Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03414

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,815,756	-		MIT1002_03413	0.44	-0.1
3,815,792	+		MIT1002_03413	0.46	-0.7
3,815,901	+		MIT1002_03413	0.52	+1.2
3,816,015	-		MIT1002_03413	0.59	-0.7
3,816,017	-		MIT1002_03413	0.59	+1.2
3,816,081	+		MIT1002_03413	0.63	-1.0
3,816,081	+		MIT1002_03413	0.63	+1.6
3,816,120	+		MIT1002_03413	0.65	-1.2
3,816,238	+		MIT1002_03413	0.72	+1.6
3,816,322	+		MIT1002_03413	0.76	+1.2
3,816,358	+		MIT1002_03413	0.78	+0.8
3,816,653	+				+1.5
3,816,653	+				-0.4
3,816,660	+				-0.6
3,816,661	-				-0.4
3,816,661	-				+0.0
3,816,697	+				-1.2
3,816,736	-				-3.1
3,816,761	-				+0.0
3,816,776	+				-1.8
3,816,786	+				-1.5
3,816,786	+				-0.2
3,816,794	-				-0.2
3,816,935	+		MIT1002_03414	0.37	+2.0
3,816,935	+		MIT1002_03414	0.37	-3.0
3,816,943	-		MIT1002_03414	0.39	-1.8
3,816,954	+		MIT1002_03414	0.41	+0.3
3,816,954	+		MIT1002_03414	0.41	-1.7
3,816,962	-		MIT1002_03414	0.43	-1.4
3,817,004	+		MIT1002_03414	0.51	-1.6
3,817,111	+		MIT1002_03414	0.73	-0.9
3,817,126	-		MIT1002_03414	0.76	+0.5
3,817,178	-		MIT1002_03414	0.87	-2.0
3,817,295	+				+1.1
3,817,297	+				-0.3
3,817,303	-				+1.4
3,817,303	-				+0.2
3,817,305	-				+0.1
3,817,305	-				-0.8
3,817,491	+		MIT1002_03415	0.11	-1.6
3,817,507	+		MIT1002_03415	0.12	-0.6
3,817,517	-		MIT1002_03415	0.13	-0.6
3,817,529	+		MIT1002_03415	0.13	+0.8
3,817,753	-		MIT1002_03415	0.24	-0.9
3,817,834	+		MIT1002_03415	0.28	-1.1
3,817,850	-		MIT1002_03415	0.28	+1.6
3,817,946	-		MIT1002_03415	0.33	+1.0
3,817,969	+		MIT1002_03415	0.34	+1.7
3,817,983	+		MIT1002_03415	0.35	+2.0
3,817,983	+		MIT1002_03415	0.35	+0.3
3,817,991	-		MIT1002_03415	0.35	-1.1
3,818,006	+		MIT1002_03415	0.36	+1.4
3,818,006	+		MIT1002_03415	0.36	+0.2
3,818,014	-		MIT1002_03415	0.36	-0.6
3,818,024	-		MIT1002_03415	0.36	-1.9
3,818,072	+		MIT1002_03415	0.39	+0.5
3,818,235	+		MIT1002_03415	0.46	+1.0