Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00720 and MIT1002_00721 are separated by 122 nucleotides MIT1002_00721 and MIT1002_00722 are separated by 92 nucleotides MIT1002_00722 and MIT1002_00723 are separated by 347 nucleotides
MIT1002_00720: MIT1002_00720 - hypothetical protein, at 788,260 to 788,631
_00720
MIT1002_00721: MIT1002_00721 - hypothetical protein, at 788,754 to 789,299
_00721
MIT1002_00722: MIT1002_00722 - Acyl-CoA dehydrogenase, at 789,392 to 791,152
_00722
MIT1002_00723: MIT1002_00723 - Cyclopentanol dehydrogenase, at 791,500 to 792,291
_00723
Position (kb) 789
790
791
792 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 788.412 kb on - strand, within MIT1002_00720 at 788.447 kb on + strand, within MIT1002_00720 at 788.452 kb on - strand, within MIT1002_00720 at 788.455 kb on - strand, within MIT1002_00720 at 788.528 kb on - strand, within MIT1002_00720 at 788.530 kb on - strand, within MIT1002_00720 at 788.588 kb on + strand, within MIT1002_00720 at 788.598 kb on + strand at 788.635 kb on + strand at 788.643 kb on - strand at 788.655 kb on + strand at 788.718 kb on + strand at 788.807 kb on - strand at 788.825 kb on + strand, within MIT1002_00721 at 788.878 kb on - strand, within MIT1002_00721 at 788.887 kb on + strand, within MIT1002_00721 at 788.900 kb on - strand, within MIT1002_00721 at 788.932 kb on + strand, within MIT1002_00721 at 788.971 kb on - strand, within MIT1002_00721 at 789.023 kb on + strand, within MIT1002_00721 at 789.028 kb on + strand, within MIT1002_00721 at 789.031 kb on - strand, within MIT1002_00721 at 789.031 kb on - strand, within MIT1002_00721 at 789.031 kb on - strand, within MIT1002_00721 at 789.054 kb on - strand, within MIT1002_00721 at 789.214 kb on + strand, within MIT1002_00721 at 789.367 kb on + strand at 789.367 kb on + strand at 789.367 kb on + strand at 789.367 kb on + strand at 789.367 kb on + strand at 789.372 kb on + strand at 789.375 kb on - strand at 789.375 kb on - strand at 789.375 kb on - strand at 789.375 kb on - strand at 789.375 kb on - strand at 789.474 kb on - strand at 789.507 kb on + strand at 789.567 kb on + strand at 789.569 kb on + strand, within MIT1002_00722 at 789.575 kb on - strand, within MIT1002_00722 at 789.577 kb on - strand, within MIT1002_00722 at 789.582 kb on - strand, within MIT1002_00722 at 789.582 kb on - strand, within MIT1002_00722 at 789.585 kb on - strand, within MIT1002_00722 at 789.599 kb on + strand, within MIT1002_00722 at 789.622 kb on + strand, within MIT1002_00722 at 789.638 kb on + strand, within MIT1002_00722 at 789.697 kb on + strand, within MIT1002_00722 at 789.705 kb on + strand, within MIT1002_00722 at 789.727 kb on - strand, within MIT1002_00722 at 789.801 kb on - strand, within MIT1002_00722 at 789.802 kb on + strand, within MIT1002_00722 at 789.808 kb on + strand, within MIT1002_00722 at 789.844 kb on + strand, within MIT1002_00722 at 789.907 kb on - strand, within MIT1002_00722 at 789.952 kb on - strand, within MIT1002_00722 at 789.971 kb on - strand, within MIT1002_00722 at 790.023 kb on + strand, within MIT1002_00722 at 790.038 kb