Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03299

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,678,521	+		MIT1002_03298	0.25	-1.5
3,678,529	-		MIT1002_03298	0.25	+0.1
3,678,531	+		MIT1002_03298	0.26	+0.9
3,678,582	-		MIT1002_03298	0.29	+0.3
3,678,766	+		MIT1002_03298	0.44	+1.0
3,678,940	+		MIT1002_03298	0.57	-0.4
3,678,940	+		MIT1002_03298	0.57	+0.1
3,678,962	-		MIT1002_03298	0.59	-0.8
3,678,993	-		MIT1002_03298	0.61	-1.8
3,678,995	+		MIT1002_03298	0.61	-0.9
3,678,997	+		MIT1002_03298	0.61	+0.4
3,678,997	+		MIT1002_03298	0.61	-2.7
3,678,997	+		MIT1002_03298	0.61	+0.1
3,678,997	+		MIT1002_03298	0.61	+0.1
3,678,997	+		MIT1002_03298	0.61	+0.5
3,678,997	+		MIT1002_03298	0.61	-0.5
3,678,997	+		MIT1002_03298	0.61	+0.1
3,679,005	-		MIT1002_03298	0.62	+1.6
3,679,005	-		MIT1002_03298	0.62	-1.0
3,679,005	-		MIT1002_03298	0.62	+0.9
3,679,063	-		MIT1002_03298	0.67	-0.2
3,679,137	+		MIT1002_03298	0.72	-0.6
3,679,242	+		MIT1002_03298	0.80	-1.1
3,679,268	+		MIT1002_03298	0.82	-0.6
3,679,280	+		MIT1002_03298	0.83	-0.1
3,679,543	-				-1.0
3,679,591	-				+0.3
3,679,752	-		MIT1002_03299	0.11	+1.0
3,679,795	+		MIT1002_03299	0.13	-2.4
3,679,912	+		MIT1002_03299	0.19	-1.0
3,679,920	-		MIT1002_03299	0.19	+1.6
3,679,937	-		MIT1002_03299	0.20	+1.6
3,679,984	+		MIT1002_03299	0.22	-0.3
3,679,984	+		MIT1002_03299	0.22	-0.8
3,679,984	+		MIT1002_03299	0.22	-0.9
3,679,992	-		MIT1002_03299	0.22	-0.3
3,680,009	+		MIT1002_03299	0.23	+2.5
3,680,115	-		MIT1002_03299	0.28	-0.7
3,680,145	+		MIT1002_03299	0.29	-0.6
3,680,155	+		MIT1002_03299	0.30	+0.5
3,680,208	+		MIT1002_03299	0.32	-0.3
3,680,208	+		MIT1002_03299	0.32	+0.1
3,680,246	+		MIT1002_03299	0.34	-0.1
3,680,254	-		MIT1002_03299	0.34	-0.6
3,680,282	+		MIT1002_03299	0.35	-0.4
3,680,396	+		MIT1002_03299	0.41	+0.2
3,680,479	-		MIT1002_03299	0.44	-0.4
3,680,634	+		MIT1002_03299	0.51	-2.3
3,680,642	-		MIT1002_03299	0.52	+2.1
3,680,642	-		MIT1002_03299	0.52	+1.4
3,680,693	+		MIT1002_03299	0.54	+0.2
3,680,737	+		MIT1002_03299	0.56	-2.3
3,680,770	-		MIT1002_03299	0.58	+3.6
3,680,776	+		MIT1002_03299	0.58	+0.3
3,680,801	+		MIT1002_03299	0.59	-0.6
3,680,803	+		MIT1002_03299	0.59	-0.5
3,680,846	-		MIT1002_03299	0.61	+0.6
3,680,893	+		MIT1002_03299	0.63	-1.9
3,680,923	-		MIT1002_03299	0.65	-0.2
3,680,925	+		MIT1002_03299	0.65	-0.6
3,680,984	+		MIT1002_03299	0.67	+0.1
3,680,984	+		MIT1002_03299	0.67	+0.8
3,680,984	+		MIT1002_03299	0.67	-0.8
3,681,109	+		MIT1002_03299	0.73	+0.3
3,681,149	+		MIT1002_03299	0.75	+1.2
3,681,153	+		MIT1002_03299	0.75	+0.4
3,681,161	-		MIT1002_03299	0.75	+0.3
3,681,161	-		MIT1002_03299	0.75	+0.3
3,681,190	+		MIT1002_03299	0.77	+0.1
3,681,246	-		MIT1002_03299	0.79	-1.8
3,681,246	-		MIT1002_03299	0.79	+0.9
3,681,282	+		MIT1002_03299	0.81	-2.3
3,681,290	-		MIT1002_03299	0.81	-0.2
3,681,365	-		MIT1002_03299	0.85	+1.3
3,681,403	-		MIT1002_03299	0.87	+0.2
3,681,411	-		MIT1002_03299	0.87	-1.7
3,681,411	-		MIT1002_03299	0.87	-0.2
3,681,411	-		MIT1002_03299	0.87	-0.3
3,681,465	+		MIT1002_03299	0.89	-0.0
3,681,484	-				-2.1
3,681,493	-				-0.4
3,681,493	-				+0.6
3,681,499	+				-0.1
3,681,499	+				-0.4
3,681,549	+				-1.3
3,681,555	-				-0.5
3,681,582	+				-2.0
3,681,592	+				+0.6
3,681,678	-				-0.2
3,681,693	-				+1.1
3,681,909	+				+0.1
3,681,909	+				+0.8
3,681,909	+				+0.7
3,681,909	+				+0.5
3,681,909	+				-0.1
3,681,917	-				+0.0
3,682,021	+				-3.0
3,682,021	+				-5.0
3,682,214	+		MIT1002_03300	0.26	-3.0
3,682,227	+		MIT1002_03300	0.27	+0.8
3,682,236	+		MIT1002_03300	0.28	-3.2
3,682,236	+		MIT1002_03300	0.28	+0.6
3,682,262	+		MIT1002_03300	0.32	-3.7
3,682,265	-		MIT1002_03300	0.32	-3.3
3,682,275	+		MIT1002_03300	0.33	-3.6
3,682,345	+		MIT1002_03300	0.42	-4.3
3,682,350	+		MIT1002_03300	0.43	-0.8
3,682,355	-		MIT1002_03300	0.44	-3.8
3,682,358	-		MIT1002_03300	0.44	-2.6
3,682,395	+		MIT1002_03300	0.49	-2.5
3,682,404	-		MIT1002_03300	0.50	-2.2
3,682,407	+		MIT1002_03300	0.50	-0.9
3,682,420	+		MIT1002_03300	0.52	+0.1
3,682,445	+		MIT1002_03300	0.55	-3.1
3,682,453	-		MIT1002_03300	0.56	-4.2
3,682,534	-		MIT1002_03300	0.66	-4.2
3,682,616	-		MIT1002_03300	0.77	-2.4
3,682,693	+		MIT1002_03300	0.87	-1.9