Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02422

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
2,702,830	-		MIT1002_02421	0.52	+0.3
2,702,830	-		MIT1002_02421	0.52	-1.5
2,702,851	+		MIT1002_02421	0.53	-0.0
2,702,902	+		MIT1002_02421	0.56	+0.2
2,702,905	-		MIT1002_02421	0.56	-0.2
2,702,945	+		MIT1002_02421	0.59	+0.2
2,702,960	+		MIT1002_02421	0.59	+1.4
2,703,056	+		MIT1002_02421	0.65	-0.7
2,703,116	-		MIT1002_02421	0.68	+2.0
2,703,141	+		MIT1002_02421	0.70	+0.4
2,703,149	-		MIT1002_02421	0.70	-0.8
2,703,149	-		MIT1002_02421	0.70	+1.0
2,703,266	+		MIT1002_02421	0.77	+0.2
2,703,274	-		MIT1002_02421	0.77	-1.4
2,703,333	-		MIT1002_02421	0.80	+0.2
2,703,350	-		MIT1002_02421	0.81	+0.5
2,703,371	+		MIT1002_02421	0.83	+1.7
2,703,379	-		MIT1002_02421	0.83	-0.0
2,703,390	-		MIT1002_02421	0.84	+1.8
2,703,396	+		MIT1002_02421	0.84	-0.0
2,703,420	+		MIT1002_02421	0.85	-0.6
2,703,459	+		MIT1002_02421	0.88	-0.7
2,703,467	-		MIT1002_02421	0.88	+1.6
2,703,467	-		MIT1002_02421	0.88	+0.3
2,703,467	-		MIT1002_02421	0.88	+0.5
2,703,467	-		MIT1002_02421	0.88	-2.5
2,703,467	-		MIT1002_02421	0.88	-0.3
2,703,467	-		MIT1002_02421	0.88	+1.2
2,703,482	-		MIT1002_02421	0.89	+0.7
2,703,503	-				-0.9
2,703,503	-				+2.3
2,703,517	+				-0.7
2,703,517	+				+0.3
2,703,517	+				+0.7
2,703,517	+				+0.9
2,703,525	-				-1.4
2,703,525	-				-0.2
2,703,570	+				+0.3
2,703,594	-				+0.7
2,703,596	+				-0.3
2,703,604	-				+2.3
2,703,625	-				+0.4
2,703,734	+				+0.8
2,703,780	+				-0.5
2,703,780	+				-2.1
2,703,780	+				-2.4
2,703,858	+				-1.8
2,703,907	+		MIT1002_02422	0.10	-1.4
2,703,915	-		MIT1002_02422	0.11	-1.1
2,703,915	-		MIT1002_02422	0.11	-1.1
2,703,915	-		MIT1002_02422	0.11	+0.2
2,703,925	-		MIT1002_02422	0.11	-1.1
2,703,939	+		MIT1002_02422	0.12	+1.1
2,703,958	-		MIT1002_02422	0.13	+1.3
2,703,992	+		MIT1002_02422	0.15	-0.8
2,704,022	+		MIT1002_02422	0.17	+1.3
2,704,024	-		MIT1002_02422	0.17	+0.6
2,704,037	-		MIT1002_02422	0.17	-1.2
2,704,051	+		MIT1002_02422	0.18	+1.4
2,704,070	+		MIT1002_02422	0.19	-0.9
2,704,071	-		MIT1002_02422	0.19	+0.8
2,704,131	-		MIT1002_02422	0.22	+0.7
2,704,200	+		MIT1002_02422	0.26	-0.5
2,704,208	-		MIT1002_02422	0.27	-0.1
2,704,208	-		MIT1002_02422	0.27	-1.5
2,704,208	-		MIT1002_02422	0.27	-0.2
2,704,233	+		MIT1002_02422	0.28	-0.2
2,704,287	+		MIT1002_02422	0.31	+0.2
2,704,362	+		MIT1002_02422	0.35	-2.0
2,704,443	+		MIT1002_02422	0.39	-0.3
2,704,451	-		MIT1002_02422	0.40	-0.6
2,704,474	+		MIT1002_02422	0.41	-1.8
2,704,474	-		MIT1002_02422	0.41	-0.5
2,704,482	-		MIT1002_02422	0.41	-0.3
2,704,484	-		MIT1002_02422	0.41	-0.8
2,704,496	+		MIT1002_02422	0.42	+0.8
2,704,504	-		MIT1002_02422	0.42	-0.6
2,704,567	+		MIT1002_02422	0.46	-0.3
2,704,637	-		MIT1002_02422	0.50	+1.0
