Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00845 and MIT1002_00846 are separated by 211 nucleotides MIT1002_00846 and MIT1002_00847 are separated by 42 nucleotides MIT1002_00847 and MIT1002_00848 are separated by 239 nucleotides MIT1002_00848 and MIT1002_00849 are separated by 85 nucleotides
MIT1002_00845: MIT1002_00845 - putative transcriptional regulatory protein YeeN, at 926,394 to 927,116
_00845
MIT1002_00846: MIT1002_00846 - Major NAD(P)H-flavin oxidoreductase, at 927,328 to 927,984
_00846
MIT1002_00847: MIT1002_00847 - hypothetical protein, at 928,027 to 928,302
_00847
MIT1002_00848: MIT1002_00848 - hypothetical protein, at 928,542 to 928,868
_00848
MIT1002_00849: MIT1002_00849 - bifunctional preprotein translocase subunit SecD/SecF, at 928,954 to 931,521
_00849
Position (kb) 927
928 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 926.339 kb on - strand at 926.437 kb on - strand at 926.619 kb on + strand, within MIT1002_00845 at 926.627 kb on + strand, within MIT1002_00845 at 926.657 kb on - strand, within MIT1002_00845 at 926.658 kb on - strand, within MIT1002_00845 at 926.713 kb on + strand, within MIT1002_00845 at 926.744 kb on - strand, within MIT1002_00845 at 926.773 kb on - strand, within MIT1002_00845 at 926.896 kb on - strand, within MIT1002_00845 at 926.930 kb on + strand, within MIT1002_00845 at 926.930 kb on + strand, within MIT1002_00845 at 926.945 kb on + strand, within MIT1002_00845 at 926.953 kb on - strand, within MIT1002_00845 at 926.953 kb on - strand, within MIT1002_00845 at 927.078 kb on - strand at 927.092 kb on + strand at 927.158 kb on - strand at 927.360 kb on + strand at 927.381 kb on - strand at 927.429 kb on + strand, within MIT1002_00846 at 927.466 kb on - strand, within MIT1002_00846 at 927.466 kb on - strand, within MIT1002_00846 at 927.484 kb on + strand, within MIT1002_00846 at 927.515 kb on - strand, within MIT1002_00846 at 927.515 kb on - strand, within MIT1002_00846 at 927.528 kb on - strand, within MIT1002_00846 at 927.557 kb on - strand, within MIT1002_00846 at 927.678 kb on + strand, within MIT1002_00846 at 927.678 kb on + strand, within MIT1002_00846 at 927.713 kb on - strand, within MIT1002_00846 at 927.744 kb on - strand, within MIT1002_00846 at 927.749 kb on - strand, within MIT1002_00846 at 927.753 kb on + strand, within MIT1002_00846 at 927.763 kb on + strand, within MIT1002_00846 at 927.801 kb on - strand, within MIT1002_00846 at 927.801 kb on - strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.852 kb on + strand, within MIT1002_00846 at 927.860 kb on - strand, within MIT1002_00846 at 927.862 kb on + strand, within MIT1002_00846 at 927.906 kb on + strand, within MIT1002_00846 at 927.979 kb on + strand at 928.017 kb on - strand at 928.020 kb on + strand at 928.088 kb on + strand, within MIT1002_00847 at 928.184 kb on + strand, within MIT1002_00847 at 928.192 kb on - strand, within MIT1002_00847 at 928.192 kb on - strand, within MIT1002_00847 at 928.195 kb on - strand, within MIT1002_00847 at 928.312 kb on + strand at 928.326 kb on - strand at 928.419 kb on + strand at 928.443 kb on - strand at 928.451 kb on - strand at 928.451 kb on - strand at 928.453 kb on - strand at 928.569 kb on - strand at 928.626 kb on - strand, within MIT1002_00848 at 928.629 kb on + strand, within MIT1002_00848 at 928.637 kb on - strand, within MIT1002_00848 at 928.637 kb on - strand, within MIT1002_00848 at 928.645 kb on - strand, within MIT1002_00848 at 928.670 kb on + strand, within MIT1002_00848 at 928.729 kb on + strand, within MIT1002_00848 at 928.784 kb on + strand, within MIT1002_00848 at 928.784 kb on + strand, within MIT1002_00848 at 928.784 kb on + strand, within MIT1002_00848 at 928.792 kb on - strand, within MIT1002_00848 at 928.801 kb on + strand, within MIT1002_00848 at 928.803 kb on + strand, within MIT1002_00848 at 928.803 kb on + strand, within MIT1002_00848 at 928.804 kb on - strand, within MIT1002_00848 at 928.818 kb on + strand, within MIT1002_00848 at 928.846 kb on + strand at 928.858 kb on - strand at 928.859 kb on - strand at 928.860 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6 remove 926,339 - -2.6 926,437 - -0.2 926,619 + MIT1002_00845 0.31 +0.4 926,627 + MIT1002_00845 0.32 +1.1 926,657 - MIT1002_00845 0.36 -0.8 926,658 - MIT1002_00845 0.37 -2.2 926,713 + MIT1002_00845 0.44 +1.2 926,744 - MIT1002_00845 0.48 -0.5 926,773 - MIT1002_00845 0.52 -2.1 926,896 - MIT1002_00845 0.69 +0.5 926,930 + MIT1002_00845 0.74 +2.2 926,930 + MIT1002_00845 0.74 -2.0 926,945 + MIT1002_00845 0.76 -1.6 926,953 - MIT1002_00845 0.77 -0.6 926,953 - MIT1002_00845 0.77 -0.9 927,078 - -0.9 927,092 + +0.2 927,158 - +0.1 927,360 + -1.8 927,381 - -0.2 927,429 + MIT1002_00846 0.15 -1.0 927,466 - MIT1002_00846 0.21 -0.3 927,466 - MIT1002_00846 0.21 -1.1 927,484 + MIT1002_00846 0.24 +0.4 927,515 - MIT1002_00846 0.28 -0.5 927,515 - MIT1002_00846 0.28 +1.1 927,528 - MIT1002_00846 0.30 -0.4 927,557 - MIT1002_00846 0.35 +0.2 927,678 + MIT1002_00846 0.53 +0.1 927,678 + MIT1002_00846 0.53 -2.8 927,713 - MIT1002_00846 0.59 -0.8 927,744 - MIT1002_00846 0.63 +1.3 927,749 - MIT1002_00846 0.64 +1.7 927,753 + MIT1002_00846 0.65 -0.7 927,763 + MIT1002_00846 0.66 +1.2 927,801 - MIT1002_00846 0.72 -1.2 927,801 - MIT1002_00846 0.72 +0.5 927,852 + MIT1002_00846 0.80 -0.5 927,852 + MIT1002_00846 0.80 +0.1 927,852 + MIT1002_00846 0.80 +0.9 927,852 + MIT1002_00846 0.80 +1.3 927,860 - MIT1002_00846 0.81 -1.5 927,862 + MIT1002_00846 0.81 +1.0 927,906 + MIT1002_00846 0.88 +1.4 927,979 + +1.3 928,017 - -0.2 928,020 + -1.4 928,088 + MIT1002_00847 0.22 -1.1 928,184 + MIT1002_00847 0.57 -0.5 928,192 - MIT1002_00847 0.60 +1.9 928,192 - MIT1002_00847 0.60 -0.3 928,195 - MIT1002_00847 0.61 +1.1 928,312 + -0.3 928,326 - -0.3 928,419 + -0.7 928,443 - +1.2 928,451 - -0.4 928,451 - +0.6 928,453 - +0.6 928,569 - -0.5 928,626 - MIT1002_00848 0.26 +1.0 928,629 + MIT1002_00848 0.27 -1.0 928,637 - MIT1002_00848 0.29 -1.4 928,637 - MIT1002_00848 0.29 -0.1 928,645 - MIT1002_00848 0.31 -0.9 928,670 + MIT1002_00848 0.39 -0.9 928,729 + MIT1002_00848 0.57 -0.8 928,784 + MIT1002_00848 0.74 -0.3 928,784 + MIT1002_00848 0.74 -0.5 928,784 + MIT1002_00848 0.74 -1.1 928,792 - MIT1002_00848 0.76 -1.1 928,801 + MIT1002_00848 0.79 -2.6 928,803 + MIT1002_00848 0.80 +0.9 928,803 + MIT1002_00848 0.80 +2.2 928,804 - MIT1002_00848 0.80 +3.0 928,818 + MIT1002_00848 0.84 -2.5 928,846 + +0.8 928,858 - -0.6 928,859 - -0.9 928,860 - +0.8
Or see this region's nucleotide sequence