Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02569

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
2,866,212	+		MIT1002_02567	0.78	+0.2
2,866,225	-		MIT1002_02567	0.80	+0.6
2,866,317	-				+0.3
2,866,322	-				-0.5
2,866,345	-				+0.5
2,866,345	-				+0.5
2,866,345	-				+0.1
2,866,345	-				+1.1
2,866,361	+				-0.9
2,866,391	-				+0.7
2,866,415	-				+0.9
2,866,554	-				+0.5
2,866,554	-				-0.2
2,866,554	-				-1.4
2,866,575	-				-1.0
2,866,578	+				-2.2
2,866,620	-		MIT1002_02568	0.14	-1.3
2,866,844	+		MIT1002_02568	0.50	-0.3
2,867,006	+		MIT1002_02568	0.76	-3.0
2,867,024	+		MIT1002_02568	0.79	-0.6
2,867,039	+		MIT1002_02568	0.81	-2.0
2,867,039	+		MIT1002_02568	0.81	-0.8
2,867,288	+				+0.7
2,867,308	+				+1.2
2,867,358	+				+1.2
2,867,491	+		MIT1002_02569	0.18	+0.3
2,867,502	+		MIT1002_02569	0.18	+1.5
2,867,505	-		MIT1002_02569	0.19	+1.4
2,867,517	+		MIT1002_02569	0.19	+1.5
2,867,546	+		MIT1002_02569	0.21	+2.3
2,867,627	+		MIT1002_02569	0.26	-0.3
2,867,635	-		MIT1002_02569	0.26	-0.2
2,867,680	+		MIT1002_02569	0.29	-1.7
2,867,701	+		MIT1002_02569	0.30	+1.4
2,867,709	-		MIT1002_02569	0.31	+0.3
2,867,856	+		MIT1002_02569	0.40	+0.5
2,867,910	+		MIT1002_02569	0.43	+1.1
2,867,910	+		MIT1002_02569	0.43	+1.8
2,867,910	+		MIT1002_02569	0.43	+1.9
2,867,918	-		MIT1002_02569	0.44	+1.7
2,867,918	-		MIT1002_02569	0.44	+3.1
2,867,950	+		MIT1002_02569	0.45	+0.2
2,868,022	+		MIT1002_02569	0.50	+0.5
2,868,035	-		MIT1002_02569	0.51	+1.6
2,868,036	+		MIT1002_02569	0.51	+1.5
2,868,050	+		MIT1002_02569	0.52	+2.2
2,868,096	-		MIT1002_02569	0.54	+1.5
2,868,139	+		MIT1002_02569	0.57	+1.3
2,868,210	-		MIT1002_02569	0.61	+2.2
2,868,242	-		MIT1002_02569	0.63	+1.8
2,868,264	+		MIT1002_02569	0.64	+1.8
2,868,272	-		MIT1002_02569	0.65	+2.7
2,868,272	-		MIT1002_02569	0.65	+0.8
2,868,274	+		MIT1002_02569	0.65	+0.1
2,868,277	-		MIT1002_02569	0.65	+1.6
2,868,282	-		MIT1002_02569	0.66	-1.7
2,868,284	+		MIT1002_02569	0.66	+2.3
2,868,290	+		MIT1002_02569	0.66	+1.8
2,868,290	+		MIT1002_02569	0.66	+1.3
2,868,290	+		MIT1002_02569	0.66	+2.0
2,868,298	-		MIT1002_02569	0.67	+0.4
2,868,298	-		MIT1002_02569	0.67	+1.2
2,868,298	-		MIT1002_02569	0.67	+1.0
2,868,298	-		MIT1002_02569	0.67	+0.5
2,868,298	-		MIT1002_02569	0.67	+1.5
2,868,328	+		MIT1002_02569	0.68	+1.5
2,868,428	+		MIT1002_02569	0.74	+1.3
2,868,468	+		MIT1002_02569	0.77	+1.0
2,868,476	-		MIT1002_02569	0.77	+0.4
2,868,498	+		MIT1002_02569	0.79	+0.3
2,868,506	-		MIT1002_02569	0.79	+1.4
2,868,507	-		MIT1002_02569	0.79	+1.4
2,868,570	+		MIT1002_02569	0.83	+1.4
2,868,583	+		MIT1002_02569	0.84	+1.2
2,868,591	-		MIT1002_02569	0.84	+1.6
2,868,591	-		MIT1002_02569	0.84	+1.0
2,868,603	+		MIT1002_02569	0.85	+1.4
2,868,603	+		MIT1002_02569	0.85	+1.2
2,868,603	+		MIT1002_02569	0.85	+3.1
2,868,611	-		MIT1002_02569	0.85	+0.9
2,868,642	+		MIT1002_02569	0.87	+1.5
2,868,647	+		MIT1002_02569	0.88	+1.1
2,868,658	+		MIT1002_02569	0.88	+1.8
2,868,666	-		MIT1002_02569	0.89	+1.0
2,868,675	-		MIT1002_02569	0.89	+1.8
2,868,833	+				+1.5
2,868,838	+				+0.9
2,869,000	+				+0.8
2,869,010	-				+1.7
2,869,117	-				-4.4
2,869,174	-		MIT1002_02570	0.15	-2.5
2,869,222	-		MIT1002_02570	0.22	-2.5
2,869,233	+		MIT1002_02570	0.23	-1.2
2,869,279	+		MIT1002_02570	0.30	-0.4
2,869,286	+		MIT1002_02570	0.31	-2.3
2,869,299	-		MIT1002_02570	0.32	-3.1
2,869,459	+		MIT1002_02570	0.54	-2.3
2,869,557	-		MIT1002_02570	0.68	-1.7
2,869,574	+		MIT1002_02570	0.70	-1.5
2,869,584	+		MIT1002_02570	0.72	-1.5
2,869,584	+		MIT1002_02570	0.72	-2.6
2,869,584	+		MIT1002_02570	0.72	-1.8
2,869,584	+		MIT1002_02570	0.72	+1.1
2,869,584	+		MIT1002_02570	0.72	-3.7
2,869,592	-		MIT1002_02570	0.73	-1.7
2,869,592	-		MIT1002_02570	0.73	-0.1
2,869,592	-		MIT1002_02570	0.73	-2.8
2,869,619	+		MIT1002_02570	0.76	-1.5
2,869,619	+		MIT1002_02570	0.76	-2.8
2,869,619	+		MIT1002_02570	0.76	-1.5
2,869,627	-		MIT1002_02570	0.78	-1.5
2,869,627	-		MIT1002_02570	0.78	+0.5
2,869,627	-		MIT1002_02570	0.78	-2.8
2,869,627	-		MIT1002_02570	0.78	-2.1
2,869,679	+		MIT1002_02570	0.85	+0.7
2,869,679	+		MIT1002_02570	0.85	-2.7
2,869,679	+		MIT1002_02570	0.85	-3.0
2,869,679	+		MIT1002_02570	0.85	+0.7
2,869,685	+		MIT1002_02570	0.86	-1.0
2,869,801	+				+0.3
2,869,809	-				-0.4
2,869,809	-				+2.4
2,869,841	+				+0.5
2,869,849	+				+2.0
2,869,849	+				-0.3