2,704,665	+		MIT1002_02422	0.51	-1.9
2,704,673	-		MIT1002_02422	0.52	-0.3
2,704,700	+		MIT1002_02422	0.53	+0.4
2,704,704	-		MIT1002_02422	0.53	-0.2
2,704,791	-		MIT1002_02422	0.58	-0.1
2,704,796	-		MIT1002_02422	0.58	-0.6
2,704,807	+		MIT1002_02422	0.59	-0.9
2,704,807	+		MIT1002_02422	0.59	+0.8
2,704,811	-		MIT1002_02422	0.59	-0.7
2,704,815	-		MIT1002_02422	0.59	-1.6
2,704,826	-		MIT1002_02422	0.60	-0.2
2,704,944	+		MIT1002_02422	0.66	-0.0
2,704,952	-		MIT1002_02422	0.67	+0.2
2,704,969	+		MIT1002_02422	0.68	+1.3
2,705,026	+		MIT1002_02422	0.71	+0.5
2,705,048	+		MIT1002_02422	0.72	+0.3
2,705,048	+		MIT1002_02422	0.72	-0.4
2,705,053	+		MIT1002_02422	0.72	-1.2
2,705,056	-		MIT1002_02422	0.72	-0.5
2,705,056	-		MIT1002_02422	0.72	+2.0
2,705,058	+		MIT1002_02422	0.72	+1.2
2,705,066	-		MIT1002_02422	0.73	+0.7
2,705,161	+		MIT1002_02422	0.78	-1.0
2,705,169	-		MIT1002_02422	0.78	+0.7
2,705,206	+		MIT1002_02422	0.80	-0.6
2,705,222	-		MIT1002_02422	0.81	-1.7
2,705,237	-		MIT1002_02422	0.82	+0.4
2,705,237	-		MIT1002_02422	0.82	-1.8
2,705,239	-		MIT1002_02422	0.82	+0.4
2,705,324	+		MIT1002_02422	0.87	-0.9
2,705,332	-		MIT1002_02422	0.87	+1.1
2,705,351	-		MIT1002_02422	0.88	+0.2
2,705,351	-		MIT1002_02422	0.88	-0.8
2,705,353	+		MIT1002_02422	0.88	-0.2
2,705,361	-		MIT1002_02422	0.89	+0.5
2,705,361	-		MIT1002_02422	0.89	-0.5
2,705,390	-				-2.1
2,705,438	+				-1.9
2,705,458	+				+0.7
2,705,458	+				+0.7
2,705,466	-				+0.8
2,705,466	-				-0.1
2,705,468	-				+0.4
2,705,470	+				+0.5
2,705,508	+				+0.7
2,705,514	+				+0.6
2,705,514	+				+0.6
2,705,524	-				+3.3
2,705,613	-				-1.2
2,705,617	+				-0.5
2,705,617	+				+0.0
2,705,649	-				+3.0
2,705,649	-				-2.2
2,705,863	-				+1.0
2,705,863	-				-1.5
2,705,863	-				-0.3
2,705,863	-				+0.2
2,705,885	+				+0.7
2,705,893	-				-0.2
2,706,088	+				+0.4
2,706,096	-				-0.4
2,706,159	+		MIT1002_02423	0.11	+0.6
2,706,159	+		MIT1002_02423	0.11	+1.3
2,706,201	+		MIT1002_02423	0.14	+0.8
2,706,298	-		MIT1002_02423	0.22	+1.0
2,706,309	+		MIT1002_02423	0.23	+0.4
2,706,309	+		MIT1002_02423	0.23	-1.3
2,706,309	+		MIT1002_02423	0.23	+0.6
2,706,317	-		MIT1002_02423	0.24	+0.7
2,706,317	-		MIT1002_02423	0.24	+0.4
2,706,337	+		MIT1002_02423	0.26	+0.9
2,706,337	+		MIT1002_02423	0.26	-1.1
2,706,394	-		MIT1002_02423	0.30	-0.1
2,706,394	-		MIT1002_02423	0.30	-0.4
2,706,430	-		MIT1002_02423	0.33	-0.2
2,706,433	+		MIT1002_02423	0.33	-0.7
2,706,441	-		MIT1002_02423	0.34	-0.6
2,706,480	-		MIT1002_02423	0.37	-1.4
2,706,483	+		MIT1002_02423	0.37	+3.4
2,706,491	-		MIT1002_02423	0.38	-2.2
2,706,551	+		MIT1002_02423	0.43	+1.4
2,706,551	+		MIT1002_02423	0.43	-1.9
2,706,553	+		MIT1002_02423	0.43	+0.9
2,706,559	-		MIT1002_02423	0.44	+0.2
2,706,565	+		MIT1002_02423	0.44	-0.2
2,706,565	+		MIT1002_02423	0.44	+0.1