Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03448

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,854,257	+		MIT1002_03447	0.19	+0.8
3,854,319	+		MIT1002_03447	0.25	-1.7
3,854,321	+		MIT1002_03447	0.25	-1.1
3,854,327	-		MIT1002_03447	0.25	-1.2
3,854,327	-		MIT1002_03447	0.25	-2.7
3,854,329	+		MIT1002_03447	0.26	+2.3
3,854,362	-		MIT1002_03447	0.29	+0.2
3,854,500	-		MIT1002_03447	0.42	+1.3
3,854,527	+		MIT1002_03447	0.44	-0.0
3,854,527	+		MIT1002_03447	0.44	-0.1
3,854,527	+		MIT1002_03447	0.44	-1.3
3,854,535	-		MIT1002_03447	0.45	+0.1
3,854,535	-		MIT1002_03447	0.45	-1.3
3,854,540	-		MIT1002_03447	0.46	-0.4
3,854,543	+		MIT1002_03447	0.46	+0.0
3,854,543	+		MIT1002_03447	0.46	-0.5
3,854,571	+		MIT1002_03447	0.49	-1.7
3,854,600	-		MIT1002_03447	0.51	-1.3
3,854,600	-		MIT1002_03447	0.51	+1.2
3,854,613	-		MIT1002_03447	0.53	+1.2
3,854,613	-		MIT1002_03447	0.53	-0.2
3,854,621	-		MIT1002_03447	0.53	-0.0
3,854,733	-		MIT1002_03447	0.64	+0.6
3,854,733	-		MIT1002_03447	0.64	+0.5
3,854,733	-		MIT1002_03447	0.64	-0.1
3,854,733	-		MIT1002_03447	0.64	-0.8
3,854,748	-		MIT1002_03447	0.65	+0.6
3,854,755	-		MIT1002_03447	0.66	+0.3
3,854,787	+		MIT1002_03447	0.69	+1.6
3,854,915	-		MIT1002_03447	0.81	+0.8
3,854,940	+		MIT1002_03447	0.84	-0.7
3,854,948	-		MIT1002_03447	0.84	-0.2
3,854,948	-		MIT1002_03447	0.84	-0.8
3,854,992	-		MIT1002_03447	0.89	+1.3
3,855,002	-		MIT1002_03447	0.90	-1.1
3,855,052	-				-0.9
3,855,105	+				-0.5
3,855,281	-				-1.6
3,855,311	+				+0.9
3,855,340	-				+0.9
3,855,352	-				-0.0
3,855,359	-				-1.2
3,855,360	-				-1.2
3,855,367	-				+0.6
3,855,404	-		MIT1002_03448	0.12	+0.7
3,855,451	-		MIT1002_03448	0.14	+1.0
3,855,459	-		MIT1002_03448	0.15	+0.6
3,855,490	-		MIT1002_03448	0.17	+0.0
3,855,585	+		MIT1002_03448	0.22	-0.9
3,855,585	+		MIT1002_03448	0.22	-0.8
3,855,593	-		MIT1002_03448	0.23	+1.0
3,855,640	-		MIT1002_03448	0.25	-1.1
3,855,773	-		MIT1002_03448	0.33	+1.2
3,855,843	+		MIT1002_03448	0.37	-0.8
3,855,843	+		MIT1002_03448	0.37	-0.8
3,855,927	-		MIT1002_03448	0.42	+0.5
3,855,946	+		MIT1002_03448	0.43	-0.2
3,855,986	+		MIT1002_03448	0.46	-0.5
3,855,994	-		MIT1002_03448	0.46	+0.1
3,856,081	-		MIT1002_03448	0.51	-1.7
3,856,090	-		MIT1002_03448	0.52	-0.7
3,856,182	-		MIT1002_03448	0.57	-0.0
3,856,182	-		MIT1002_03448	0.57	+1.0
3,856,200	+		MIT1002_03448	0.58	+0.3
3,856,203	-		MIT1002_03448	0.58	+0.3
3,856,264	+		MIT1002_03448	0.62	-2.3
3,856,280	-		MIT1002_03448	0.63	-1.2
3,856,337	+		MIT1002_03448	0.66	-1.2
3,856,337	+		MIT1002_03448	0.66	-3.8
3,856,453	+		MIT1002_03448	0.73	+0.9
3,856,495	+		MIT1002_03448	0.76	+1.2
3,856,530	-		MIT1002_03448	0.78	-0.8
3,856,579	+		MIT1002_03448	0.81	-0.1
3,856,582	-		MIT1002_03448	0.81	-0.8
3,856,582	-		MIT1002_03448	0.81	+0.5
3,856,584	+		MIT1002_03448	0.81	-1.6
3,856,584	+		MIT1002_03448	0.81	+1.0
3,856,587	-		MIT1002_03448	0.81	-0.1
3,856,592	+		MIT1002_03448	0.81	-0.9
3,856,592	-		MIT1002_03448	0.81	+0.6
3,856,604	+		MIT1002_03448	0.82	-0.5
3,856,659	-		MIT1002_03448	0.85	-1.6
3,856,707	-		MIT1002_03448	0.88	-0.5
3,856,714	-		MIT1002_03448	0.89	-0.7
3,856,733	+		MIT1002_03448	0.90	-1.3
3,856,871	+				-0.6
3,857,068	+		MIT1002_03449	0.11	-0.4
3,857,076	-		MIT1002_03449	0.12	-0.6
3,857,076	-		MIT1002_03449	0.12	+0.8
3,857,092	+		MIT1002_03449	0.13	+0.9
3,857,136	+		MIT1002_03449	0.16	-2.5
3,857,154	+		MIT1002_03449	0.17	+1.9
3,857,162	-		MIT1002_03449	0.18	+0.0
3,857,243	-		MIT1002_03449	0.24	-1.3
3,857,345	+		MIT1002_03449	0.31	-0.3
3,857,352	+		MIT1002_03449	0.31	+0.2
3,857,352	-		MIT1002_03449	0.31	-0.3
3,857,461	-		MIT1002_03449	0.39	-1.6
3,857,610	+		MIT1002_03449	0.49	-1.2
3,857,618	-		MIT1002_03449	0.50	-0.2
3,857,662	+		MIT1002_03449	0.53	+0.3
3,857,662	+		MIT1002_03449	0.53	-1.2
3,857,662	+		MIT1002_03449	0.53	+0.2
3,857,662	+		MIT1002_03449	0.53	+1.1
3,857,670	-		MIT1002_03449	0.54	-0.1
3,857,670	-		MIT1002_03449	0.54	-0.1
3,857,670	-		MIT1002_03449	0.54	+0.3
3,857,670	-		MIT1002_03449	0.54	+1.8
3,857,670	-		MIT1002_03449	0.54	-0.2
3,857,686	-		MIT1002_03449	0.55	-1.1
3,857,694	-		MIT1002_03449	0.55	+3.5
3,857,699	-		MIT1002_03449	0.56	-1.7
3,857,754	+		MIT1002_03449	0.59	+0.9
3,857,866	-		MIT1002_03449	0.67	-0.6
3,857,870	+		MIT1002_03449	0.68	-0.8
3,857,878	-		MIT1002_03449	0.68	-0.7
3,857,878	-		MIT1002_03449	0.68	+0.5