Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02752

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
3,053,985	+				-2.5
3,054,029	+				-2.1
3,054,043	-				-1.2
3,054,072	+				-0.5
3,054,087	-				+0.5
3,054,112	+		MIT1002_02751	0.12	-1.0
3,054,120	-		MIT1002_02751	0.13	-1.3
3,054,179	+		MIT1002_02751	0.21	+0.6
3,054,187	-		MIT1002_02751	0.22	-0.0
3,054,200	-		MIT1002_02751	0.23	-0.8
3,054,246	+		MIT1002_02751	0.29	-0.6
3,054,246	-		MIT1002_02751	0.29	-2.3
3,054,303	-		MIT1002_02751	0.36	-0.8
3,054,303	-		MIT1002_02751	0.36	+0.8
3,054,328	+		MIT1002_02751	0.39	+0.8
3,054,343	-		MIT1002_02751	0.41	+0.6
3,054,378	+		MIT1002_02751	0.46	+0.7
3,054,408	-		MIT1002_02751	0.49	-0.7
3,054,438	-		MIT1002_02751	0.53	+0.6
3,054,505	+		MIT1002_02751	0.62	-0.0
3,054,508	-		MIT1002_02751	0.62	+0.8
3,054,528	+		MIT1002_02751	0.65	+0.3
3,054,560	+		MIT1002_02751	0.69	+2.1
3,054,594	-		MIT1002_02751	0.73	+1.6
3,054,615	-		MIT1002_02751	0.75	+0.2
3,054,615	-		MIT1002_02751	0.75	+0.4
3,054,675	+		MIT1002_02751	0.83	+0.2
3,054,690	+		MIT1002_02751	0.85	+1.1
3,054,735	+				-0.9
3,054,764	+				-0.9
3,054,781	+				+1.7
3,054,783	-				+0.8
3,054,795	+				+1.2
3,054,847	-				-1.5
3,054,884	-				-0.2
3,054,895	+				-0.8
3,054,895	+				+0.4
3,054,895	+				+0.9
3,054,895	+				-0.3
3,054,903	-				-2.3
3,054,903	-				+0.2
3,054,903	-				+1.4
3,054,904	+				-0.4
3,054,937	-				-2.5
3,055,083	-				+0.2
3,055,083	-				+1.0
3,055,128	+				+1.1
3,055,279	+		MIT1002_02752	0.17	+0.8
3,055,340	+		MIT1002_02752	0.20	+0.3
3,055,365	+		MIT1002_02752	0.22	+1.9
3,055,406	-		MIT1002_02752	0.24	+1.3
3,055,417	-		MIT1002_02752	0.25	+0.3
3,055,427	+		MIT1002_02752	0.25	-0.6
3,055,427	+		MIT1002_02752	0.25	-1.2
3,055,428	-		MIT1002_02752	0.25	-0.2
3,055,460	-		MIT1002_02752	0.27	-0.4
3,055,671	-		MIT1002_02752	0.39	+0.3
3,055,672	+		MIT1002_02752	0.39	-0.1
3,055,679	+		MIT1002_02752	0.39	-1.0
3,055,680	-		MIT1002_02752	0.39	-0.1
3,055,680	-		MIT1002_02752	0.39	+0.6
3,055,687	-		MIT1002_02752	0.40	+0.0
3,055,791	+		MIT1002_02752	0.46	+0.3
3,055,842	-		MIT1002_02752	0.48	-2.0
3,055,896	+		MIT1002_02752	0.51	-0.4
3,055,904	-		MIT1002_02752	0.52	-0.8
3,055,909	-		MIT1002_02752	0.52	+4.1
3,055,916	+		MIT1002_02752	0.53	-1.4
3,055,916	+		MIT1002_02752	0.53	-0.1
3,055,924	-		MIT1002_02752	0.53	-1.1
3,055,924	-		MIT1002_02752	0.53	-0.1
3,056,056	-		MIT1002_02752	0.60	-0.7
3,056,057	-		MIT1002_02752	0.60	-1.0
3,056,085	-		MIT1002_02752	0.62	+0.7
3,056,091	+		MIT1002_02752	0.62	+1.4
3,056,097	+		MIT1002_02752	0.63	+0.9
3,056,169	-		MIT1002_02752	0.67	-1.0
3,056,169	-		MIT1002_02752	0.67	+2.1
3,056,191	+		MIT1002_02752	0.68	-0.2
3,056,238	-		MIT1002_02752	0.71	+0.5
3,056,250	+		MIT1002_02752	0.71	+0.5
3,056,286	+		MIT1002_02752	0.73	-0.6
3,056,383	+		MIT1002_02752	0.79	+2.5
3,056,389	+		MIT1002_02752	0.79	+1.7
3,056,389	+		MIT1002_02752	0.79	-1.4
3,056,543	-		MIT1002_02752	0.88	+0.9
3,056,545	+		MIT1002_02752	0.88	-0.2
3,056,560	+		MIT1002_02752	0.89	-0.8
3,056,570	+		MIT1002_02752	0.89	+1.7
3,056,588	-				+0.9
3,056,590	+				+0.3
3,056,598	-				-1.6
3,056,601	+				+1.1
3,056,609	-				-0.4
3,056,679	+				+1.1
3,056,736	-				+0.8
3,056,914	-				-2.2
3,056,952	+				+0.2
3,056,973	-		MIT1002_02753	0.11	+0.8
3,057,023	-		MIT1002_02753	0.15	+0.6
3,057,033	-		MIT1002_02753	0.16	+0.2
3,057,035	+		MIT1002_02753	0.16	-0.0
3,057,037	+		MIT1002_02753	0.17	+0.5
3,057,091	+		MIT1002_02753	0.21	-0.4
3,057,093	-		MIT1002_02753	0.21	-0.1
3,057,110	-		MIT1002_02753	0.23	+2.2
3,057,161	+		MIT1002_02753	0.27	-0.8
3,057,161	+		MIT1002_02753	0.27	-0.5
3,057,190	-		MIT1002_02753	0.30	-1.1
3,057,249	-		MIT1002_02753	0.35	-1.7
3,057,249	-		MIT1002_02753	0.35	-1.2
3,057,249	-		MIT1002_02753	0.35	+1.1
3,057,249	-		MIT1002_02753	0.35	-1.0
3,057,406	+		MIT1002_02753	0.48	+0.8
3,057,444	-		MIT1002_02753	0.51	+0.3
3,057,471	-		MIT1002_02753	0.54	+0.9
3,057,546	+		MIT1002_02753	0.60	+0.9
3,057,546	+		MIT1002_02753	0.60	-0.8
3,057,567	+		MIT1002_02753	0.62	-1.2
3,057,653	-		MIT1002_02753	0.69	-0.5
3,057,698	+		MIT1002_02753	0.73	+0.2