Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_03046

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,395,605	+		MIT1002_03044	0.16	-1.4
3,395,605	+		MIT1002_03044	0.16	+0.9
3,395,605	+		MIT1002_03044	0.16	+0.4
3,395,605	+		MIT1002_03044	0.16	+0.8
3,395,633	-		MIT1002_03044	0.20	+1.3
3,395,635	+		MIT1002_03044	0.20	+0.1
3,395,643	-		MIT1002_03044	0.21	+0.6
3,395,645	-		MIT1002_03044	0.21	-2.1
3,395,650	+		MIT1002_03044	0.22	+1.0
3,395,653	-		MIT1002_03044	0.23	-1.0
3,395,672	+		MIT1002_03044	0.25	+0.4
3,395,680	-		MIT1002_03044	0.26	-0.7
3,395,745	+		MIT1002_03044	0.36	+0.3
3,395,750	+		MIT1002_03044	0.36	-0.5
3,395,755	+		MIT1002_03044	0.37	+1.4
3,395,770	+		MIT1002_03044	0.39	-1.8
3,395,785	+		MIT1002_03044	0.42	+0.3
3,395,793	-		MIT1002_03044	0.43	-0.8
3,395,824	+		MIT1002_03044	0.47	-0.7
3,395,934	+		MIT1002_03044	0.63	-0.4
3,395,934	+		MIT1002_03044	0.63	+0.1
3,395,935	-		MIT1002_03044	0.63	-0.2
3,395,942	-		MIT1002_03044	0.64	+1.5
3,395,956	+		MIT1002_03044	0.66	-0.7
3,395,964	-		MIT1002_03044	0.67	+0.0
3,395,994	-		MIT1002_03044	0.72	-1.3
3,396,037	-		MIT1002_03044	0.78	-0.3
3,396,048	-		MIT1002_03044	0.79	+0.1
3,396,049	+		MIT1002_03044	0.79	+0.7
3,396,049	+		MIT1002_03044	0.79	-0.7
3,396,049	+		MIT1002_03044	0.79	+1.1
3,396,049	+		MIT1002_03044	0.79	-0.2
3,396,057	-		MIT1002_03044	0.81	-0.8
3,396,138	+				-0.6
3,396,162	-				-1.5
3,396,206	+		MIT1002_03045	0.17	-2.8
3,396,214	-		MIT1002_03045	0.19	-0.4
3,396,234	+		MIT1002_03045	0.26	-0.0
3,396,242	-		MIT1002_03045	0.28	+0.6
3,396,254	-		MIT1002_03045	0.32	+1.0
3,396,261	+		MIT1002_03045	0.34	+0.8
3,396,369	-		MIT1002_03045	0.67	+0.8
3,396,436	-		MIT1002_03045	0.88	-0.2
3,396,508	+				-1.0
3,396,523	+				-1.5
3,396,540	+				-0.6
3,396,548	-				+0.9
3,396,559	-				-0.3
3,396,590	-				+1.0
3,396,617	+				+0.3
3,396,617	+				-0.7
3,396,625	-				-0.3
3,396,625	-				+0.0
3,396,682	-				+0.8
3,396,682	-				-0.3
3,396,682	-				+2.0
3,396,682	-				-0.5
3,396,682	-				+0.9
3,396,690	-				+0.8
3,396,692	+				-0.1
3,396,746	+				-1.6
3,396,754	-				+1.6
3,396,902	-		MIT1002_03046	0.14	-1.1
3,396,910	-		MIT1002_03046	0.14	-0.8
3,396,993	+		MIT1002_03046	0.18	-0.9
3,397,012	+		MIT1002_03046	0.19	+1.2
3,397,049	+		MIT1002_03046	0.21	+2.2
3,397,071	+		MIT1002_03046	0.22	+0.0
3,397,185	-		MIT1002_03046	0.27	+0.5
3,397,202	+		MIT1002_03046	0.28	-1.8
3,397,210	-		MIT1002_03046	0.28	+0.1
3,397,210	-		MIT1002_03046	0.28	+0.3
3,397,232	+		MIT1002_03046	0.29	-0.0
3,397,240	-		MIT1002_03046	0.30	+0.6
3,397,241	-		MIT1002_03046	0.30	-0.9
3,397,254	+		MIT1002_03046	0.31	+0.6
3,397,275	+		MIT1002_03046	0.32	+0.2
3,397,283	-		MIT1002_03046	0.32	+0.6
3,397,350	-		MIT1002_03046	0.35	-0.4
3,397,350	-		MIT1002_03046	0.35	+0.1
