Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03389

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,790,148	+		MIT1002_03388	0.45	-1.4
3,790,148	+		MIT1002_03388	0.45	-0.8
3,790,156	-		MIT1002_03388	0.46	+1.4
3,790,168	+		MIT1002_03388	0.47	+0.9
3,790,192	+		MIT1002_03388	0.50	-0.2
3,790,207	+		MIT1002_03388	0.51	+2.1
3,790,215	-		MIT1002_03388	0.52	+0.1
3,790,263	+		MIT1002_03388	0.56	+0.8
3,790,273	+		MIT1002_03388	0.57	+0.6
3,790,329	+		MIT1002_03388	0.62	+0.1
3,790,329	+		MIT1002_03388	0.62	+0.6
3,790,475	+		MIT1002_03388	0.76	+0.6
3,790,475	+		MIT1002_03388	0.76	+0.3
3,790,475	+		MIT1002_03388	0.76	-0.1
3,790,475	+		MIT1002_03388	0.76	+0.1
3,790,483	-		MIT1002_03388	0.76	+0.6
3,790,483	-		MIT1002_03388	0.76	-1.9
3,790,483	-		MIT1002_03388	0.76	+0.3
3,790,607	+		MIT1002_03388	0.88	-0.9
3,790,616	+		MIT1002_03388	0.89	+0.3
3,790,895	-				-0.3
3,791,019	+				-0.6
3,791,151	+				+0.2
3,791,164	+				-0.3
3,791,172	-				+0.8
3,791,289	-		MIT1002_03389	0.12	-1.0
3,791,310	+		MIT1002_03389	0.14	+0.4
3,791,315	+		MIT1002_03389	0.14	+2.1
3,791,333	+		MIT1002_03389	0.16	+0.2
3,791,382	+		MIT1002_03389	0.20	-1.3
3,791,385	+		MIT1002_03389	0.20	+2.1
3,791,473	+		MIT1002_03389	0.28	+0.3
3,791,473	+		MIT1002_03389	0.28	-0.7
3,791,497	+		MIT1002_03389	0.30	-0.3
3,791,503	+		MIT1002_03389	0.31	-0.1
3,791,578	+		MIT1002_03389	0.37	-1.5
3,791,603	+		MIT1002_03389	0.39	+0.2
3,791,621	-		MIT1002_03389	0.41	-1.3
3,791,628	-		MIT1002_03389	0.41	+0.7
3,791,639	+		MIT1002_03389	0.42	-0.6
3,791,695	-		MIT1002_03389	0.47	-0.2
3,791,719	-		MIT1002_03389	0.49	+0.3
3,791,743	+		MIT1002_03389	0.51	-0.4
3,791,749	-		MIT1002_03389	0.52	+0.8
3,791,749	-		MIT1002_03389	0.52	+1.3
3,791,749	-		MIT1002_03389	0.52	+1.3
3,791,769	+		MIT1002_03389	0.53	-0.9
3,791,777	+		MIT1002_03389	0.54	-1.3
3,791,777	+		MIT1002_03389	0.54	-1.1
3,791,777	+		MIT1002_03389	0.54	+0.5
3,791,785	-		MIT1002_03389	0.55	+1.1
3,791,785	-		MIT1002_03389	0.55	-0.5
3,791,815	+		MIT1002_03389	0.57	+0.9
3,791,815	+		MIT1002_03389	0.57	-1.2
3,791,823	-		MIT1002_03389	0.58	+0.4
3,791,823	-		MIT1002_03389	0.58	-0.4
3,791,851	+		MIT1002_03389	0.60	+0.4
3,791,851	+		MIT1002_03389	0.60	-0.4
3,791,851	+		MIT1002_03389	0.60	+0.2
3,791,851	+		MIT1002_03389	0.60	-1.1
3,791,859	-		MIT1002_03389	0.61	-1.9
3,791,859	-		MIT1002_03389	0.61	-0.6
3,791,859	-		MIT1002_03389	0.61	+1.1
3,791,861	+		MIT1002_03389	0.61	-1.1
3,791,869	-		MIT1002_03389	0.62	+0.3
3,791,869	-		MIT1002_03389	0.62	+0.2
3,791,886	+		MIT1002_03389	0.63	-0.1
3,791,886	+		MIT1002_03389	0.63	-1.6
3,791,890	-		MIT1002_03389	0.64	+0.2
3,791,930	-		MIT1002_03389	0.67	-1.2
3,792,001	+		MIT1002_03389	0.73	-0.9
3,792,048	+		MIT1002_03389	0.77	-2.8
3,792,064	+		MIT1002_03389	0.79	-0.2
3,792,073	+		MIT1002_03389	0.79	-0.6
3,792,073	+		MIT1002_03389	0.79	+0.2
3,792,073	+		MIT1002_03389	0.79	+0.2
3,792,081	-		MIT1002_03389	0.80	-0.0
3,792,081	-		MIT1002_03389	0.80	-0.3
3,792,081	-		MIT1002_03389	0.80	-1.3
