Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02475

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
2,764,428	+				-1.4
2,764,500	-		MIT1002_02474	0.11	+0.6
2,764,502	-		MIT1002_02474	0.11	-0.4
2,764,529	-		MIT1002_02474	0.15	-0.9
2,764,542	+		MIT1002_02474	0.16	+1.8
2,764,542	+		MIT1002_02474	0.16	+1.1
2,764,550	-		MIT1002_02474	0.17	-0.1
2,764,554	+		MIT1002_02474	0.18	+0.9
2,764,562	+		MIT1002_02474	0.19	-0.2
2,764,593	-		MIT1002_02474	0.23	+0.6
2,764,682	-		MIT1002_02474	0.35	-0.8
2,764,729	+		MIT1002_02474	0.41	+1.1
2,764,737	-		MIT1002_02474	0.42	-2.0
2,764,737	-		MIT1002_02474	0.42	+0.2
2,764,751	+		MIT1002_02474	0.44	-0.6
2,764,764	+		MIT1002_02474	0.46	-1.0
2,764,783	+		MIT1002_02474	0.48	+0.4
2,764,783	+		MIT1002_02474	0.48	+1.1
2,764,791	+		MIT1002_02474	0.49	-0.4
2,764,791	-		MIT1002_02474	0.49	+2.0
2,764,791	-		MIT1002_02474	0.49	-0.4
2,764,801	-		MIT1002_02474	0.50	+0.7
2,764,863	-		MIT1002_02474	0.59	+0.5
2,764,863	-		MIT1002_02474	0.59	-0.1
2,764,876	+		MIT1002_02474	0.60	+1.7
2,764,884	-		MIT1002_02474	0.61	-0.6
2,765,010	+		MIT1002_02474	0.78	-0.3
2,765,015	+		MIT1002_02474	0.79	-0.3
2,765,015	+		MIT1002_02474	0.79	+1.4
2,765,015	+		MIT1002_02474	0.79	+0.2
2,765,015	+		MIT1002_02474	0.79	-0.9
2,765,015	+		MIT1002_02474	0.79	-0.1
2,765,015	+		MIT1002_02474	0.79	+0.0
2,765,015	+		MIT1002_02474	0.79	+0.1
2,765,023	-		MIT1002_02474	0.80	-0.7
2,765,023	-		MIT1002_02474	0.80	-4.8
2,765,023	-		MIT1002_02474	0.80	-1.1
2,765,023	-		MIT1002_02474	0.80	+1.0
2,765,023	-		MIT1002_02474	0.80	+0.2
2,765,023	-		MIT1002_02474	0.80	-0.3
2,765,023	-		MIT1002_02474	0.80	-0.6
2,765,023	-		MIT1002_02474	0.80	-3.2
2,765,023	-		MIT1002_02474	0.80	+0.5
2,765,023	-		MIT1002_02474	0.80	+0.3
2,765,025	+		MIT1002_02474	0.80	-1.0
2,765,025	+		MIT1002_02474	0.80	-1.2
2,765,025	+		MIT1002_02474	0.80	-0.7
2,765,025	+		MIT1002_02474	0.80	+1.0
2,765,033	-		MIT1002_02474	0.81	+0.2
2,765,033	-		MIT1002_02474	0.81	-1.0
2,765,033	-		MIT1002_02474	0.81	+1.9
2,765,130	+				+0.4
2,765,232	-				+0.9
2,765,246	+				+0.3
2,765,246	+				-0.2
2,765,246	+				-1.6
2,765,274	+				-0.5
2,765,277	-				-1.3
2,765,288	-				+0.8
2,765,290	+				-0.8
2,765,314	+				+0.6
2,765,314	+				-0.5
2,765,314	+				+0.3
2,765,314	+				-1.4
2,765,314	+				-0.7
2,765,314	+				+0.2
2,765,314	+				+0.2
2,765,314	+				-1.0
2,765,322	-				-0.1
2,765,322	-				-0.3
2,765,322	-				-2.1
2,765,322	-				+1.0
2,765,322	-				-1.4
2,765,322	-				+0.5
2,765,322	-				+1.0
2,765,322	-				-0.2
2,765,322	-				+0.7
2,765,322	-				+2.2
2,765,322	-				-0.7
2,765,322	-				+3.8
2,765,329	-				-1.7
2,765,346	-				-1.1
2,765,365	-				-0.3
2,765,413	+		MIT1002_02475	0.10	-0.4
2,765,431	-		MIT1002_02475	0.13	-1.1
2,765,444	-		MIT1002_02475	0.15	-0.1
2,765,465	+		MIT1002_02475	0.18	+1.4
2,765,465	+		MIT1002_02475	0.18	-0.3
2,765,470	+		MIT1002_02475	0.19	-1.6
2,765,472	+		MIT1002_02475	0.19	+1.6
2,765,480	-		MIT1002_02475	0.21	-0.5
2,765,480	-		MIT1002_02475	0.21	-2.1
2,765,482	+		MIT1002_02475	0.21	-0.2
2,765,583	-		MIT1002_02475	0.37	-0.5
2,765,600	+		MIT1002_02475	0.40	-0.0
