Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_01029

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
1,141,427	+		MIT1002_01027	0.89	-4.8
1,141,435	-		MIT1002_01027	0.89	+0.7
1,141,492	-				-3.6
1,141,499	+				+0.4
1,141,499	+				+0.2
1,141,499	+				-2.6
1,141,499	+				-5.1
1,141,507	-				-1.2
1,141,507	-				-4.3
1,141,553	+				-3.0
1,141,561	+				-0.6
1,141,561	+				-4.1
1,141,569	-				-3.8
1,141,569	-				-5.2
1,141,569	-				-2.5
1,141,598	+				-0.7
1,141,606	-				-4.0
1,141,606	-				-1.3
1,141,616	+				-3.1
1,141,625	+				-0.5
1,141,643	-				-3.0
1,141,699	-				-3.2
1,141,709	-				-3.5
1,141,709	-				-1.3
1,141,709	-				-1.8
1,141,709	-				-5.4
1,141,714	-				-4.1
1,141,739	+				-3.9
1,141,753	-				-2.0
1,141,757	+				-2.6
1,141,757	+				+0.1
1,141,757	+				-4.7
1,141,765	-				-1.5
1,141,765	-				-1.6
1,141,765	-				-0.3
1,141,791	-				-4.4
1,141,996	-				-0.7
1,142,004	-				-2.3
1,142,058	+				+0.2
1,142,066	-				-3.2
1,142,131	+		MIT1002_01028	0.23	-0.9
1,142,131	-		MIT1002_01028	0.23	-0.5
1,142,161	+		MIT1002_01028	0.32	+2.2
1,142,167	-		MIT1002_01028	0.34	-0.4
1,142,203	-		MIT1002_01028	0.45	+0.1
1,142,246	-		MIT1002_01028	0.58	+1.7
1,142,354	+				-2.1
1,142,354	+				+1.2
1,142,376	-				+1.1
1,142,603	+		MIT1002_01029	0.31	-0.2
1,142,622	+		MIT1002_01029	0.34	-2.8
1,142,692	+		MIT1002_01029	0.46	-1.8
1,142,692	+		MIT1002_01029	0.46	-1.0
1,142,700	-		MIT1002_01029	0.47	-0.7
1,142,700	-		MIT1002_01029	0.47	+0.4
1,142,700	-		MIT1002_01029	0.47	-1.6
1,142,731	-		MIT1002_01029	0.52	+1.2
1,142,743	-		MIT1002_01029	0.54	-1.2
1,142,768	+		MIT1002_01029	0.59	+1.8
1,142,785	+		MIT1002_01029	0.62	+0.0
1,142,818	+		MIT1002_01029	0.67	+0.5
1,142,818	+		MIT1002_01029	0.67	-2.1
1,142,818	+		MIT1002_01029	0.67	+0.9
1,142,826	+		MIT1002_01029	0.69	-0.1
1,142,826	-		MIT1002_01029	0.69	-1.1
1,142,826	-		MIT1002_01029	0.69	+0.4
1,142,826	-		MIT1002_01029	0.69	-1.5
1,142,908	+		MIT1002_01029	0.82	+0.9
1,143,009	+				+1.0
1,143,046	-				+2.0
1,143,066	+				-0.1
1,143,074	-				-2.7
1,143,074	-				-1.2
1,143,074	-				+2.4
1,143,076	+				+0.1
1,143,082	-				-0.8
1,143,082	-				+0.4
1,143,097	-				+0.2
1,143,097	-				-0.9
1,143,201	+		MIT1002_01030	0.23	+0.4
1,143,207	-		MIT1002_01030	0.28	+0.0
1,143,209	-		MIT1002_01030	0.29	+2.7
1,143,327	-				+1.2
1,143,465	-		MIT1002_01031	0.47	+0.3
1,143,466	-		MIT1002_01031	0.48	+1.2
1,143,466	-		MIT1002_01031	0.48	-1.4
1,143,471	-		MIT1002_01031	0.55	+1.2
1,143,475	+		MIT1002_01031	0.60	+0.1
1,143,483	-		MIT1002_01031	0.71	+0.6
1,143,502	+				+1.4
1,143,575	-				-1.6
1,143,625	-				-0.4
1,143,735	+				-0.1
1,143,942	-				+0.6