Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02623

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
2,919,051	+		MIT1002_02621	0.53	-0.4
2,919,051	+		MIT1002_02621	0.53	-0.3
2,919,059	-		MIT1002_02621	0.54	-1.1
2,919,106	-		MIT1002_02621	0.59	+0.6
2,919,115	-		MIT1002_02621	0.60	-0.1
2,919,137	-		MIT1002_02621	0.63	+0.5
2,919,161	-		MIT1002_02621	0.66	-1.0
2,919,189	-		MIT1002_02621	0.69	+0.3
2,919,314	+		MIT1002_02621	0.83	-0.4
2,919,417	+				+1.0
2,919,425	-				+1.3
2,919,427	+				+0.8
2,919,512	+				+0.8
2,919,512	+				-1.5
2,919,541	+				+1.1
2,919,541	+				-2.2
2,919,787	-		MIT1002_02622	0.29	-2.2
2,919,821	-		MIT1002_02622	0.45	+0.6
2,919,848	+		MIT1002_02622	0.57	-2.0
2,919,856	-		MIT1002_02622	0.61	+1.4
2,919,949	+				+1.2
2,919,963	-				-1.1
2,920,063	-				-0.8
2,920,073	+				-0.8
2,920,140	+				-1.7
2,920,152	+				+0.1
2,920,160	-		MIT1002_02623	0.10	+0.1
2,920,219	+		MIT1002_02623	0.15	+0.7
2,920,265	+		MIT1002_02623	0.18	+3.0
2,920,283	-		MIT1002_02623	0.20	+0.6
2,920,290	-		MIT1002_02623	0.20	-1.6
2,920,292	+		MIT1002_02623	0.20	-0.5
2,920,292	+		MIT1002_02623	0.20	-1.1
2,920,300	-		MIT1002_02623	0.21	+0.2
2,920,300	-		MIT1002_02623	0.21	+0.2
2,920,362	-		MIT1002_02623	0.26	-0.6
2,920,362	-		MIT1002_02623	0.26	-0.2
2,920,362	-		MIT1002_02623	0.26	+1.0
2,920,362	-		MIT1002_02623	0.26	+0.2
2,920,364	-		MIT1002_02623	0.26	+0.1
2,920,364	-		MIT1002_02623	0.26	+0.1
2,920,364	-		MIT1002_02623	0.26	+1.1
2,920,364	-		MIT1002_02623	0.26	+1.8
2,920,364	-		MIT1002_02623	0.26	-0.5
2,920,364	-		MIT1002_02623	0.26	-0.2
2,920,419	-		MIT1002_02623	0.30	+0.3
2,920,447	-		MIT1002_02623	0.32	-0.9
2,920,449	+		MIT1002_02623	0.32	+2.1
2,920,501	-		MIT1002_02623	0.36	+1.1
2,920,501	-		MIT1002_02623	0.36	+1.3
2,920,555	-		MIT1002_02623	0.40	+2.1
2,920,619	+		MIT1002_02623	0.45	-1.2
2,920,621	+		MIT1002_02623	0.46	-0.5
2,920,635	+		MIT1002_02623	0.47	-0.1
2,920,694	+		MIT1002_02623	0.51	-0.5
2,920,705	+		MIT1002_02623	0.52	+1.3
2,920,705	+		MIT1002_02623	0.52	-0.5
2,920,705	+		MIT1002_02623	0.52	+1.1
2,920,713	-		MIT1002_02623	0.53	+0.8
2,920,713	-		MIT1002_02623	0.53	+1.1
2,920,713	-		MIT1002_02623	0.53	+2.7
2,920,883	-		MIT1002_02623	0.66	-0.5
2,920,885	+		MIT1002_02623	0.66	+0.8
2,920,953	+		MIT1002_02623	0.71	+0.1
2,920,972	-		MIT1002_02623	0.72	+0.3
2,921,052	+		MIT1002_02623	0.79	-1.1
2,921,108	+		MIT1002_02623	0.83	-0.8
2,921,108	-		MIT1002_02623	0.83	+0.4
2,921,139	-		MIT1002_02623	0.85	+0.6
2,921,153	+		MIT1002_02623	0.86	-1.2
2,921,161	-		MIT1002_02623	0.87	-0.1
2,921,161	-		MIT1002_02623	0.87	-0.4
2,921,194	+		MIT1002_02623	0.89	+0.7
2,921,234	+				-0.4
2,921,246	+				+0.8
2,921,246	+				+2.3
2,921,318	+				+1.3
2,921,385	+				+2.9
2,921,420	-				-0.8
2,921,597	+		MIT1002_02624	0.17	-1.5
2,921,702	-		MIT1002_02624	0.28	+0.3
2,921,726	+		MIT1002_02624	0.31	+1.3
2,921,734	-		MIT1002_02624	0.32	-0.0
2,921,936	+		MIT1002_02624	0.54	-0.1
2,921,937	-		MIT1002_02624	0.54	-0.5
2,922,000	+		MIT1002_02624	0.61	+0.1
2,922,000	+		MIT1002_02624	0.61	-0.5
2,922,008	-		MIT1002_02624	0.62	+0.9
2,922,012	+		MIT1002_02624	0.62	+0.8
2,922,012	+		MIT1002_02624	0.62	+0.3
2,922,012	+		MIT1002_02624	0.62	+1.8
2,922,012	+		MIT1002_02624	0.62	+0.1
2,922,020	-		MIT1002_02624	0.63	-1.3
2,922,020	-		MIT1002_02624	0.63	-1.1
2,922,020	-		MIT1002_02624	0.63	-0.8
2,922,020	-		MIT1002_02624	0.63	-0.5
2,922,020	-		MIT1002_02624	0.63	-1.0
2,922,020	-		MIT1002_02624	0.63	+2.2
2,922,072	-		MIT1002_02624	0.69	+0.6
2,922,119	+		MIT1002_02624	0.74	-0.2
2,922,262	-		MIT1002_02624	0.90	-0.7
2,922,262	-		MIT1002_02624	0.90	-1.2
2,922,309	+				+1.8