Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01105

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_01103 and MIT1002_01104 are separated by 48 nucleotidesMIT1002_01104 and MIT1002_01105 are separated by 34 nucleotidesMIT1002_01105 and MIT1002_01106 are separated by 12 nucleotides MIT1002_01103: MIT1002_01103 - Sigma-F factor, at 1,211,311 to 1,212,042 _01103 MIT1002_01104: MIT1002_01104 - Chemotaxis protein CheY, at 1,212,091 to 1,212,462 _01104 MIT1002_01105: MIT1002_01105 - chemotaxis regulator CheZ, at 1,212,497 to 1,213,252 _01105 MIT1002_01106: MIT1002_01106 - Chemotaxis protein CheA, at 1,213,265 to 1,215,499 _01106 Position (kb) 1212 1213 1214Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1211.518 kb on - strand, within MIT1002_01103at 1211.551 kb on - strand, within MIT1002_01103at 1211.571 kb on + strand, within MIT1002_01103at 1211.579 kb on - strand, within MIT1002_01103at 1211.579 kb on - strand, within MIT1002_01103at 1211.579 kb on - strand, within MIT1002_01103at 1211.579 kb on - strand, within MIT1002_01103at 1211.750 kb on - strand, within MIT1002_01103at 1211.812 kb on + strand, within MIT1002_01103at 1211.882 kb on - strand, within MIT1002_01103at 1211.904 kb on + strand, within MIT1002_01103at 1212.026 kb on - strandat 1212.084 kb on - strandat 1212.084 kb on - strandat 1212.208 kb on + strand, within MIT1002_01104at 1212.277 kb on - strand, within MIT1002_01104at 1212.335 kb on + strand, within MIT1002_01104at 1212.388 kb on - strand, within MIT1002_01104at 1212.405 kb on + strand, within MIT1002_01104at 1212.418 kb on - strand, within MIT1002_01104at 1212.451 kb on + strandat 1212.451 kb on + strandat 1212.555 kb on + strandat 1212.555 kb on + strandat 1212.563 kb on - strandat 1212.564 kb on - strandat 1212.566 kb on + strandat 1212.740 kb on + strand, within MIT1002_01105at 1212.847 kb on + strand, within MIT1002_01105at 1212.847 kb on + strand, within MIT1002_01105at 1212.855 kb on - strand, within MIT1002_01105at 1212.898 kb on + strand, within MIT1002_01105at 1212.940 kb on + strand, within MIT1002_01105at 1212.970 kb on - strand, within MIT1002_01105at 1213.007 kb on + strand, within MIT1002_01105at 1213.007 kb on - strand, within MIT1002_01105at 1213.053 kb on - strand, within MIT1002_01105at 1213.104 kb on + strand, within MIT1002_01105at 1213.104 kb on + strand, within MIT1002_01105at 1213.104 kb on + strand, within MIT1002_01105at 1213.122 kb on - strand, within MIT1002_01105at 1213.122 kb on - strand, within MIT1002_01105at 1213.137 kb on - strand, within MIT1002_01105at 1213.152 kb on + strand, within MIT1002_01105at 1213.152 kb on - strand, within MIT1002_01105at 1213.246 kb on - strandat 1213.306 kb on + strandat 1213.415 kb on + strandat 1213.415 kb on + strandat 1213.415 kb on + strandat 1213.415 kb on + strandat 1213.423 kb on - strandat 1213.423 kb on - strandat 1213.423 kb on - strandat 1213.423 kb on - strandat 1213.423 kb on - strandat 1213.423 kb on - strandat 1213.438 kb on - strandat 1213.446 kb on - strandat 1213.518 kb on + strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.526 kb on - strand, within MIT1002_01106at 1213.630 kb on - strand, within MIT1002_01106at 1213.664 kb on - strand, within MIT1002_01106at 1213.696 kb on + strand, within MIT1002_01106at 1213.713 kb on + strand, within MIT1002_01106at 1213.721 kb on - strand, within MIT1002_01106at 1213.736 kb on + strand, within MIT1002_01106at 1213.764 kb on + strand, within MIT1002_01106at 1213.845 kb on + strand, within MIT1002_01106at 1213.853 kb on - strand, within MIT1002_01106at 1213.853 kb on - strand, within MIT1002_01106at 1213.853 kb on - strand, within MIT1002_01106at 1213.853 kb on - strand, within MIT1002_01106at 1213.855 kb on + strand, within MIT1002_01106at 1213.855 kb on + strand, within MIT1002_01106at 1213.855 kb on + strand, within MIT1002_01106at 1213.855 kb on + strand, within MIT1002_01106at 1213.855 kb on + strand, within MIT1002_01106at 1213.855 kb on - strand, within MIT1002_01106at 1213.858 kb on - strand, within MIT1002_01106at 1213.863 kb on - strand, within MIT1002_01106at 1213.863 kb on - strand, within MIT1002_01106at 1213.873 kb on - strand, within MIT1002_01106at 1213.961 kb on - strand, within MIT1002_01106at 1214.035 kb on + strand, within MIT1002_01106at 1214.100 kb on + strand, within MIT1002_01106at 1214.100 kb on + strand, within MIT1002_01106at 1214.100 kb on + strand, within MIT1002_01106at 1214.100 kb on + strand, within MIT1002_01106at 1214.105 kb on + strand, within MIT1002_01106at 1214.108 kb on - strand, within MIT1002_01106at 1214.108 kb on - strand, within MIT1002_01106at 1214.108 kb on - strand, within MIT1002_01106at 1214.108 kb on - strand, within MIT1002_01106at 1214.108 kb on - strand, within MIT1002_01106at 1214.108 kb on - strand, within MIT1002_01106at 1214.108 kb on - strand, within MIT1002_01106at 1214.113 kb on - strand, within MIT1002_01106at 1214.113 kb on - strand, within MIT1002_01106at 1214.228 kb on + strand, within MIT1002_01106

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
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1,211,518 - MIT1002_01103 0.28 -0.8
1,211,551 - MIT1002_01103 0.33 -0.2
1,211,571 + MIT1002_01103 0.36 -0.4
1,211,579 - MIT1002_01103 0.37 -0.1
1,211,579 - MIT1002_01103 0.37 +1.2
1,211,579 - MIT1002_01103 0.37 -1.0
1,211,579 - MIT1002_01103 0.37 +0.1
1,211,750 - MIT1002_01103 0.60 +1.2
1,211,812 + MIT1002_01103 0.68 +0.1
1,211,882 - MIT1002_01103 0.78 -0.6
1,211,904 + MIT1002_01103 0.81 -1.4
1,212,026 - -0.9
1,212,084 - -1.3
1,212,084 - +0.4
1,212,208 + MIT1002_01104 0.31 -0.3
1,212,277 - MIT1002_01104 0.50 -1.5
1,212,335 + MIT1002_01104 0.66 -1.5
1,212,388 - MIT1002_01104 0.80 +0.4
1,212,405 + MIT1002_01104 0.84 -0.9
1,212,418 - MIT1002_01104 0.88 -0.2
1,212,451 + +0.7
1,212,451 + -0.2
