Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00698 and MIT1002_00699 are separated by 36 nucleotides MIT1002_00699 and MIT1002_00700 are separated by 86 nucleotides MIT1002_00700 and MIT1002_00701 are separated by 12 nucleotides MIT1002_00701 and MIT1002_00702 overlap by 17 nucleotides
MIT1002_00698: MIT1002_00698 - Nitrite reductase [NAD(P)H], at 762,900 to 765,449
_00698
MIT1002_00699: MIT1002_00699 - Nitrite reductase [NAD(P)H] small subunit, at 765,486 to 765,857
_00699
MIT1002_00700: MIT1002_00700 - Nitrate reductase, at 765,944 to 768,853
_00700
MIT1002_00701: MIT1002_00701 - Siroheme synthase, at 768,866 to 769,849
_00701
MIT1002_00702: MIT1002_00702 - Anthranilate phosphoribosyltransferase, at 769,833 to 770,819
_00702
Position (kb) 765
766
767
768
769 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 764.946 kb on - strand, within MIT1002_00698 at 764.997 kb on + strand, within MIT1002_00698 at 764.998 kb on + strand, within MIT1002_00698 at 765.051 kb on - strand, within MIT1002_00698 at 765.071 kb on - strand, within MIT1002_00698 at 765.148 kb on - strand, within MIT1002_00698 at 765.220 kb on + strand at 765.230 kb on + strand at 765.230 kb on + strand at 765.242 kb on + strand at 765.242 kb on + strand at 765.259 kb on + strand at 765.295 kb on + strand at 765.423 kb on - strand at 765.433 kb on - strand at 765.433 kb on - strand at 765.449 kb on + strand at 765.510 kb on - strand at 765.535 kb on + strand, within MIT1002_00699 at 765.543 kb on - strand, within MIT1002_00699 at 765.588 kb on + strand, within MIT1002_00699 at 765.596 kb on - strand, within MIT1002_00699 at 765.702 kb on + strand, within MIT1002_00699 at 765.744 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.779 kb on + strand, within MIT1002_00699 at 765.787 kb on - strand, within MIT1002_00699 at 765.817 kb on - strand, within MIT1002_00699 at 765.828 kb on - strand at 765.886 kb on + strand at 765.975 kb on + strand at 765.975 kb on + strand at 766.001 kb on + strand at 766.029 kb on - strand at 766.036 kb on - strand at 766.044 kb on + strand at 766.052 kb on - strand at 766.059 kb on + strand at 766.059 kb on + strand at 766.059 kb on + strand at 766.072 kb on - strand at 766.072 kb on - strand at 766.072 kb on - strand at 766.076 kb on + strand at 766.084 kb on - strand at 766.086 kb on + strand at 766.127 kb on - strand at 766.258 kb on - strand, within MIT1002_00700 at 766.294 kb on + strand, within MIT1002_00700 at 766.307 kb on + strand, within MIT1002_00700 at 766.378 kb on + strand, within MIT1002_00700 at 766.397 kb on + strand, within MIT1002_00700 at 766.402 kb on + strand, within MIT1002_00700 at 766.422 kb on + strand, within MIT1002_00700 at 766.571 kb on + strand, within MIT1002_00700 at 766.635 kb on + strand, within MIT1002_00700 at 766.645 kb on + strand, within MIT1002_00700 at 766.655 kb on + strand, within MIT1002_00700 at 766.673 kb on - strand, within MIT1002_00700 at 766.700 kb on + strand, within MIT1002_00700 at 766.782 kb on + strand, within MIT1002_00700 at 766.822 kb on + strand, within MIT1002_00700 at 766.859 kb on + strand, within MIT1002_00700 at 766.860 kb on + strand, within MIT1002_00700 at 766.868 kb on - strand, within MIT1002_00700 at 766.892 kb on + strand, within MIT1002_00700 at 766.892 kb on + strand, within MIT1002_00700 at 766.900 kb on - strand, within MIT1002_00700 at 766.944 kb on + strand, within MIT1002_00700 at 766.972 kb on + strand, within MIT1002_00700 at 766.972 kb on + strand, within MIT1002_00700 at 766.972 kb on + strand, within MIT1002_00700 at 766.980 kb on - strand, within MIT1002_00700 at 767.027 kb on + strand, within MIT1002_00700 at 767.027 kb on + strand, within MIT1002_00700 at 767.027 kb on + strand, within MIT1002_00700 at 767.056 kb on - strand, within MIT1002_00700 at 767.090 kb on - strand, within MIT1002_00700 at 767.115 kb on - strand, within MIT1002_00700 at 767.115 kb on - strand, within MIT1002_00700 at 767.115 kb on - strand, within MIT1002_00700 at 767.125 kb on + strand, within MIT1002_00700 at 767.173 kb on + strand, within MIT1002_00700 at 767.191 kb on - strand, within MIT1002_00700 at 767.381 kb on + strand, within MIT1002_00700 at 767.381 kb on + strand, within MIT1002_00700 at 767.406 kb on + strand, within MIT1002_00700 at 767.406 kb on + strand, within MIT1002_00700 at 767.406 kb on + strand, within MIT1002_00700 at 767.406 kb on + strand, within MIT1002_00700 at 767.414 kb on - strand, within MIT1002_00700 at 767.414 kb on - strand, within MIT1002_00700 at 767.414 kb on - strand, within MIT1002_00700 at 767.414 kb on - strand, within MIT1002_00700 at 767.414 kb on - strand, within MIT1002_00700 at 767.414 kb on - strand, within MIT1002_00700 at 767.414 kb on - strand, within MIT1002_00700 at 767.495 kb on + strand, within MIT1002_00700 at 767.495 kb on + strand, within MIT1002_00700 at 767.552 kb on + strand, within MIT1002_00700 at 767.564 kb on + strand, within MIT1002_00700 at 767.564 kb on + strand, within MIT1002_00700 at 767.564 kb on + strand, within MIT1002_00700 at 767.578 kb on + strand, within MIT1002_00700 at 767.585 kb on + strand, within MIT1002_00700 at 767.586 kb on - strand, within MIT1002_00700 at 767.634 kb on + strand, within MIT1002_00700 at 767.642 kb on - strand, within MIT1002_00700 at 767.677 kb on - strand, within MIT1002_00700 at 767.677 kb on - strand, within MIT1002_00700 at 767.677 kb on - strand, within MIT1002_00700 at 767.704 kb on + strand, within MIT1002_00700 at 767.725 kb on + strand, within MIT1002_00700 at 767.725 kb on + strand, within MIT1002_00700 at 767.733 kb on - strand, within MIT1002_00700 at 767.742 kb on - strand, within MIT1002_00700 at 767.753 kb on - strand, within MIT1002_00700 at 767.876 kb on + strand, within MIT1002_00700 at 767.893 kb on + strand, within MIT1002_00700 at 767.895 kb on - strand, within MIT1002_00700 at 767.938 kb on - strand, within MIT1002_00700 at 768.020 kb on - strand, within MIT1002_00700 at 768.068 kb on - strand, within MIT1002_00700 at 768.074 kb on + strand, within MIT1002_00700 at 768.074 kb on + strand, within MIT1002_00700 at 768.074 kb on + strand, within MIT1002_00700 at 768.082 kb on - strand, within MIT1002_00700 at 768.082 kb on - strand, within MIT1002_00700 at 768.117 kb on - strand, within MIT1002_00700 at 768.128 kb on + strand, within MIT1002_00700 at 768.158 kb on + strand, within MIT1002_00700 at 768.326 kb on + strand, within MIT1002_00700 at 768.343 kb on + strand, within MIT1002_00700 at 768.373 kb on + strand, within MIT1002_00700 at 768.438 kb on + strand, within MIT1002_00700 at 768.438 kb on + strand, within MIT1002_00700 at 768.446 kb on - strand, within MIT1002_00700 at 768.564 kb on + strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.564 kb on + strand at 768.572 kb on - strand at 768.572 kb on - strand at 768.603 kb on + strand at 768.638 kb on - strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.687 kb on + strand at 768.695 kb on - strand at 768.695 kb on - strand at 768.695 kb on - strand at 768.695 kb on - strand at 768.695 kb on - strand at 768.695 kb on - strand at 768.708 kb on + strand at 768.769 kb on - strand at 768.864 kb on - strand at 768.975 kb on - strand, within MIT1002_00701 at 768.989 kb on - strand, within MIT1002_00701 at 768.989 kb on - strand, within MIT1002_00701 at 769.087 kb on + strand, within MIT1002_00701 at 769.093 kb on - strand, within MIT1002_00701 at 769.154 kb on - strand, within MIT1002_00701 at 769.186 kb on + strand, within MIT1002_00701 at 769.223 kb on - strand, within MIT1002_00701 at 769.263 kb on + strand, within MIT1002_00701 at 769.264 kb on - strand, within MIT1002_00701 at 769.271 kb on - strand, within MIT1002_00701 at 769.423 kb on - strand, within MIT1002_00701 at 769.479 kb on + strand, within MIT1002_00701 at 769.497 kb on + strand, within MIT1002_00701 at 769.590 kb on - strand, within MIT1002_00701 at 769.615 kb on + strand, within MIT1002_00701 at 769.640 kb on + strand, within MIT1002_00701 at 769.640 kb on + strand, within MIT1002_00701 at 769.640 kb on + strand, within MIT1002_00701 at 769.648 kb on - strand, within MIT1002_00701 at 769.691 kb on - strand, within MIT1002_00701 at 769.732 kb on + strand, within MIT1002_00701 at 769.801 kb on + strand at 769.801 kb on + strand at 769.807 kb on - strand at 769.809 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6 remove 764,946 - MIT1002_00698 0.80 -2.2 764,997 + MIT1002_00698 0.82 -0.3 764,998 + MIT1002_00698 0.82 -3.0 765,051 - MIT1002_00698 0.84 -1.1 765,071 - MIT1002_00698 0.85 -0.7 765,148 - MIT1002_00698 0.88 -0.7 765,220 + +0.6 765,230 + -0.6 765,230 + +0.1 765,242 + -0.4 765,242 + -1.6 765,259 + +0.6 765,295 + -3.5 765,423 - -0.1 765,433 - -1.4 765,433 - +0.0 765,449 + +0.7 765,510 - -0.9 765,535 + MIT1002_00699 0.13 +0.4 765,543 - MIT1002_00699 0.15 +0.4 765,588 + MIT1002_00699 0.27 -0.4 765,596 - MIT1002_00699 0.30 +0.8 765,702 + MIT1002_00699 0.58 +0.6 765,744 + MIT1002_00699 0.69 -1.8 765,779 + MIT1002_00699 0.79 +1.0 765,779 + MIT1002_00699 0.79 -0.1 765,779 + MIT1002_00699 0.79 -0.0 765,787 - MIT1002_00699 0.81 +1.2 765,817 - MIT1002_00699 0.89 +2.2 765,828 - -0.4 765,886 + +0.3 765,975 + -0.6 765,975 + +0.1 766,001 + +0.4 766,029 - -0.4 766,036 - -0.7 766,044 + +1.2 766,052 - +0.6 766,059 + +0.0 766,059 + -1.2 766,059 + -0.0 766,072 - +1.9 766,072 - +0.3 766,072 - -0.9 766,076 + +0.5 766,084 - +0.4 766,086 + +1.6 766,127 - -1.0 766,258 - MIT1002_00700 0.11 -1.9 766,294 + MIT1002_00700 0.12 +1.1 766,307 + MIT1002_00700 0.12 +2.2 766,378 + MIT1002_00700 0.15 +1.0 766,397 + MIT1002_00700 0.16 -0.4 766,402 + MIT1002_00700 0.16 +0.5 766,422 + MIT1002_00700 0.16 -1.2 766,571 + MIT1002_00700 0.22 +1.0 766,635 + MIT1002_00700 0.24 +0.9 766,645 + MIT1002_00700 0.24 +1.2 766,655 + MIT1002_00700 0.24 +0.8 766,673 - MIT1002_00700 0.25 +1.7 766,700 + MIT1002_00700 0.26 -1.0 766,782 + MIT1002_00700 0.29 +2.4 766,822 + MIT1002_00700 0.30 +1.2 766,859 + MIT1002_00700 0.31 +0.2 766,860 + MIT1002_00700 0.31 +0.9 766,868 - MIT1002_00700 0.32 +1.6 766,892 + MIT1002_00700 0.33 +1.3 766,892 + MIT1002_00700 0.33 +0.9 766,900 - MIT1002_00700 0.33 +1.0 766,944 + MIT1002_00700 0.34 +0.6 766,972 + MIT1002_00700 0.35 -0.7 766,972 + MIT1002_00700 0.35 +1.1 766,972 + MIT1002_00700 0.35 +1.1 766,980 - MIT1002_00700 