
3,872,780	-		MIT1002_03462	0.44	+0.6
3,872,790	-		MIT1002_03462	0.44	-0.1
3,872,810	+		MIT1002_03462	0.46	+0.8
3,872,810	+		MIT1002_03462	0.46	-1.4