Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00821

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00820 and MIT1002_00821 are separated by 222 nucleotidesMIT1002_00821 and MIT1002_00822 are separated by 51 nucleotides MIT1002_00820: MIT1002_00820 - Spondin_N, at 904,413 to 905,228 _00820 MIT1002_00821: MIT1002_00821 - Staphylococcal respiratory response protein A, at 905,451 to 906,203 _00821 MIT1002_00822: MIT1002_00822 - Magnesium transporter MgtE, at 906,255 to 907,613 _00822 Position (kb) 905 906 907Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 904.455 kb on - strandat 904.464 kb on + strandat 904.466 kb on + strandat 904.474 kb on - strandat 904.474 kb on - strandat 904.476 kb on + strandat 904.476 kb on + strandat 904.535 kb on + strand, within MIT1002_00820at 904.535 kb on + strand, within MIT1002_00820at 904.535 kb on + strand, within MIT1002_00820at 904.535 kb on + strand, within MIT1002_00820at 904.538 kb on - strand, within MIT1002_00820at 904.628 kb on - strand, within MIT1002_00820at 904.656 kb on + strand, within MIT1002_00820at 904.668 kb on - strand, within MIT1002_00820at 904.687 kb on + strand, within MIT1002_00820at 904.697 kb on + strand, within MIT1002_00820at 904.705 kb on - strand, within MIT1002_00820at 904.713 kb on + strand, within MIT1002_00820at 904.721 kb on - strand, within MIT1002_00820at 904.757 kb on + strand, within MIT1002_00820at 904.773 kb on - strand, within MIT1002_00820at 904.790 kb on + strand, within MIT1002_00820at 904.800 kb on + strand, within MIT1002_00820at 904.800 kb on + strand, within MIT1002_00820at 904.853 kb on + strand, within MIT1002_00820at 904.870 kb on + strand, within MIT1002_00820at 904.892 kb on - strand, within MIT1002_00820at 904.892 kb on - strand, within MIT1002_00820at 904.960 kb on - strand, within MIT1002_00820at 904.977 kb on + strand, within MIT1002_00820at 904.986 kb on + strand, within MIT1002_00820at 905.073 kb on - strand, within MIT1002_00820at 905.111 kb on + strand, within MIT1002_00820at 905.113 kb on + strand, within MIT1002_00820at 905.119 kb on - strand, within MIT1002_00820at 905.203 kb on + strandat 905.572 kb on - strand, within MIT1002_00821at 905.576 kb on + strand, within MIT1002_00821at 905.655 kb on + strand, within MIT1002_00821at 905.734 kb on + strand, within MIT1002_00821at 905.742 kb on - strand, within MIT1002_00821at 905.826 kb on - strand, within MIT1002_00821at 905.828 kb on - strand, within MIT1002_00821at 905.848 kb on - strand, within MIT1002_00821at 905.850 kb on + strand, within MIT1002_00821at 905.850 kb on + strand, within MIT1002_00821at 905.855 kb on + strand, within MIT1002_00821at 905.857 kb on + strand, within MIT1002_00821at 905.865 kb on - strand, within MIT1002_00821at 905.865 kb on - strand, within MIT1002_00821at 905.870 kb on + strand, within MIT1002_00821at 905.885 kb on + strand, within MIT1002_00821at 905.938 kb on + strand, within MIT1002_00821at 905.946 kb on + strand, within MIT1002_00821at 905.946 kb on + strand, within MIT1002_00821at 905.954 kb on - strand, within MIT1002_00821at 906.023 kb on + strand, within MIT1002_00821at 906.023 kb on + strand, within MIT1002_00821at 906.024 kb on + strand, within MIT1002_00821at 906.024 kb on + strand, within MIT1002_00821at 906.045 kb on + strand, within MIT1002_00821at 906.045 kb on + strand, within MIT1002_00821at 906.047 kb on - strand, within MIT1002_00821at 906.053 kb on - strand, within MIT1002_00821at 906.060 kb on + strand, within MIT1002_00821at 906.085 kb on + strand, within MIT1002_00821at 906.140 kb on + strandat 906.169 kb on - strandat 906.198 kb on - strandat 906.212 kb on - strandat 906.212 kb on - strandat 906.240 kb on - strandat 906.355 kb on - strandat 906.383 kb on - strandat 906.390 kb on + strandat 906.398 kb on - strand, within MIT1002_00822at 906.398 kb on - strand, within MIT1002_00822at 906.568 kb on - strand, within MIT1002_00822at 906.570 kb on + strand, within MIT1002_00822at 906.570 kb on + strand, within MIT1002_00822at 906.578 kb on - strand, within MIT1002_00822at 906.614 kb on + strand, within MIT1002_00822at 906.748 kb on - strand, within MIT1002_00822at 906.763 kb on - strand, within MIT1002_00822at 906.763 kb on - strand, within MIT1002_00822at 906.797 kb on + strand, within MIT1002_00822at 906.966 kb on - strand, within MIT1002_00822at 907.046 kb on + strand, within MIT1002_00822at 907.107 kb on - strand, within MIT1002_00822at 907.114 kb on + strand, within MIT1002_00822at 907.131 kb on + strand, within MIT1002_00822at 907.139 kb on - strand, within MIT1002_00822at 907.142 kb on + strand, within MIT1002_00822at 907.149 kb on + strand, within MIT1002_00822at 907.149 kb on + strand, within MIT1002_00822at 907.162 kb on - strand, within MIT1002_00822

