Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_02277

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
2,535,737	-		MIT1002_02276	0.53	+0.8
2,535,744	-		MIT1002_02276	0.53	+0.2
2,535,789	+		MIT1002_02276	0.55	+0.1
2,535,789	+		MIT1002_02276	0.55	+2.4
2,535,797	-		MIT1002_02276	0.56	-0.8
2,535,805	+		MIT1002_02276	0.56	+0.7
2,535,831	+		MIT1002_02276	0.58	-0.1
2,535,836	+		MIT1002_02276	0.58	-0.1
2,535,845	+		MIT1002_02276	0.59	-0.4
2,535,846	+		MIT1002_02276	0.59	-0.1
2,535,853	-		MIT1002_02276	0.59	-2.2
2,535,853	-		MIT1002_02276	0.59	+0.4
2,535,853	-		MIT1002_02276	0.59	+0.1
2,535,853	-		MIT1002_02276	0.59	-2.2
2,535,854	-		MIT1002_02276	0.59	-0.1
2,535,854	-		MIT1002_02276	0.59	-2.0
2,535,854	-		MIT1002_02276	0.59	-0.1
2,535,858	+		MIT1002_02276	0.59	+0.4
2,535,863	+		MIT1002_02276	0.60	+0.9
2,535,871	-		MIT1002_02276	0.60	+0.0
2,535,871	-		MIT1002_02276	0.60	-1.1
2,535,871	-		MIT1002_02276	0.60	-0.4
2,535,871	-		MIT1002_02276	0.60	+0.2
2,535,871	-		MIT1002_02276	0.60	-1.2
2,535,871	-		MIT1002_02276	0.60	+0.2
2,535,873	+		MIT1002_02276	0.60	-0.2
2,535,876	-		MIT1002_02276	0.60	+0.4
2,535,876	-		MIT1002_02276	0.60	-1.2
2,535,957	+		MIT1002_02276	0.65	+1.9
2,536,111	-		MIT1002_02276	0.73	-1.8
2,536,176	+		MIT1002_02276	0.77	+11.3
2,536,271	+		MIT1002_02276	0.82	+0.6
2,536,284	-		MIT1002_02276	0.83	-1.5
2,536,353	+		MIT1002_02276	0.87	+0.7
2,536,379	+		MIT1002_02276	0.88	+0.1
2,536,464	+				-1.6
2,536,492	-				-1.4
2,536,492	-				-1.4
2,536,494	+				+0.5
2,536,494	+				-1.6
2,536,523	+				-0.8
2,536,533	+				+1.3
2,536,533	+				+1.0
2,536,541	-				+0.5
2,536,541	-				+0.3
2,536,541	-				-0.9
2,536,541	-				+2.0
2,536,541	-				+0.7
2,536,541	-				+0.2
2,536,543	+				-0.3
2,536,596	+				+0.3
2,536,596	+				+1.8
2,536,596	+				+0.5
2,536,596	+				+0.9
2,536,596	+				+1.5
2,536,596	-				+0.6
2,536,604	-				-0.1
2,536,604	-				+2.0
2,536,749	+				+1.5
2,536,749	+				+0.3
2,536,828	+				+0.1
2,536,836	-		MIT1002_02277	0.10	+5.8
2,536,836	-		MIT1002_02277	0.10	+1.0
2,536,868	-		MIT1002_02277	0.13	+2.0
2,536,880	-		MIT1002_02277	0.15	-0.6
2,536,880	-		MIT1002_02277	0.15	+1.6
2,536,921	+		MIT1002_02277	0.19	-0.5
2,536,929	-		MIT1002_02277	0.20	+0.0
2,536,936	-		MIT1002_02277	0.20	+0.6
2,536,972	+		MIT1002_02277	0.24	-1.3
2,536,993	+		MIT1002_02277	0.26	-0.8
2,537,025	-		MIT1002_02277	0.29	-0.7
2,537,046	+		MIT1002_02277	0.31	+0.8
2,537,054	-		MIT1002_02277	0.32	-0.2
2,537,104	-		MIT1002_02277	0.37	-2.0
2,537,344	-		MIT1002_02277	0.62	-0.4
2,537,346	+		MIT1002_02277	0.62	-1.4
2,537,354	-		MIT1002_02277	0.63	-0.7
2,537,354	-		MIT1002_02277	0.63	-0.2
2,537,354	-		MIT1002_02277	0.63	-2.2
2,537,354	-		MIT1002_02277	0.63	-0.3
2,537,365	+		MIT1002_02277	0.64	+0.1
2,537,401	+		MIT1002_02277	0.67	-1.6
2,537,409	-		MIT1002_02277	0.68	+0.2
2,537,468	+		MIT1002_02277	0.74	-1.8
2,537,476	-		MIT1002_02277	0.75	+0.9
2,537,481	+		MIT1002_02277	0.75	-1.0
2,537,501	+		MIT1002_02277	0.77	-1.2
2,537,503	+		MIT1002_02277	0.78	+0.0
2,537,511	-		MIT1002_02277	0.78	+1.1
2,537,511	-		MIT1002_02277	0.78	+0.5
2,537,511	-		MIT1002_02277	0.78	+0.5
2,537,511	-		MIT1002_02277	0.78	+0.4
2,537,539	-		MIT1002_02277	0.81	-1.4
2,537,577	-		MIT1002_02277	0.85	-0.3
2,537,613	-		MIT1002_02277	0.89	+0.5
2,537,680	+				+0.7
2,537,692	+				-0.2
2,537,692	+				+1.4
2,537,692	+				+3.1
2,537,700	-				+0.5
2,537,715	-				-0.0
2,537,742	+				-0.5
2,537,793	+				+0.7
2,537,801	-				+0.2
2,537,801	-				-1.8
2,537,828	+				-1.1
2,537,858	+				+0.3
2,537,914	-				-1.0
2,537,921	-				+2.2
2,537,986	+				+0.6
2,538,022	+				-0.4
2,538,042	+				+0.5
2,538,042	-				+1.3
2,538,050	-				-1.4
2,538,100	+				+0.1
2,538,107	-				+0.1
2,538,143	+				+1.6
2,538,168	+				-1.4
2,538,218	-		MIT1002_02278	0.10	-0.2
2,538,228	-		MIT1002_02278	0.11	+0.8
2,538,299	-		MIT1002_02278	0.14	+0.6
2,538,305	+		MIT1002_02278	0.14	+0.2
2,538,374	-		MIT1002_02278	0.17	-0.6
2,538,491	+		MIT1002_02278	0.22	+0.9
2,538,491	+		MIT1002_02278	0.22	+0.0
2,538,491	+		MIT1002_02278	0.22	+1.7
2,538,499	-		MIT1002_02278	0.22	+0.5
2,538,499	-		MIT1002_02278	0.22	-1.2
2,538,549	-		MIT1002_02278	0.25	+0.5
2,538,605	-		MIT1002_02278	0.27	+0.3
2,538,660	+		MIT1002_02278	0.29	-0.4
2,538,668	-		MIT1002_02278	0.30	-1.6
2,538,687	+		MIT1002_02278	0.31	-0.8
2,538,697	+		MIT1002_02278	0.31	-0.0
2,538,717	+		MIT1002_02278	0.32	-1.0