Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03339

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,730,349	-		MIT1002_03338	0.69	+0.3
3,730,388	-		MIT1002_03338	0.70	+0.8
3,730,402	-		MIT1002_03338	0.71	-1.2
3,730,413	-		MIT1002_03338	0.71	+2.1
3,730,418	+		MIT1002_03338	0.71	+0.9
3,730,426	-		MIT1002_03338	0.72	+0.5
3,730,447	+		MIT1002_03338	0.72	+0.7
3,730,455	-		MIT1002_03338	0.73	-1.0
3,730,455	-		MIT1002_03338	0.73	-0.5
3,730,457	+		MIT1002_03338	0.73	-0.7
3,730,457	+		MIT1002_03338	0.73	-0.5
3,730,457	+		MIT1002_03338	0.73	+0.2
3,730,465	-		MIT1002_03338	0.73	-0.5
3,730,517	+		MIT1002_03338	0.75	-0.4
3,730,525	-		MIT1002_03338	0.76	-0.3
3,730,565	-		MIT1002_03338	0.77	-0.8
3,730,618	+		MIT1002_03338	0.79	+0.1
3,730,631	-		MIT1002_03338	0.80	-2.6
3,730,633	+		MIT1002_03338	0.80	+1.0
3,730,648	+		MIT1002_03338	0.80	-0.2
3,730,648	+		MIT1002_03338	0.80	+1.0
3,730,656	-		MIT1002_03338	0.81	+1.7
3,730,656	-		MIT1002_03338	0.81	-0.5
3,730,658	+		MIT1002_03338	0.81	-0.4
3,730,666	-		MIT1002_03338	0.81	+1.5
3,730,749	+		MIT1002_03338	0.84	+0.1
3,730,825	+		MIT1002_03338	0.87	+0.9
3,730,831	+		MIT1002_03338	0.88	+0.1
3,730,831	+		MIT1002_03338	0.88	+1.3
3,730,831	+		MIT1002_03338	0.88	-2.6
3,730,833	-		MIT1002_03338	0.88	+1.1
3,730,833	-		MIT1002_03338	0.88	+0.5
3,730,833	-		MIT1002_03338	0.88	+2.4
3,730,839	-		MIT1002_03338	0.88	+1.2
3,730,862	-		MIT1002_03338	0.89	-0.4
3,730,929	-				+0.9
3,730,929	-				-0.3
3,730,931	-				+3.2
3,730,934	-				-2.8
3,731,068	+				-0.2
3,731,083	+				+1.0
3,731,113	+				-1.3
3,731,118	+				+0.7
3,731,122	-				+0.3
3,731,126	-				+0.3
3,731,128	+				+1.5
3,731,128	+				+0.0
3,731,135	+				+0.0
3,731,136	+				+1.3
3,731,143	-				-1.2
3,731,168	+				-1.2
3,731,168	+				+0.5
3,731,268	+				-2.5
3,731,268	+				-0.2
3,731,413	+		MIT1002_03339	0.10	+0.3
3,731,421	-		MIT1002_03339	0.11	-1.2
3,731,455	-		MIT1002_03339	0.16	-0.5
3,731,483	+		MIT1002_03339	0.21	+0.5
3,731,483	+		MIT1002_03339	0.21	+0.5
3,731,518	-		MIT1002_03339	0.26	-0.2
3,731,576	+		MIT1002_03339	0.35	+0.3
3,731,576	+		MIT1002_03339	0.35	-0.0
3,731,584	-		MIT1002_03339	0.36	-1.1
3,731,584	-		MIT1002_03339	0.36	-0.8
3,731,584	-		MIT1002_03339	0.36	+1.1
3,731,643	-		MIT1002_03339	0.45	-0.2
3,731,684	+		MIT1002_03339	0.51	-0.8
3,731,765	+		MIT1002_03339	0.64	+1.1
3,731,765	+		MIT1002_03339	0.64	-1.6