on - strand, within MIT1002_00722 at 790.041 kb on - strand, within MIT1002_00722 at 790.069 kb on + strand, within MIT1002_00722 at 790.099 kb on + strand, within MIT1002_00722 at 790.116 kb on - strand, within MIT1002_00722 at 790.125 kb on + strand, within MIT1002_00722 at 790.146 kb on + strand, within MIT1002_00722 at 790.154 kb on - strand, within MIT1002_00722 at 790.169 kb on + strand, within MIT1002_00722 at 790.169 kb on + strand, within MIT1002_00722 at 790.169 kb on + strand, within MIT1002_00722 at 790.169 kb on + strand, within MIT1002_00722 at 790.169 kb on + strand, within MIT1002_00722 at 790.169 kb on + strand, within MIT1002_00722 at 790.169 kb on + strand, within MIT1002_00722 at 790.169 kb on + strand, within MIT1002_00722 at 790.177 kb on - strand, within MIT1002_00722 at 790.177 kb on - strand, within MIT1002_00722 at 790.177 kb on - strand, within MIT1002_00722 at 790.177 kb on - strand, within MIT1002_00722 at 790.208 kb on + strand, within MIT1002_00722 at 790.222 kb on + strand, within MIT1002_00722 at 790.222 kb on + strand, within MIT1002_00722 at 790.240 kb on + strand, within MIT1002_00722 at 790.240 kb on + strand, within MIT1002_00722 at 790.248 kb on - strand, within MIT1002_00722 at 790.248 kb on - strand, within MIT1002_00722 at 790.248 kb on - strand, within MIT1002_00722 at 790.248 kb on - strand, within MIT1002_00722 at 790.248 kb on - strand, within MIT1002_00722 at 790.249 kb on - strand, within MIT1002_00722 at 790.268 kb on - strand, within MIT1002_00722 at 790.298 kb on + strand, within MIT1002_00722 at 790.319 kb on + strand, within MIT1002_00722 at 790.328 kb on - strand, within MIT1002_00722 at 790.333 kb on + strand, within MIT1002_00722 at 790.405 kb on - strand, within MIT1002_00722 at 790.519 kb on - strand, within MIT1002_00722 at 790.519 kb on - strand, within MIT1002_00722 at 790.519 kb on - strand, within MIT1002_00722 at 790.539 kb on + strand, within MIT1002_00722 at 790.595 kb on + strand, within MIT1002_00722 at 790.612 kb on - strand, within MIT1002_00722 at 790.631 kb on + strand, within MIT1002_00722 at 790.647 kb on - strand, within MIT1002_00722 at 790.663 kb on + strand, within MIT1002_00722 at 790.663 kb on + strand, within MIT1002_00722 at 790.675 kb on - strand, within MIT1002_00722 at 790.694 kb on - strand, within MIT1002_00722 at 790.750 kb on + strand, within MIT1002_00722 at 790.787 kb on + strand, within MIT1002_00722 at 790.829 kb on - strand, within MIT1002_00722 at 790.838 kb on + strand, within MIT1002_00722 at 790.844 kb on + strand, within MIT1002_00722 at 790.922 kb on + strand, within MIT1002_00722 at 790.930 kb on - strand, within MIT1002_00722 at 790.941 kb on - strand, within MIT1002_00722 at 790.961 kb on + strand, within MIT1002_00722 at 790.982 kb on - strand at 791.136 kb on + strand at 791.141 kb on + strand at 791.141 kb on + strand at 791.141 kb on + strand at 791.141 kb on + strand at 791.148 kb on + strand at 791.148 kb on - strand at 791.198 kb on - strand at 791.303 kb on - strand at 791.321 kb on + strand at 791.370 kb on - strand at 791.443 kb on - strand at 