3,792,081	-		MIT1002_03389	0.80	-0.3
3,792,081	-		MIT1002_03389	0.80	-2.6
3,792,103	+		MIT1002_03389	0.82	-0.3
3,792,117	-		MIT1002_03389	0.83	+0.3
3,792,126	+		MIT1002_03389	0.84	+1.7
3,792,158	+		MIT1002_03389	0.87	+0.4
3,792,166	-		MIT1002_03389	0.87	+0.2
3,792,176	+		MIT1002_03389	0.88	-1.0
3,792,188	+		MIT1002_03389	0.89	-0.2
3,792,188	+		MIT1002_03389	0.89	-0.8
3,792,188	+		MIT1002_03389	0.89	-2.2
3,792,196	-				-0.7
3,792,200	+				-0.4
3,792,201	+				+0.3
3,792,201	+				-2.0
3,792,201	+				+0.4
3,792,210	+				-0.4
3,792,264	+				-0.6
3,792,301	+				+0.6
3,792,301	+				-1.4
3,792,301	+				-0.0
3,792,301	+				+0.1
3,792,301	+				+0.9
3,792,301	+				+0.6
3,792,301	+				-0.0
3,792,301	+				+1.6
3,792,301	+				+1.1
3,792,305	-				+0.6
3,792,309	-				-2.3
3,792,309	-				+0.3
3,792,309	-				-0.9
3,792,309	-				+1.1
3,792,309	-				-1.1
3,792,309	-				-0.9
3,792,309	-				+0.1
3,792,309	-				-0.3
3,792,309	-				+0.7
3,792,309	-				+0.3
3,792,309	-				-0.2
3,792,309	-				+0.5
3,792,309	-				+1.3
3,792,309	-				+0.6
3,792,309	-				+0.3
3,792,309	-				-0.1
3,792,345	-				-0.1
3,792,380	+				-0.8
3,792,388	-				+2.8
3,792,408	-		MIT1002_03390	0.12	+1.0
3,792,451	+		MIT1002_03390	0.18	+0.6
3,792,451	+		MIT1002_03390	0.18	+0.1
3,792,451	+		MIT1002_03390	0.18	+1.1
3,792,459	-		MIT1002_03390	0.19	-0.9
3,792,459	-		MIT1002_03390	0.19	-1.1
3,792,459	-		MIT1002_03390	0.19	+0.7
3,792,510	+		MIT1002_03390	0.27	+0.0
3,792,548	-		MIT1002_03390	0.32	-1.7
3,792,553	+		MIT1002_03390	0.33	+1.1
3,792,595	+		MIT1002_03390	0.39	+1.3
3,792,691	+		MIT1002_03390	0.54	-0.2
3,792,699	-		MIT1002_03390	0.55	+1.6
3,792,699	-		MIT1002_03390	0.55	-1.6
3,792,699	-		MIT1002_03390	0.55	+0.6
3,792,737	-		MIT1002_03390	0.61	+1.1
3,792,745	+		MIT1002_03390	0.62	-0.9
3,792,753	+		MIT1002_03390	0.63	-0.9
3,792,753	-		MIT1002_03390	0.63	+0.3
3,792,755	+		MIT1002_03390	0.63	-0.3
3,792,759	+		MIT1002_03390	0.64	-0.7
3,792,759	+		MIT1002_03390	0.64	-0.4
3,792,767	-		MIT1002_03390	0.65	+0.7
3,792,767	-		MIT1002_03390	0.65	+1.0
3,792,777	-		MIT1002_03390	0.67	-0.7
3,792,846	-		MIT1002_03390	0.77	+2.7
3,792,849	+		MIT1002_03390	0.77	+0.6
3,792,905	-		MIT1002_03390	0.86	+0.5
3,792,906	+		MIT1002_03390	0.86	-0.2
3,793,201	+				+1.0
3,793,210	-				-0.5
3,793,212	+				-0.5
3,793,220	-				+0.8
3,793,223	-				+0.2
3,793,223	-				-0.4
3,793,269	-		MIT1002_03391	0.15	+1.1
3,793,285	+		MIT1002_03391	0.17	+1.1
3,793,292	+		MIT1002_03391	0.17	+2.3
3,793,292	+		MIT1002_03391	0.17	-0.1
3,793,292	+		MIT1002_03391	0.17	+1.8
3,793,292	+		MIT1002_03391	0.17	+0.1
3,793,292	+		MIT1002_03391	0.17	-0.9
3,793,292	+		MIT1002_03391	0.17	-2.7
3,793,292	+		MIT1002_03391	0.17	-1.4
3,793,294	+		MIT1002_03391	0.18	-0.7
3,793,294	+		MIT1002_03391	0.18	-0.5
3,793,300	-		MIT1002_03391	0.18	+1.1
3,793,300	-		MIT1002_03391	0.18	-0.5
3,793,300	-		MIT1002_03391	0.18	+0.2
3,793,300	-		MIT1002_03391	0.18	-0.8
3,793,300	-		MIT1002_03391	0.18	-0.2
3,793,300	-		MIT1002_03391	0.18	+1.3
3,793,302	-		MIT1002_03391	0.18	-1.7