Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00694

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00692 and MIT1002_00693 are separated by 2 nucleotidesMIT1002_00693 and MIT1002_00694 are separated by 48 nucleotidesMIT1002_00694 and MIT1002_00695 are separated by 354 nucleotides MIT1002_00692: MIT1002_00692 - PAP2 superfamily protein, at 755,854 to 756,546 _00692 MIT1002_00693: MIT1002_00693 - hypothetical protein, at 756,549 to 757,193 _00693 MIT1002_00694: MIT1002_00694 - Nitrate regulatory protein, at 757,242 to 758,582 _00694 MIT1002_00695: MIT1002_00695 - hypothetical protein, at 758,937 to 759,224 _00695 Position (kb) 757 758 759Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 756.254 kb on + strand, within MIT1002_00692at 756.262 kb on - strand, within MIT1002_00692at 756.274 kb on + strand, within MIT1002_00692at 756.281 kb on + strand, within MIT1002_00692at 756.284 kb on + strand, within MIT1002_00692at 756.289 kb on - strand, within MIT1002_00692at 756.367 kb on + strand, within MIT1002_00692at 756.409 kb on + strand, within MIT1002_00692at 756.409 kb on + strand, within MIT1002_00692at 756.541 kb on + strandat 756.549 kb on - strandat 756.549 kb on - strandat 756.697 kb on + strand, within MIT1002_00693at 756.775 kb on - strand, within MIT1002_00693at 756.837 kb on + strand, within MIT1002_00693at 756.892 kb on - strand, within MIT1002_00693at 756.953 kb on - strand, within MIT1002_00693at 757.088 kb on + strand, within MIT1002_00693at 757.114 kb on + strand, within MIT1002_00693at 757.161 kb on + strandat 757.194 kb on + strandat 757.415 kb on + strand, within MIT1002_00694at 757.417 kb on + strand, within MIT1002_00694at 757.423 kb on + strand, within MIT1002_00694at 757.423 kb on - strand, within MIT1002_00694at 757.431 kb on - strand, within MIT1002_00694at 757.507 kb on + strand, within MIT1002_00694at 757.530 kb on + strand, within MIT1002_00694at 757.555 kb on + strand, within MIT1002_00694at 757.582 kb on - strand, within MIT1002_00694at 757.596 kb on + strand, within MIT1002_00694at 757.610 kb on - strand, within MIT1002_00694at 757.622 kb on - strand, within MIT1002_00694at 757.641 kb on - strand, within MIT1002_00694at 757.698 kb on - strand, within MIT1002_00694at 757.709 kb on + strand, within MIT1002_00694at 757.711 kb on + strand, within MIT1002_00694at 757.719 kb on - strand, within MIT1002_00694at 757.776 kb on + strand, within MIT1002_00694at 757.824 kb on - strand, within MIT1002_00694at 757.837 kb on + strand, within MIT1002_00694at 757.837 kb on + strand, within MIT1002_00694at 757.847 kb on + strand, within MIT1002_00694at 757.847 kb on + strand, within MIT1002_00694at 757.847 kb on + strand, within MIT1002_00694at 757.855 kb on - strand, within MIT1002_00694at 757.855 kb on - strand, within MIT1002_00694at 757.855 kb on - strand, within MIT1002_00694at 757.883 kb on + strand, within MIT1002_00694at 757.894 kb on + strand, within MIT1002_00694at 757.912 kb on - strand, within