791.449 kb on + strand at 791.462 kb on + strand at 791.594 kb on + strand, within MIT1002_00723 at 791.627 kb on - strand, within MIT1002_00723 at 791.635 kb on - strand, within MIT1002_00723 at 791.670 kb on - strand, within MIT1002_00723 at 791.772 kb on + strand, within MIT1002_00723 at 791.786 kb on + strand, within MIT1002_00723 at 791.804 kb on + strand, within MIT1002_00723 at 791.804 kb on + strand, within MIT1002_00723 at 791.804 kb on + strand, within MIT1002_00723 at 791.814 kb on - strand, within MIT1002_00723 at 791.847 kb on - strand, within MIT1002_00723 at 791.910 kb on - strand, within MIT1002_00723 at 791.915 kb on - strand, within MIT1002_00723 at 791.931 kb on + strand, within MIT1002_00723 at 791.933 kb on + strand, within MIT1002_00723 at 791.933 kb on + strand, within MIT1002_00723 at 791.933 kb on + strand, within MIT1002_00723 at 791.933 kb on + strand, within MIT1002_00723 at 791.938 kb on + strand, within MIT1002_00723 at 791.941 kb on - strand, within MIT1002_00723 at 791.941 kb on - strand, within MIT1002_00723 at 791.941 kb on - strand, within MIT1002_00723 at 792.026 kb on + strand, within MIT1002_00723 at 792.042 kb on - strand, within MIT1002_00723 at 792.072 kb on + strand, within MIT1002_00723 at 792.080 kb on - strand, within MIT1002_00723 at 792.120 kb on + strand, within MIT1002_00723
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6 remove 788,412 - MIT1002_00720 0.41 +0.2 788,447 + MIT1002_00720 0.50 +2.2 788,452 - MIT1002_00720 0.52 -0.4 788,455 - MIT1002_00720 0.52 +2.6 788,528 - MIT1002_00720 0.72 +1.8 788,530 - MIT1002_00720 0.73 +1.2 788,588 + MIT1002_00720 0.88 -1.9 788,598 + -1.5 788,635 + -0.3 788,643 - -0.8 788,655 + +0.6 788,718 + -1.9 788,807 - -0.2 788,825 + MIT1002_00721 0.13 -0.4 788,878 - MIT1002_00721 0.23 +0.9 788,887 + MIT1002_00721 0.24 -1.5 788,900 - MIT1002_00721 0.27 -1.4 788,932 + MIT1002_00721 0.33 +0.1 788,971 - MIT1002_00721 0.40 -1.8 789,023 + MIT1002_00721 0.49 -1.0 789,028 + MIT1002_00721 0.50 -2.1 789,031 - MIT1002_00721 0.51 -0.8 789,031 - MIT1002_00721 0.51 -1.2 789,031 - MIT1002_00721 0.51 +0.1 789,054 - MIT1002_00721 0.55 +0.0 789,214 + MIT1002_00721 0.84 +0.5 789,367 + -0.7 789,367 + +0.7 789,367 + +0.0 789,367 + -0.1 789,367 + +1.2 789,372 + -1.5 789,375 - -0.4 789,375 - -0.8 789,375 - +0.9 789,375 - +2.1 789,375 - -1.1 789,474 - -0.0 789,507 + -2.3 789,567 + +0.2 789,569 + MIT1002_00722 0.10 -1.1 789,575 - MIT1002_00722 0.10 +0.3 789,577 - MIT1002_00722 0.11 -0.2 789,582 - MIT1002_00722 0.11 +1.5 789,582 - MIT1002_00722 0.11 -0.1 789,585 - MIT1002_00722 0.11 -0.7 789,599 + MIT1002_00722 0.12 +1.6 789,622 + MIT1002_00722 0.13 -0.9 789,638 + MIT1002_00722 0.14 -1.0 789,697 + MIT1002_00722 0.17 -0.2 789,705 + MIT1002_00722 0.18 +0.6 789,727 - MIT1002_00722 0.19 -0.2 789,801 - MIT1002_00722 0.23 +0.3 789,802 + MIT1002_00722 0.23 +1.8 789,808 + MIT1002_00722 0.24 +1.2 789,844 + MIT1002_00722 0.26 +0.9 789,907 - MIT1002_00722 0.29 -0.4 789,952 - MIT1002_00722 0.32 -0.7 789,971 - MIT1002_00722 0.33 -3.1 790,023 + MIT1002_00722 0.36 +0.3 790,038 - MIT1002_00722 0.37 +0.6 790,041 - MIT1002_00722 0.37 -0.2 790,069 + MIT1002_00722 0.38 +0.4 790,099 + MIT1002_00722 0.40 -1.1 790,116 - MIT1002_00722 0.41 +1.5 790,125 + MIT1002_00722 0.42 +2.7 790,146 + MIT1002_00722 0.43 +1.0 790,154 - MIT1002_00722 0.43 -0.2 790,169 + MIT1002_00722 0.44 -0.4 790,169 + MIT1002_00722 0.44 -0.7 790,169 + MIT1002_00722 0.44 -0.1 790,169 + MIT1002_00722 0.44 +1.4 790,169 + MIT1002_00722 0.44 -1.5 790,169 + MIT1002_00722 0.44 -0.7 790,169 + MIT1002_00722 0.44 +2.2 790,169 + MIT1002_00722 0.44 -0.7 790,177 - MIT1002_00722 0.45 -0.2 790,177 - MIT1002_00722 0.45 -0.8 790,177 - MIT1002_00722 0.45 +0.5 790,177 - MIT1002_00722 0.45 +0.7 790,208 + MIT1002_00722 0.46 -0.0 790,222 + MIT1002_00722 0.47 -0.9 790,222 + MIT1002_00722 0.47 +0.7 790,240 + MIT1002_00722 0.48 -0.1 790,240 + MIT1002_00722 0.48 -0.3 790,248 - MIT1002_00722 0.49 -1.5 790,248 - MIT1002_00722 0.49 +0.3 790,248 - MIT1002_00722 0.49 +0.5 790,248 - MIT1002_00722 0.49 -0.9 790,248 - MIT1002_00722 0.49 -0.4 790,249 - MIT1002_00722 0.49 +1.2 790,268 - MIT1002_00722 0.50 -2.3 790,298 + MIT1002_00722 0.51 -0.6 790,319 + MIT1002_00722 0.53 -0.4 790,328 - MIT1002_00722 0.53 +0.4 790,333 + MIT1002_00722 0.53 -2.4 790,405 - MIT1002_00722 0.58 -0.6 790,519 - MIT1002_00722 0.64 -0.4 790,519 - MIT1002_00722 0.64 +0.7 790,519 - MIT1002_00722 0.64 -0.5 790,539 + MIT1002_00722 0.65 +1.0 790,595 + MIT1002_00722 0.68 -0.6 790,612 - MIT1002_00722 0.69 +0.9 790,631 + MIT1002_00722 0.70 +0.9 790,647 - MIT1002_00722 0.71 -0.1 790,663 + MIT1002_00722 0.72 -1.2 790,663 + MIT1002_00722 0.72 +0.7 790,675 - MIT1002_00722 0.73 -1.6 790,694 - MIT1002_00722 0.74 -1.3 790,750 + MIT1002_00722 0.77 +1.0 790,787 + MIT1002_00722 0.79 -1.6 790,829 - MIT1002_00722 0.82 +0.5 790,838 + MIT1002_00722 0.82 +1.1 790,844 + MIT1002_00722 0.82 +2.8 790,922 + MIT1002_00722 0.87 -1.8 790,930 - MIT1002_00722 0.87 +1.8 790,941 - MIT1002_00722 0.88 -0.0 790,961 + MIT1002_00722 0.89 +0.5 790,982 - -2.3 791,136 + +2.4 791,141 + -0.4 791,141 + +0.5 791,141 + +0.9 791,141 + +1.1 791,148 + +0.2 791,148 - -0.3 791,198 - -0.1 791,303 - -2.0 791,321 + +0.2 791,370 - +0.6 791,443 - -1.0 791,449 + +1.3 791,462 + +0.9 791,594 + MIT1002_00723 0.12 +0.1 791,627 - MIT1002_00723 0.16 +0.3 791,635 - MIT1002_00723 0.17 -0.0 791,670 - MIT1002_00723 0.21 -0.7 791,772 + MIT1002_00723 0.34 +1.7 791,786 + MIT1002_00723 0.36 -1.7 791,804 + MIT1002_00723 0.38 +1.2 791,804 + MIT1002_00723 0.38 -2.6 791,804 + MIT1002_00723 0.38 +1.2 791,814 - MIT1002_00723 0.40 +0.9 791,847 - MIT1002_00723 0.44 +1.2 791,910 - MIT1002_00723 0.52 +0.5 791,915 - MIT1002_00723 0.52 -2.3 791,931 + MIT1002_00723 0.54 -0.5 791,933 + MIT1002_00723 0.55 -0.4 791,933 + MIT1002_00723 0.55 +0.4 791,933 + MIT1002_00723 0.55 -0.6 791,933 + MIT1002_00723 0.55 -0.5 791,938 + MIT1002_00723 0.55 -1.7 791,941 - MIT1002_00723 0.56 +0.6 791,941 - MIT1002_00723 0.56 +0.4 791,941 - MIT1002_00723 0.56 -2.1 792,026 + MIT1002_00723 0.66 -0.3 792,042 - MIT1002_00723 0.68 -1.0 792,072 + MIT1002_00723 0.72 +0.6 792,080 - MIT1002_00723 0.73 -0.6 792,120 + MIT1002_00723 0.78 -1.1
Or see this region's nucleotide sequence