0.36 -0.0 767,027 + MIT1002_00700 0.37 +0.2 767,027 + MIT1002_00700 0.37 +2.2 767,027 + MIT1002_00700 0.37 +1.2 767,056 - MIT1002_00700 0.38 -1.7 767,090 - MIT1002_00700 0.39 -0.6 767,115 - MIT1002_00700 0.40 +0.4 767,115 - MIT1002_00700 0.40 -1.9 767,115 - MIT1002_00700 0.40 -1.9 767,125 + MIT1002_00700 0.41 -0.5 767,173 + MIT1002_00700 0.42 +1.6 767,191 - MIT1002_00700 0.43 -0.7 767,381 + MIT1002_00700 0.49 -1.4 767,381 + MIT1002_00700 0.49 -1.2 767,406 + MIT1002_00700 0.50 +0.0 767,406 + MIT1002_00700 0.50 -2.6 767,406 + MIT1002_00700 0.50 -0.3 767,406 + MIT1002_00700 0.50 +1.2 767,414 - MIT1002_00700 0.51 +1.6 767,414 - MIT1002_00700 0.51 +0.6 767,414 - MIT1002_00700 0.51 +0.6 767,414 - MIT1002_00700 0.51 -2.2 767,414 - MIT1002_00700 0.51 +0.3 767,414 - MIT1002_00700 0.51 -0.0 767,414 - MIT1002_00700 0.51 +1.6 767,495 + MIT1002_00700 0.53 -1.9 767,495 + MIT1002_00700 0.53 -1.2 767,552 + MIT1002_00700 0.55 +0.2 767,564 + MIT1002_00700 0.56 -1.5 767,564 + MIT1002_00700 0.56 -1.1 767,564 + MIT1002_00700 0.56 +1.9 767,578 + MIT1002_00700 0.56 -0.7 767,585 + MIT1002_00700 0.56 +1.1 767,586 - MIT1002_00700 0.56 +0.6 767,634 + MIT1002_00700 0.58 +0.3 767,642 - MIT1002_00700 0.58 -0.4 767,677 - MIT1002_00700 0.60 -0.1 767,677 - MIT1002_00700 0.60 +2.7 767,677 - MIT1002_00700 0.60 +0.9 767,704 + MIT1002_00700 0.60 +0.4 767,725 + MIT1002_00700 0.61 -0.4 767,725 + MIT1002_00700 0.61 -0.7 767,733 - MIT1002_00700 0.61 -0.6 767,742 - MIT1002_00700 0.62 -0.7 767,753 - MIT1002_00700 0.62 +0.7 767,876 + MIT1002_00700 0.66 -0.4 767,893 + MIT1002_00700 0.67 +1.1 767,895 - MIT1002_00700 0.67 -0.5 767,938 - MIT1002_00700 0.69 +0.8 768,020 - MIT1002_00700 0.71 +0.5 768,068 - MIT1002_00700 0.73 -0.7 768,074 + MIT1002_00700 0.73 +1.1 768,074 + MIT1002_00700 0.73 -0.1 768,074 + MIT1002_00700 0.73 -1.7 768,082 - MIT1002_00700 0.73 -2.5 768,082 - MIT1002_00700 0.73 -2.0 768,117 - MIT1002_00700 0.75 -1.4 768,128 + MIT1002_00700 0.75 +0.4 768,158 + MIT1002_00700 0.76 -2.6 768,326 + MIT1002_00700 0.82 -0.4 768,343 + MIT1002_00700 0.82 +0.3 768,373 + MIT1002_00700 0.83 +1.6 768,438 + MIT1002_00700 0.86 -0.7 768,438 + MIT1002_00700 0.86 +0.9 768,446 - MIT1002_00700 0.86 -0.9 768,564 + -0.4 768,564 + -1.1 768,564 + +1.2 768,564 + +0.4 768,572 - -0.6 768,572 - -0.0 768,603 + +1.5 768,638 - -0.1 768,687 + -0.4 768,687 + +0.5 768,687 + -1.1 768,687 + +1.6 768,687 + -0.6 768,687 + +1.4 768,687 + +0.8 768,687 + -0.3 768,687 + +0.9 768,687 + +0.3 768,695 - -0.3 768,695 - +2.6 768,695 - +0.6 768,695 - +1.1 768,695 - -0.3 768,695 - +0.5 768,708 + +2.2 768,769 - -1.6 768,864 - -0.2 768,975 - MIT1002_00701 0.11 +0.3 768,989 - MIT1002_00701 0.12 -0.6 768,989 - MIT1002_00701 0.12 +0.3 769,087 + MIT1002_00701 0.22 -0.2 769,093 - MIT1002_00701 0.23 +0.7 769,154 - MIT1002_00701 0.29 +0.2 769,186 + MIT1002_00701 0.33 +0.5 769,223 - MIT1002_00701 0.36 -1.2 769,263 + MIT1002_00701 0.40 -0.8 769,264 - MIT1002_00701 0.40 -0.4 769,271 - MIT1002_00701 0.41 -0.7 769,423 - MIT1002_00701 0.57 -0.5 769,479 + MIT1002_00701 0.62 -0.4 769,497 + MIT1002_00701 0.64 -1.6 769,590 - MIT1002_00701 0.74 -0.5 769,615 + MIT1002_00701 0.76 +2.5 769,640 + MIT1002_00701 0.79 -1.4 769,640 + MIT1002_00701 0.79 -0.5 769,640 + MIT1002_00701 0.79 -1.2 769,648 - MIT1002_00701 0.79 -0.2 769,691 - MIT1002_00701 0.84 -1.2 769,732 + MIT1002_00701 0.88 -0.7 769,801 + +0.4 769,801 + -1.2 769,807 - +1.3 769,809 - +0.0
Or see this region's nucleotide sequence