2,765,600	+		MIT1002_02475	0.40	-0.8
2,765,644	+		MIT1002_02475	0.47	-0.7
2,765,644	+		MIT1002_02475	0.47	-0.5
2,765,652	-		MIT1002_02475	0.48	+1.2
2,765,652	-		MIT1002_02475	0.48	-0.1
2,765,656	+		MIT1002_02475	0.48	-0.1
2,765,664	-		MIT1002_02475	0.50	-0.1
2,765,664	-		MIT1002_02475	0.50	-2.6
2,765,666	+		MIT1002_02475	0.50	-0.5
2,765,694	-		MIT1002_02475	0.55	+0.6
2,765,716	+		MIT1002_02475	0.58	-0.0
2,765,716	+		MIT1002_02475	0.58	-0.8
2,765,724	-		MIT1002_02475	0.59	+0.1
2,765,742	+		MIT1002_02475	0.62	+1.8
2,765,742	+		MIT1002_02475	0.62	-0.4
2,765,838	-		MIT1002_02475	0.77	-1.5
2,765,861	+		MIT1002_02475	0.81	-1.2
2,765,900	-		MIT1002_02475	0.87	+2.3
2,765,924	-				-1.1
2,765,926	+				-0.9
2,765,934	-				-0.4
2,765,934	-				-2.0
2,765,936	+				-0.6
2,765,957	+				-1.6
2,766,001	+				-1.0
2,766,001	+				-0.7
2,766,009	-				+1.1
2,766,009	-				-0.7
2,766,015	+				-0.1
2,766,023	-				-2.0
2,766,036	+				-1.0
2,766,036	+				-0.0
2,766,036	+				-1.5
2,766,036	+				+0.4
2,766,036	+				-1.7
2,766,044	-				+0.3
2,766,049	+				-0.7
2,766,071	-				-0.5
2,766,081	+				-0.4
2,766,135	-		MIT1002_02476	0.21	-0.3
2,766,164	+		MIT1002_02476	0.27	+0.3
2,766,172	-		MIT1002_02476	0.29	+1.6
2,766,198	+		MIT1002_02476	0.34	+0.2
2,766,212	+		MIT1002_02476	0.37	+0.8
2,766,220	+		MIT1002_02476	0.39	-0.5
2,766,220	-		MIT1002_02476	0.39	+1.5
2,766,228	-		MIT1002_02476	0.41	-0.5
2,766,234	+		MIT1002_02476	0.42	-0.4
2,766,240	+		MIT1002_02476	0.43	+1.0
2,766,243	-		MIT1002_02476	0.44	-0.6
2,766,286	-		MIT1002_02476	0.53	-0.7
2,766,301	+		MIT1002_02476	0.56	+0.2
2,766,301	+		MIT1002_02476	0.56	-1.1
2,766,301	+		MIT1002_02476	0.56	+0.2
2,766,345	+		MIT1002_02476	0.66	+1.0
2,766,355	+		MIT1002_02476	0.68	+2.1
2,766,414	-		MIT1002_02476	0.81	-0.3
2,766,419	+		MIT1002_02476	0.82	+1.0
2,766,428	-		MIT1002_02476	0.84	-1.8
2,766,434	+		MIT1002_02476	0.85	-0.3
2,766,439	+		MIT1002_02476	0.86	+0.6
2,766,453	+		MIT1002_02476	0.89	-0.7
2,766,458	+				+0.5
2,766,458	-				-0.8
2,766,462	+				-0.8
2,766,488	+				-0.7
2,766,488	+				-2.2
2,766,549	+				+0.0
2,766,554	+				-0.1
2,766,577	-				-0.1
2,766,598	+		MIT1002_02477	0.11	+0.0
2,766,600	+		MIT1002_02477	0.11	+3.0
2,766,608	+		MIT1002_02477	0.12	-0.4
2,766,616	-		MIT1002_02477	0.13	-0.8
2,766,665	+		MIT1002_02477	0.20	-0.2
2,766,673	-		MIT1002_02477	0.21	-0.7
2,766,673	-		MIT1002_02477	0.21	-1.1
2,766,784	-		MIT1002_02477	0.36	-0.2
2,766,795	+		MIT1002_02477	0.37	+0.3
2,766,795	+		MIT1002_02477	0.37	+0.8
2,766,795	+		MIT1002_02477	0.37	+0.6
2,766,795	+		MIT1002_02477	0.37	+1.4
2,766,801	-		MIT1002_02477	0.38	-0.4
2,766,801	-		MIT1002_02477	0.38	+1.0
2,766,803	-		MIT1002_02477	0.38	+1.7
2,766,803	-		MIT1002_02477	0.38	-1.8
2,766,803	-		MIT1002_02477	0.38	-0.4
2,766,811	+		MIT1002_02477	0.39	-0.9
2,766,819	-		MIT1002_02477	0.41	-2.1
2,766,847	-		MIT1002_02477	0.44	+0.2
2,766,857	-		MIT1002_02477	0.46	+0.5
2,766,873	+		MIT1002_02477	0.48	+1.5
2,766,935	-		MIT1002_02477	0.56	+0.3
2,766,935	-		MIT1002_02477	0.56	-0.9
2,766,936	-		MIT1002_02477	0.56	-0.6
2,766,945	-		MIT1002_02477	0.58	-1.2