Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03279

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,651,842	-				-0.7
3,651,973	-				-0.5
3,652,029	+				+0.1
3,652,048	-				+2.3
3,652,048	-				-0.4
3,652,056	+				-1.2
3,652,064	-				-2.0
3,652,095	+		MIT1002_03278	0.10	-3.6
3,652,100	+		MIT1002_03278	0.11	+0.6
3,652,168	+		MIT1002_03278	0.25	+1.1
3,652,225	+		MIT1002_03278	0.37	+0.8
3,652,255	+		MIT1002_03278	0.43	-2.1
3,652,255	+		MIT1002_03278	0.43	-1.1
3,652,255	+		MIT1002_03278	0.43	+0.1
3,652,263	-		MIT1002_03278	0.44	+0.8
3,652,263	-		MIT1002_03278	0.44	-1.3
3,652,308	-		MIT1002_03278	0.53	-1.1
3,652,440	-		MIT1002_03278	0.80	-1.0
3,652,447	-		MIT1002_03278	0.81	-3.8
3,652,457	-		MIT1002_03278	0.83	-1.1
3,652,566	+				-2.4
3,652,586	+				-2.1
3,652,661	+				-0.6
3,652,734	-				-1.4
3,652,744	-				-0.8
3,652,791	+				+0.6
3,652,791	+				-0.5
3,652,840	-				-2.1
3,652,881	+				-1.9
3,652,886	+				-2.5
3,652,914	-				-0.4
3,652,946	+				-0.2
3,652,954	-				-1.3
3,652,959	-				-2.3
3,652,970	+				+1.3
3,652,978	-				-1.0
3,653,001	+				-1.6
3,653,071	+		MIT1002_03279	0.13	+0.6
3,653,092	-		MIT1002_03279	0.14	-3.5
3,653,099	+		MIT1002_03279	0.15	-2.1
3,653,107	-		MIT1002_03279	0.15	-1.3
3,653,107	-		MIT1002_03279	0.15	-2.3
3,653,180	+		MIT1002_03279	0.19	-4.0
3,653,180	+		MIT1002_03279	0.19	-3.6
3,653,215	-		MIT1002_03279	0.21	-2.3
3,653,264	-		MIT1002_03279	0.24	-2.9
3,653,321	+		MIT1002_03279	0.27	-1.6
3,653,329	-		MIT1002_03279	0.28	-2.2
3,653,331	+		MIT1002_03279	0.28	-1.5
3,653,340	+		MIT1002_03279	0.28	-1.3
3,653,348	-		MIT1002_03279	0.29	-0.3
3,653,348	-		MIT1002_03279	0.29	-1.4
3,653,348	-		MIT1002_03279	0.29	+1.1
3,653,400	+		MIT1002_03279	0.32	+0.1
3,653,400	+		MIT1002_03279	0.32	-1.5
3,653,408	-		MIT1002_03279	0.32	-2.1
3,653,640	+		MIT1002_03279	0.45	-0.6
3,653,656	+		MIT1002_03279	0.46	-1.6
3,653,713	+		MIT1002_03279	0.49	-0.6
3,653,713	-		MIT1002_03279	0.49	-0.8
3,653,775	+		MIT1002_03279	0.53	-4.9
3,653,775	+		MIT1002_03279	0.53	-0.9
3,653,775	+		MIT1002_03279	0.53	-0.6
3,653,775	+		MIT1002_03279	0.53	-2.2
3,653,775	-		MIT1002_03279	0.53	-2.7
3,653,780	+		MIT1002_03279	0.53	-0.9
3,653,783	-		MIT1002_03279	0.53	-1.2
3,653,783	-		MIT1002_03279	0.53	-1.0
3,653,783	-		MIT1002_03279	0.53	-1.7
3,653,783	-		MIT1002_03279	0.53	-1.9
3,653,783	-		MIT1002_03279	0.53	-2.6
3,653,783	-		MIT1002_03279	0.53	-0.5
3,653,788	-		MIT1002_03279	0.53	-1.7
3,653,788	-		MIT1002_03279	0.53	-1.2
3,653,963	+		MIT1002_03279	0.63	-0.2
3,653,963	+		MIT1002_03279	0.63	-2.7
3,653,964	+		MIT1002_03279	0.63	-1.3
3,653,972	-		MIT1002_03279	0.64	-2.8
3,654,001	+		MIT1002_03279	0.65	-3.7
3,654,009	-		MIT1002_03279	0.66	-4.2
3,654,017	-		MIT1002_03279	0.66	-1.7
3,654,151	-		MIT1002_03279	0.74	-0.0
3,654,151	-		MIT1002_03279	0.74	-2.4
3,654,151	-		MIT1002_03279	0.74	-3.2
3,654,163	-		MIT1002_03279	0.74	-0.4
3,654,204	-		MIT1002_03279	0.77	-0.3
3,654,210	+		MIT1002_03279	0.77	+0.7
3,654,237	+		MIT1002_03279	0.78	-1.3
3,654,237	+		MIT1002_03279	0.78	+1.1
3,654,259	-		MIT1002_03279	0.80	-1.8
3,654,282	+		MIT1002_03279	0.81	-1.9
3,654,378	+		MIT1002_03279	0.86	-1.0
3,654,378	+		MIT1002_03279	0.86	-3.2
3,654,408	-		MIT1002_03279	0.88	-1.7
3,654,503	+				-0.2
3,654,503	+				-1.3
3,654,549	+				-2.0
3,654,577	-				-1.0
3,654,579	+				-0.9
3,654,582	-				-3.0
3,654,658	+				-3.0
3,654,658	+				-0.4
3,654,666	-				-1.2
3,654,677	+				+0.6
3,654,685	-				-2.1
3,654,687	+				+0.3
3,654,707	-				-0.9
3,654,744	-				-4.3
3,654,827	+				+0.9
3,654,893	+				+1.1
3,654,896	-				+0.5
3,654,900	+				+0.6
3,654,936	-				+1.0
3,654,998	+				+0.1
3,655,002	+				-2.0
3,655,065	+		MIT1002_03280	0.17	+1.3
3,655,232	+		MIT1002_03280	0.35	+0.7
3,655,301	-		MIT1002_03280	0.43	-2.5
3,655,409	-		MIT1002_03280	0.55	-2.4
3,655,414	+		MIT1002_03280	0.55	-1.1
3,655,414	+		MIT1002_03280	0.55	+0.3
3,655,443	-		MIT1002_03280	0.59	-1.3
3,655,474	+		MIT1002_03280	0.62	+0.6
3,655,484	-		MIT1002_03280	0.63	-3.4
3,655,571	+		MIT1002_03280	0.73	-1.0