3,397,350	-		MIT1002_03046	0.35	+0.4
3,397,396	+		MIT1002_03046	0.37	+0.5
3,397,404	-		MIT1002_03046	0.38	+0.7
3,397,441	-		MIT1002_03046	0.39	-0.3
3,397,473	+		MIT1002_03046	0.41	+1.0
3,397,473	-		MIT1002_03046	0.41	-0.5
3,397,557	+		MIT1002_03046	0.45	-1.6
3,397,565	-		MIT1002_03046	0.45	+0.3
3,397,575	+		MIT1002_03046	0.46	-0.1
3,397,594	+		MIT1002_03046	0.46	-0.6
3,397,594	+		MIT1002_03046	0.46	+0.1
3,397,594	+		MIT1002_03046	0.46	-0.7
3,397,602	-		MIT1002_03046	0.47	-1.1
3,397,618	+		MIT1002_03046	0.48	-2.0
3,397,643	+		MIT1002_03046	0.49	-0.7
3,397,651	-		MIT1002_03046	0.49	-0.6
3,397,663	-		MIT1002_03046	0.50	+1.2
3,397,752	+		MIT1002_03046	0.54	+0.6
3,397,760	-		MIT1002_03046	0.54	-0.1
3,397,828	-		MIT1002_03046	0.57	-1.6
3,397,828	-		MIT1002_03046	0.57	-0.1
3,397,923	+		MIT1002_03046	0.62	-1.3
3,398,064	-		MIT1002_03046	0.68	+1.4
3,398,064	-		MIT1002_03046	0.68	-1.4
3,398,065	+		MIT1002_03046	0.69	+0.9
3,398,065	+		MIT1002_03046	0.69	+0.0
3,398,073	-		MIT1002_03046	0.69	+2.2
3,398,073	-		MIT1002_03046	0.69	-1.4
3,398,073	-		MIT1002_03046	0.69	-2.5
3,398,073	-		MIT1002_03046	0.69	+0.6
3,398,091	+		MIT1002_03046	0.70	-0.8
3,398,091	+		MIT1002_03046	0.70	-1.1
3,398,091	+		MIT1002_03046	0.70	+1.9
3,398,099	-		MIT1002_03046	0.70	+0.4
3,398,174	-		MIT1002_03046	0.74	-1.6
3,398,225	+		MIT1002_03046	0.76	-1.1
3,398,233	-		MIT1002_03046	0.76	+0.5
3,398,302	-		MIT1002_03046	0.80	-0.6
3,398,387	+		MIT1002_03046	0.84	-1.9
3,398,387	+		MIT1002_03046	0.84	+0.2
3,398,394	-		MIT1002_03046	0.84	+0.2
3,398,405	-		MIT1002_03046	0.84	-1.5
3,398,422	+		MIT1002_03046	0.85	+0.5
3,398,511	-		MIT1002_03046	0.89	+0.1
3,398,513	+		MIT1002_03046	0.90	-1.0
3,398,521	-		MIT1002_03046	0.90	+0.4
3,398,549	+				+0.4
3,398,559	+				-1.3
3,398,612	+				-0.3
3,398,722	-				-0.6
3,398,744	-				-1.6
3,398,751	-				+0.2
3,398,759	-				+1.0
3,398,759	-				-0.8
3,398,774	-				+1.0
3,398,782	-				+1.0
3,398,813	+		MIT1002_03047	0.19	+0.4
3,398,832	+		MIT1002_03047	0.25	-1.1
3,398,851	+		MIT1002_03047	0.31	+1.2
3,398,851	+		MIT1002_03047	0.31	+0.1
3,398,851	+		MIT1002_03047	0.31	-0.4
3,398,859	-		MIT1002_03047	0.33	+0.5
3,398,859	-		MIT1002_03047	0.33	+1.3
3,398,897	-		MIT1002_03047	0.45	-0.2
3,398,897	-		MIT1002_03047	0.45	-1.1
3,398,979	-		MIT1002_03047	0.71	+0.2
3,399,000	-		MIT1002_03047	0.77	-1.6
3,399,000	-		MIT1002_03047	0.77	+0.1
3,399,028	+		MIT1002_03047	0.86	-2.5
3,399,081	+				-0.5
3,399,084	+				-1.1
3,399,112	+				+2.0
3,399,122	+				+0.9
3,399,170	-				+0.6
3,399,208	+				+0.4
3,399,329	+		MIT1002_03048	0.12	+0.4
3,399,347	+		MIT1002_03048	0.13	+2.0
3,399,355	-		MIT1002_03048	0.14	-0.7
3,399,371	+		MIT1002_03048	0.15	+2.3
3,399,372	+		MIT1002_03048	0.15	+1.2
3,399,468	+		MIT1002_03048	0.22	+0.6