3,731,765	+		MIT1002_03339	0.64	+0.1
3,731,765	+		MIT1002_03339	0.64	+0.1
3,731,765	+		MIT1002_03339	0.64	-1.0
3,731,765	+		MIT1002_03339	0.64	-0.5
3,731,765	+		MIT1002_03339	0.64	-0.6
3,731,765	+		MIT1002_03339	0.64	+1.8
3,731,765	+		MIT1002_03339	0.64	+1.4
3,731,765	+		MIT1002_03339	0.64	+1.0
3,731,773	-		MIT1002_03339	0.65	+0.3
3,731,773	-		MIT1002_03339	0.65	+0.4
3,731,773	-		MIT1002_03339	0.65	+0.3
3,731,773	-		MIT1002_03339	0.65	+0.8
3,731,773	-		MIT1002_03339	0.65	+0.3
3,731,773	-		MIT1002_03339	0.65	-1.4
3,731,773	-		MIT1002_03339	0.65	-0.0
3,731,773	-		MIT1002_03339	0.65	-2.0
3,731,773	-		MIT1002_03339	0.65	+0.0
3,731,773	-		MIT1002_03339	0.65	-0.2
3,731,773	-		MIT1002_03339	0.65	-0.8
3,731,773	-		MIT1002_03339	0.65	-0.3
3,731,773	-		MIT1002_03339	0.65	-0.9
3,731,773	-		MIT1002_03339	0.65	-0.5
3,731,773	-		MIT1002_03339	0.65	-1.3
3,731,879	+		MIT1002_03339	0.81	-0.1
3,731,925	+		MIT1002_03339	0.88	-0.4
3,731,933	-		MIT1002_03339	0.89	+0.3
3,731,960	+				-0.3
3,731,979	-				-0.7
3,732,045	+				+0.6
3,732,046	+				-1.8
3,732,050	+				+2.5
3,732,058	-				+0.9
3,732,058	-				+1.2
3,732,065	+				-0.2
3,732,065	+				-0.4
3,732,073	-				-0.1
3,732,073	-				+0.5
3,732,073	-				+0.5
3,732,073	-				+0.3
3,732,073	-				-0.1
3,732,073	-				-1.2
3,732,139	-				+1.0
3,732,170	+		MIT1002_03340	0.11	-1.5
3,732,194	-		MIT1002_03340	0.12	-0.0
3,732,245	+		MIT1002_03340	0.15	+0.5
3,732,269	+		MIT1002_03340	0.17	+1.9
3,732,415	+		MIT1002_03340	0.26	-1.0
3,732,423	-		MIT1002_03340	0.27	-1.0
3,732,423	-		MIT1002_03340	0.27	+0.0
3,732,591	+		MIT1002_03340	0.38	-2.6
3,732,599	-		MIT1002_03340	0.38	-0.5
3,732,630	+		MIT1002_03340	0.40	-0.2
3,732,640	+		MIT1002_03340	0.41	-1.0
3,732,640	+		MIT1002_03340	0.41	+1.3
3,732,640	+		MIT1002_03340	0.41	+0.1
3,732,648	-		MIT1002_03340	0.41	+0.1
3,732,648	-		MIT1002_03340	0.41	-0.5
3,732,648	-		MIT1002_03340	0.41	+1.6
3,732,648	-		MIT1002_03340	0.41	-0.9
3,732,648	-		MIT1002_03340	0.41	-0.3
3,732,648	-		MIT1002_03340	0.41	+0.1
3,732,648	-		MIT1002_03340	0.41	+0.3
3,732,707	+		MIT1002_03340	0.45	+0.6
3,732,729	+		MIT1002_03340	0.46	+0.4
3,732,763	+		MIT1002_03340	0.49	+0.2
3,732,763	+		MIT1002_03340	0.49	+0.6
3,732,793	+		MIT1002_03340	0.50	-2.3
3,732,806	-		MIT1002_03340	0.51	-0.1
3,732,865	+		MIT1002_03340	0.55	+0.0
3,732,940	+		MIT1002_03340	0.60	-1.7
3,732,940	+		MIT1002_03340	0.60	-0.2