1,212,555 + +0.7
1,212,555 + -2.7
1,212,563 - +0.2
1,212,564 - -0.7
1,212,566 + -1.6
1,212,740 + MIT1002_01105 0.32 -0.2
1,212,847 + MIT1002_01105 0.46 -1.2
1,212,847 + MIT1002_01105 0.46 -0.8
1,212,855 - MIT1002_01105 0.47 -1.9
1,212,898 + MIT1002_01105 0.53 -0.1
1,212,940 + MIT1002_01105 0.59 +0.3
1,212,970 - MIT1002_01105 0.63 +2.3
1,213,007 + MIT1002_01105 0.67 -0.0
1,213,007 - MIT1002_01105 0.67 +0.3
1,213,053 - MIT1002_01105 0.74 +0.1
1,213,104 + MIT1002_01105 0.80 +0.0
1,213,104 + MIT1002_01105 0.80 +0.7
1,213,104 + MIT1002_01105 0.80 -0.3
1,213,122 - MIT1002_01105 0.83 -0.2
1,213,122 - MIT1002_01105 0.83 +1.2
1,213,137 - MIT1002_01105 0.85 +1.0
1,213,152 + MIT1002_01105 0.87 +0.0
1,213,152 - MIT1002_01105 0.87 +0.4
1,213,246 - +1.0
1,213,306 + +1.6
1,213,415 + -0.4
1,213,415 + +0.4
1,213,415 + +0.1
1,213,415 + -0.9
1,213,423 - -0.4
1,213,423 - +1.0
1,213,423 - -1.6
1,213,423 - -1.8
1,213,423 - +0.0
1,213,423 - -0.2
1,213,438 - +0.7
1,213,446 - +0.8
1,213,518 + MIT1002_01106 0.11 -0.8
1,213,526 - MIT1002_01106 0.12 -0.5
1,213,526 - MIT1002_01106 0.12 +1.2
1,213,526 - MIT1002_01106 0.12 +1.9
1,213,526 - MIT1002_01106 0.12 +1.2
1,213,526 - MIT1002_01106 0.12 +2.2
1,213,526 - MIT1002_01106 0.12 -0.4
1,213,526 - MIT1002_01106 0.12 -0.9
1,213,526 - MIT1002_01106 0.12 +0.3
1,213,526 - MIT1002_01106 0.12 +0.5
1,213,526 - MIT1002_01106 0.12 +1.1
1,213,526 - MIT1002_01106 0.12 -1.4
1,213,526 - MIT1002_01106 0.12 -0.2
1,213,526 - MIT1002_01106 0.12 -0.9
1,213,630 - MIT1002_01106 0.16 +0.7
1,213,664 - MIT1002_01106 0.18 -0.2
1,213,696 + MIT1002_01106 0.19 -2.2
1,213,713 + MIT1002_01106 0.20 +0.5
1,213,721 - MIT1002_01106 0.20 -0.9
1,213,736 + MIT1002_01106 0.21 -1.4
1,213,764 + MIT1002_01106 0.22 -0.4
1,213,845 + MIT1002_01106 0.26 +0.5
1,213,853 - MIT1002_01106 0.26 +0.1
1,213,853 - MIT1002_01106 0.26 +0.2
1,213,853 - MIT1002_01106 0.26 -0.5
1,213,853 - MIT1002_01106 0.26 +0.8
1,213,855 + MIT1002_01106 0.26 -0.7
1,213,855 + MIT1002_01106 0.26 +0.2
1,213,855 + MIT1002_01106 0.26 -2.8
1,213,855 + MIT1002_01106 0.26 +2.6
1,213,855 + MIT1002_01106 0.26 -0.3
1,213,855 - MIT1002_01106 0.26 +0.8
1,213,858 - MIT1002_01106 0.27 -1.2
1,213,863 - MIT1002_01106 0.27 -0.3
1,213,863 - MIT1002_01106 0.27 -1.0
1,213,873 - MIT1002_01106 0.27 -0.6
1,213,961 - MIT1002_01106 0.31 +0.2
1,214,035 + MIT1002_01106 0.34 -2.3
1,214,100 + MIT1002_01106 0.37 -2.1
1,214,100 + MIT1002_01106 0.37 -0.2
1,214,100 + MIT1002_01106 0.37 +0.7
1,214,100 + MIT1002_01106 0.37 -2.2
1,214,105 + MIT1002_01106 0.38 -1.0
1,214,108 - MIT1002_01106 0.38 +0.9
1,214,108 - MIT1002_01106 0.38 -0.1
1,214,108 - MIT1002_01106 0.38 -2.2
1,214,108 - MIT1002_01106 0.38 -1.9
1,214,108 - MIT1002_01106 0.38 +0.1
1,214,108 - MIT1002_01106 0.38 -0.6
1,214,108 - MIT1002_01106 0.38 +0.6
1,214,113 - MIT1002_01106 0.38 -1.8
1,214,113 - MIT1002_01106 0.38 -1.4
1,214,228 + MIT1002_01106 0.43 +0.6

Or see this region's nucleotide sequence