Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02302

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
2,563,828	+		MIT1002_02301	0.31	+0.7
2,563,908	+		MIT1002_02301	0.38	-0.9
2,563,957	+		MIT1002_02301	0.43	-0.9
2,564,009	-		MIT1002_02301	0.47	-0.1
2,564,012	+		MIT1002_02301	0.47	+0.3
2,564,182	+		MIT1002_02301	0.62	+0.5
2,564,182	+		MIT1002_02301	0.62	-2.0
2,564,186	+		MIT1002_02301	0.63	+0.8
2,564,190	-		MIT1002_02301	0.63	-0.4
2,564,213	-		MIT1002_02301	0.65	+0.3
2,564,262	+		MIT1002_02301	0.69	+0.5
2,564,303	-		MIT1002_02301	0.73	+1.4
2,564,401	+		MIT1002_02301	0.82	-0.4
2,564,602	+				-0.4
2,564,667	+				-1.5
2,564,673	-				+0.7
2,564,755	-				+2.4
2,564,763	+				-1.1
2,564,771	-				-1.5
2,564,781	+				-0.9
2,564,781	+				+1.0
2,564,799	-				-1.1
2,564,821	+				+1.2
2,564,897	+				-1.2
2,564,900	-				+2.0
2,564,901	+				+1.0
2,564,947	+				-0.8
2,564,947	+				+3.0
2,564,955	-				-3.2
2,564,955	-				+0.4
2,564,955	-				-0.9
2,564,955	-				-0.4
2,565,031	-		MIT1002_02302	0.12	-0.5
2,565,036	-		MIT1002_02302	0.12	-0.1
2,565,158	-		MIT1002_02302	0.15	-0.3
2,565,198	+		MIT1002_02302	0.17	+1.5
2,565,271	+		MIT1002_02302	0.19	-0.9
2,565,274	-		MIT1002_02302	0.19	+2.2
2,565,313	-		MIT1002_02302	0.20	-0.4
2,565,323	-		MIT1002_02302	0.20	+0.7
2,565,323	-		MIT1002_02302	0.20	+0.6
2,565,329	+		MIT1002_02302	0.21	+0.5
2,565,345	-		MIT1002_02302	0.21	+1.0
2,565,485	-		MIT1002_02302	0.25	+0.5
2,565,953	-		MIT1002_02302	0.39	+0.6
2,566,032	-		MIT1002_02302	0.41	-0.8
2,566,247	+		MIT1002_02302	0.48	+1.3
2,566,247	+		MIT1002_02302	0.48	+0.4
2,566,255	-		MIT1002_02302	0.48	-1.8
2,566,260	+		MIT1002_02302	0.48	+0.7
2,566,260	-		MIT1002_02302	0.48	-1.7
2,566,260	-		MIT1002_02302	0.48	+1.3
2,566,290	-		MIT1002_02302	0.49	+0.3
2,566,446	-		MIT1002_02302	0.54	-1.0
2,566,458	+		MIT1002_02302	0.54	+1.7
2,566,458	+		MIT1002_02302	0.54	-1.2
2,566,542	-		MIT1002_02302	0.56	+0.1
2,566,566	+		MIT1002_02302	0.57	+0.2
2,566,569	+		MIT1002_02302	0.57	+0.6
2,566,679	-		MIT1002_02302	0.60	+1.0
2,566,684	-		MIT1002_02302	0.61	-0.5
2,566,686	-		MIT1002_02302	0.61	-1.6
2,566,688	+		MIT1002_02302	0.61	+0.2
2,566,702	+		MIT1002_02302	0.61	-0.8
2,566,725	-		MIT1002_02302	0.62	+1.7
2,566,735	+		MIT1002_02302	0.62	-0.6
2,566,758	+		MIT1002_02302	0.63	-1.0
2,566,795	+		MIT1002_02302	0.64	-0.8
2,566,809	-		MIT1002_02302	0.64	+0.2
2,566,818	+		MIT1002_02302	0.65	+0.2
2,566,818	+		MIT1002_02302	0.65	+0.0
2,566,826	-		MIT1002_02302	0.65	+0.6
2,566,826	-		MIT1002_02302	0.65	+0.5
2,566,826	-		MIT1002_02302	0.65	-0.4
2,566,868	+		MIT1002_02302	0.66	-0.3
2,566,881	-		MIT1002_02302	0.66	+0.9
2,566,931	+		MIT1002_02302	0.68	+0.2
2,567,015	+		MIT1002_02302	0.70	-2.1
2,567,015	+		MIT1002_02302	0.70	+0.3
2,567,023	-		MIT1002_02302	0.71	+1.4
2,567,118	-		MIT1002_02302	0.73	-0.1
2,567,120	+		MIT1002_02302	0.73	+3.0
2,567,120	+		MIT1002_02302	0.73	+0.9
2,567,120	+		MIT1002_02302	0.73	-1.6