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
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904,455 - +1.2
904,464 + -0.4
904,466 + +0.6
904,474 - -0.5
904,474 - +0.9
904,476 + +1.1
904,476 + +0.2
904,535 + MIT1002_00820 0.15 -0.6
904,535 + MIT1002_00820 0.15 -1.3
904,535 + MIT1002_00820 0.15 +1.2
904,535 + MIT1002_00820 0.15 -1.6
904,538 - MIT1002_00820 0.15 -0.4
904,628 - MIT1002_00820 0.26 -0.7
904,656 + MIT1002_00820 0.30 +0.9
904,668 - MIT1002_00820 0.31 +1.2
904,687 + MIT1002_00820 0.34 +0.8
904,697 + MIT1002_00820 0.35 -0.4
904,705 - MIT1002_00820 0.36 +1.1
904,713 + MIT1002_00820 0.37 -0.1
904,721 - MIT1002_00820 0.38 -1.7
904,757 + MIT1002_00820 0.42 -0.1
904,773 - MIT1002_00820 0.44 +0.1
904,790 + MIT1002_00820 0.46 -0.7
904,800 + MIT1002_00820 0.47 +0.0
904,800 + MIT1002_00820 0.47 +1.2
904,853 + MIT1002_00820 0.54 -0.2
904,870 + MIT1002_00820 0.56 +0.7
904,892 - MIT1002_00820 0.59 -1.1
904,892 - MIT1002_00820 0.59 -0.9
904,960 - MIT1002_00820 0.67 +0.6
904,977 + MIT1002_00820 0.69 +0.4
904,986 + MIT1002_00820 0.70 +0.9
905,073 - MIT1002_00820 0.81 -1.8
905,111 + MIT1002_00820 0.86 +0.5
905,113 + MIT1002_00820 0.86 +0.7
905,119 - MIT1002_00820 0.87 -0.2
905,203 + -0.6
905,572 - MIT1002_00821 0.16 +1.1
905,576 + MIT1002_00821 0.17 +0.3
905,655 + MIT1002_00821 0.27 -0.5
905,734 + MIT1002_00821 0.38 +0.5
905,742 - MIT1002_00821 0.39 -0.5
905,826 - MIT1002_00821 0.50 -0.5
905,828 - MIT1002_00821 0.50 -2.5
905,848 - MIT1002_00821 0.53 -1.3
905,850 + MIT1002_00821 0.53 -0.2
905,850 + MIT1002_00821 0.53 +0.7
905,855 + MIT1002_00821 0.54 -1.6
905,857 + MIT1002_00821 0.54 +0.3
905,865 - MIT1002_00821 0.55 -0.1
905,865 - MIT1002_00821 0.55 -0.8
905,870 + MIT1002_00821 0.56 +0.9
905,885 + MIT1002_00821 0.58 -1.6
905,938 + MIT1002_00821 0.65 -2.2
905,946 + MIT1002_00821 0.66 +0.2
905,946 + MIT1002_00821 0.66 +0.3
905,954 - MIT1002_00821 0.67 -1.4
906,023 + MIT1002_00821 0.76 -0.5
906,023 + MIT1002_00821 0.76 -1.4
906,024 + MIT1002_00821 0.76 +1.1
906,024 + MIT1002_00821 0.76 -0.9
906,045 + MIT1002_00821 0.79 +0.4
906,045 + MIT1002_00821 0.79 +0.7
906,047 - MIT1002_00821 0.79 +0.2
906,053 - MIT1002_00821 0.80 -1.0
906,060 + MIT1002_00821 0.81 -0.4
906,085 + MIT1002_00821 0.84 -0.8
906,140 + +1.9
906,169 - +0.7
906,198 - -0.8
906,212 - +0.5
906,212 - +0.3
906,240 - -1.1
906,355 - +1.7
906,383 - +0.1
906,390 + +0.2
906,398 - MIT1002_00822 0.11 +0.9
906,398 - MIT1002_00822 0.11 -0.5
906,568 - MIT1002_00822 0.23 -0.9
906,570 + MIT1002_00822 0.23 -1.7
906,570 + MIT1002_00822 0.23 +0.3
906,578 - MIT1002_00822 0.24 -1.2
906,614 + MIT1002_00822 0.26 -1.2
906,748 - MIT1002_00822 0.36 -0.3
906,763 - MIT1002_00822 0.37 +0.2
906,763 - MIT1002_00822 0.37 -2.8
906,797 + MIT1002_00822 0.40 +1.9
906,966 - MIT1002_00822 0.52 +0.9
907,046 + MIT1002_00822 0.58 -0.2
907,107 - MIT1002_00822 0.63 -1.9
907,114 + MIT1002_00822 0.63 -0.4
907,131 + MIT1002_00822 0.64 -1.6
907,139 - MIT1002_00822 0.65 -0.5
907,142 + MIT1002_00822 0.65 +0.1
907,149 + MIT1002_00822 0.66 +0.2
907,149 + MIT1002_00822 0.66 -0.3
907,162 - MIT1002_00822 0.67 -1.7

Or see this region's nucleotide sequence