MIT1002_00694at 757.917 kb on - strand, within MIT1002_00694at 757.919 kb on - strand, within MIT1002_00694at 757.948 kb on - strand, within MIT1002_00694at 758.025 kb on - strand, within MIT1002_00694at 758.028 kb on + strand, within MIT1002_00694at 758.028 kb on + strand, within MIT1002_00694at 758.036 kb on - strand, within MIT1002_00694at 758.059 kb on + strand, within MIT1002_00694at 758.155 kb on + strand, within MIT1002_00694at 758.163 kb on - strand, within MIT1002_00694at 758.179 kb on + strand, within MIT1002_00694at 758.187 kb on - strand, within MIT1002_00694at 758.189 kb on + strand, within MIT1002_00694at 758.245 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.246 kb on + strand, within MIT1002_00694at 758.254 kb on - strand, within MIT1002_00694at 758.254 kb on - strand, within MIT1002_00694at 758.254 kb on - strand, within MIT1002_00694at 758.254 kb on - strand, within MIT1002_00694at 758.254 kb on - strand, within MIT1002_00694at 758.254 kb on - strand, within MIT1002_00694at 758.254 kb on - strand, within MIT1002_00694at 758.283 kb on + strand, within MIT1002_00694at 758.342 kb on + strand, within MIT1002_00694at 758.352 kb on + strand, within MIT1002_00694at 758.358 kb on - strand, within MIT1002_00694at 758.395 kb on - strand, within MIT1002_00694at 758.583 kb on + strandat 758.591 kb on - strandat 758.591 kb on - strandat 758.604 kb on + strandat 758.678 kb on + strandat 758.683 kb on + strandat 758.685 kb on + strandat 758.688 kb on + strandat 758.691 kb on - strandat 758.701 kb on - strandat 758.703 kb on - strandat 758.717 kb on + strandat 758.725 kb on - strandat 758.786 kb on - strandat 758.829 kb on + strandat 758.831 kb on + strandat 758.839 kb on - strandat 758.839 kb on - strandat 758.839 kb on - strandat 758.839 kb on - strandat 758.839 kb on - strandat 758.839 kb on - strandat 758.922 kb on + strandat 758.958 kb on + strandat 759.139 kb on - strand, within MIT1002_00695at 759.167 kb on - strand, within MIT1002_00695at 759.246 kb on + strandat 759.273 kb on - strandat 759.279 kb on - strandat 759.306 kb on - strandat 759.324 kb on + strandat 759.332 kb on - strandat 759.415 kb on + strandat 759.436 kb on + strandat 759.444 kb on - strandat 759.444 kb on - strandat 759.449 kb on - strandat 759.479 kb on - strandat 759.498 kb on + strandat 759.498 kb on + strandat 759.501 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
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756,254 + MIT1002_00692 0.58 +1.5
756,262 - MIT1002_00692 0.59 +0.1
756,274 + MIT1002_00692 0.61 -0.0
756,281 + MIT1002_00692 0.62 -1.0
756,284 + MIT1002_00692 0.62 +3.5
756,289 - MIT1002_00692 0.63 -1.3
756,367 + MIT1002_00692 0.74 +0.7
756,409 + MIT1002_00692 0.80 -2.3
756,409 + MIT1002_00692 0.80 +0.3
756,541 + -1.8
756,549 - -1.0
756,549 - -1.2
756,697 + MIT1002_00693 0.23 +1.2
756,775 - MIT1002_00693 0.35 -1.9
756,837 + MIT1002_00693 0.45 +0.2
756,892 - MIT1002_00693 0.53 +0.7
756,953 - MIT1002_00693 0.63 +2.0