2,567,120	+		MIT1002_02302	0.73	+1.0
2,567,128	-		MIT1002_02302	0.74	-0.4
2,567,128	-		MIT1002_02302	0.74	+0.1
2,567,128	-		MIT1002_02302	0.74	+0.2
2,567,128	-		MIT1002_02302	0.74	+0.0
2,567,128	-		MIT1002_02302	0.74	+1.0
2,567,128	-		MIT1002_02302	0.74	-1.0
2,567,128	-		MIT1002_02302	0.74	-1.7
2,567,128	-		MIT1002_02302	0.74	+1.2
2,567,128	-		MIT1002_02302	0.74	-0.3
2,567,128	-		MIT1002_02302	0.74	-0.5
2,567,128	-		MIT1002_02302	0.74	-0.3
2,567,153	+		MIT1002_02302	0.74	+1.8
2,567,232	+		MIT1002_02302	0.77	-1.1
2,567,250	+		MIT1002_02302	0.77	+1.1
2,567,266	+		MIT1002_02302	0.78	+1.5
2,567,266	+		MIT1002_02302	0.78	+0.1
2,567,266	+		MIT1002_02302	0.78	+0.8
2,567,274	-		MIT1002_02302	0.78	+0.6
2,567,274	-		MIT1002_02302	0.78	+0.3
2,567,274	-		MIT1002_02302	0.78	+1.6
2,567,274	-		MIT1002_02302	0.78	+1.0
2,567,274	-		MIT1002_02302	0.78	+0.6
2,567,274	-		MIT1002_02302	0.78	-0.7
2,567,274	-		MIT1002_02302	0.78	-0.9
2,567,274	-		MIT1002_02302	0.78	+0.7
2,567,274	-		MIT1002_02302	0.78	+0.3
2,567,274	-		MIT1002_02302	0.78	+1.6
2,567,274	-		MIT1002_02302	0.78	-1.5
2,567,274	-		MIT1002_02302	0.78	-0.3
2,567,303	-		MIT1002_02302	0.79	+0.0
2,567,305	+		MIT1002_02302	0.79	-1.7
2,567,313	-		MIT1002_02302	0.79	+0.5
2,567,313	-		MIT1002_02302	0.79	+0.3
2,567,313	-		MIT1002_02302	0.79	+0.5
2,567,318	-		MIT1002_02302	0.79	+0.8
2,567,318	-		MIT1002_02302	0.79	-0.7
2,567,318	-		MIT1002_02302	0.79	+1.8
2,567,336	+		MIT1002_02302	0.80	+1.0
2,567,336	+		MIT1002_02302	0.80	+0.5
2,567,336	+		MIT1002_02302	0.80	+1.4
2,567,344	-		MIT1002_02302	0.80	+0.3
2,567,344	-		MIT1002_02302	0.80	+0.8
2,567,344	-		MIT1002_02302	0.80	+2.6
2,567,345	+		MIT1002_02302	0.80	+0.2
2,567,399	+		MIT1002_02302	0.82	-0.8
2,567,399	+		MIT1002_02302	0.82	+0.6
2,567,407	-		MIT1002_02302	0.82	+0.0
2,567,426	+		MIT1002_02302	0.83	-1.0
2,567,434	-		MIT1002_02302	0.83	-2.6
2,567,434	-		MIT1002_02302	0.83	+1.5
2,567,434	-		MIT1002_02302	0.83	+0.4
2,567,447	+		MIT1002_02302	0.83	+0.9
2,567,498	+		MIT1002_02302	0.85	-0.7
2,567,500	-		MIT1002_02302	0.85	+0.3
2,567,531	-		MIT1002_02302	0.86	+0.5
2,567,531	-		MIT1002_02302	0.86	-0.3
2,567,531	-		MIT1002_02302	0.86	-1.5
2,567,531	-		MIT1002_02302	0.86	-0.2
2,567,585	-		MIT1002_02302	0.87	-0.2
2,567,585	-		MIT1002_02302	0.87	-1.1
2,567,592	-		MIT1002_02302	0.87	-0.6
2,567,719	-				-0.5
2,567,760	+				-0.3
2,567,768	-				-3.6
2,567,768	-				-0.2
2,568,006	+				+1.0
2,568,024	-				-2.8
2,568,034	+				+1.2
2,568,121	-				+0.2
2,568,219	+				-0.1
2,568,292	+				+0.5
2,568,344	-		MIT1002_02303	0.10	-0.8
2,568,351	+		MIT1002_02303	0.11	+0.7
2,568,387	+		MIT1002_02303	0.12	-2.4
2,568,445	+		MIT1002_02303	0.14	+1.5
2,568,486	+		MIT1002_02303	0.15	-0.6
2,568,527	-		MIT1002_02303	0.16	+0.2
2,568,599	+		MIT1002_02303	0.18	-0.2
2,568,616	+		MIT1002_02303	0.19	+0.4
2,568,747	+		MIT1002_02303	0.23	+1.4
2,568,876	-		MIT1002_02303	0.27	+1.0
2,568,899	+		MIT1002_02303	0.28	-0.7