757,088 + MIT1002_00693 0.84 -0.3
757,114 + MIT1002_00693 0.88 -0.1
757,161 + +1.9
757,194 + -0.3
757,415 + MIT1002_00694 0.13 -1.8
757,417 + MIT1002_00694 0.13 +0.3
757,423 + MIT1002_00694 0.13 +1.0
757,423 - MIT1002_00694 0.13 -0.4
757,431 - MIT1002_00694 0.14 +0.5
757,507 + MIT1002_00694 0.20 -0.6
757,530 + MIT1002_00694 0.21 +0.0
757,555 + MIT1002_00694 0.23 +0.3
757,582 - MIT1002_00694 0.25 -1.1
757,596 + MIT1002_00694 0.26 -0.4
757,610 - MIT1002_00694 0.27 +0.2
757,622 - MIT1002_00694 0.28 +0.6
757,641 - MIT1002_00694 0.30 -1.2
757,698 - MIT1002_00694 0.34 +0.0
757,709 + MIT1002_00694 0.35 -0.8
757,711 + MIT1002_00694 0.35 +1.8
757,719 - MIT1002_00694 0.36 +0.1
757,776 + MIT1002_00694 0.40 +1.2
757,824 - MIT1002_00694 0.43 -0.1
757,837 + MIT1002_00694 0.44 -0.1
757,837 + MIT1002_00694 0.44 +1.0
757,847 + MIT1002_00694 0.45 -2.9
757,847 + MIT1002_00694 0.45 -1.1
757,847 + MIT1002_00694 0.45 -2.3
757,855 - MIT1002_00694 0.46 -0.7
757,855 - MIT1002_00694 0.46 +1.1
757,855 - MIT1002_00694 0.46 -0.0
757,883 + MIT1002_00694 0.48 +0.1
757,894 + MIT1002_00694 0.49 +1.0
757,912 - MIT1002_00694 0.50 -1.9
757,917 - MIT1002_00694 0.50 +0.1
757,919 - MIT1002_00694 0.50 -0.6
757,948 - MIT1002_00694 0.53 -0.8
758,025 - MIT1002_00694 0.58 -0.8
758,028 + MIT1002_00694 0.59 -0.3
758,028 + MIT1002_00694 0.59 -0.4
758,036 - MIT1002_00694 0.59 +0.4
758,059 + MIT1002_00694 0.61 +1.6
758,155 + MIT1002_00694 0.68 -2.0
758,163 - MIT1002_00694 0.69 +0.1
758,179 + MIT1002_00694 0.70 +0.1
758,187 - MIT1002_00694 0.70 -0.5
758,189 + MIT1002_00694 0.71 +0.2
758,245 + MIT1002_00694 0.75 +0.3
758,246 + MIT1002_00694 0.75 -0.9
758,246 + MIT1002_00694 0.75 +1.6
758,246 + MIT1002_00694 0.75 +1.2
758,246 + MIT1002_00694 0.75 -0.4
758,246 + MIT1002_00694 0.75 -0.3
758,246 + MIT1002_00694 0.75 +0.9
758,246 + MIT1002_00694 0.75 -0.3
758,246 + MIT1002_00694 0.75 -1.4
758,246 + MIT1002_00694 0.75 -0.4
758,254 - MIT1002_00694 0.75 -1.0
758,254 - MIT1002_00694 0.75 -0.3
758,254 - MIT1002_00694 0.75 +0.1
758,254 - MIT1002_00694 0.75 -0.3
758,254 - MIT1002_00694 0.75 +0.4
758,254 - MIT1002_00694 0.75 +1.2
758,254 - MIT1002_00694 0.75 -1.5
758,283 + MIT1002_00694 0.78 -0.3
758,342 + MIT1002_00694 0.82 +0.5
758,352 + MIT1002_00694 0.83 +0.4
758,358 - MIT1002_00694 0.83 -0.2
758,395 - MIT1002_00694 0.86 -0.1
758,583 + -1.4
758,591 - -1.6
758,591 - -0.5
758,604 + +0.4
758,678 + +0.6
758,683 + +1.3
758,685 + -0.3
758,688 + -0.2
758,691 - +0.3
758,701 - +0.3
758,703 - -0.1
758,717 + -0.7
758,725 - -0.1
758,786 - +0.8
758,829 + +1.2
758,831 + +0.6
758,839 - +0.4
758,839 - -0.1
758,839 - +0.7
758,839 - -2.6
758,839 - -0.0
758,839 - -0.8
758,922 + +0.9
758,958 + -0.7
759,139 - MIT1002_00695 0.70 -0.5
759,167 - MIT1002_00695 0.80 -1.7
759,246 + -0.9
759,273 - +1.8
759,279 - -0.1
759,306 - +0.0
759,324 + -2.3
759,332 - -2.5
759,415 + -0.4
759,436 + -2.1
759,444 - -0.8
759,444 - +1.6
759,449 - -1.9
759,479 - -1.6
759,498 + +1.3
759,498 + -0.4
759,501 - -0.2

Or see this region's nucleotide sequence