Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00639

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00638 and MIT1002_00639 overlap by 4 nucleotidesMIT1002_00639 and MIT1002_00640 overlap by 11 nucleotides MIT1002_00638: MIT1002_00638 - Outer membrane protein OprM precursor, at 689,619 to 691,061 _00638 MIT1002_00639: MIT1002_00639 - putative efflux pump membrane fusion protein, at 691,058 to 692,536 _00639 MIT1002_00640: MIT1002_00640 - putative efflux pump membrane transporter TtgB, at 692,526 to 695,753 _00640 Position (kb) 691 692 693Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 690.232 kb on + strand, within MIT1002_00638at 690.290 kb on + strand, within MIT1002_00638at 690.333 kb on + strand, within MIT1002_00638at 690.360 kb on + strand, within MIT1002_00638at 690.408 kb on + strand, within MIT1002_00638at 690.414 kb on + strand, within MIT1002_00638at 690.414 kb on + strand, within MIT1002_00638at 690.414 kb on + strand, within MIT1002_00638at 690.500 kb on - strand, within MIT1002_00638at 690.609 kb on - strand, within MIT1002_00638at 690.625 kb on + strand, within MIT1002_00638at 690.635 kb on + strand, within MIT1002_00638at 690.635 kb on + strand, within MIT1002_00638at 690.642 kb on - strand, within MIT1002_00638at 690.716 kb on + strand, within MIT1002_00638at 690.759 kb on - strand, within MIT1002_00638at 690.832 kb on + strand, within MIT1002_00638at 690.860 kb on - strand, within MIT1002_00638at 690.963 kb on + strandat 690.963 kb on + strandat 690.985 kb on - strandat 690.995 kb on - strandat 691.000 kb on + strandat 691.032 kb on - strandat 691.036 kb on + strandat 691.036 kb on + strandat 691.042 kb on + strandat 691.050 kb on - strandat 691.050 kb on - strandat 691.052 kb on + strandat 691.071 kb on + strandat 691.132 kb on + strandat 691.268 kb on + strand, within MIT1002_00639at 691.268 kb on + strand, within MIT1002_00639at 691.276 kb on - strand, within MIT1002_00639at 691.289 kb on + strand, within MIT1002_00639at 691.356 kb on - strand, within MIT1002_00639at 691.430 kb on - strand, within MIT1002_00639at 691.437 kb on - strand, within MIT1002_00639at 691.491 kb on - strand, within MIT1002_00639at 691.491 kb on - strand, within MIT1002_00639at 691.491 kb on - strand, within MIT1002_00639at 691.491 kb on - strand, within MIT1002_00639at 691.560 kb on + strand, within MIT1002_00639at 691.560 kb on + strand, within MIT1002_00639at 691.560 kb on + strand, within MIT1002_00639at 691.594 kb on - strand, within MIT1002_00639at 691.604 kb on - strand, within MIT1002_00639at 691.619 kb on + strand, within MIT1002_00639at 691.661 kb on - strand, within MIT1002_00639at 691.680 kb on + strand, within MIT1002_00639at 691.687 kb on - strand, within MIT1002_00639at 691.688 kb on - strand, within MIT1002_00639at 691.688 kb on - strand, within MIT1002_00639at 691.695 kb on - strand, within MIT1002_00639at 691.733 kb on - strand, within MIT1002_00639at 691.740 kb on - strand, within MIT1002_00639at 691.750 kb on - strand, within MIT1002_00639at 691.760 kb on - strand, within MIT1002_00639at 691.769 kb on - strand, within MIT1002_00639at 691.830 kb on + strand, within MIT1002_00639at 691.835 kb on + strand, within MIT1002_00639at 691.907 kb on - strand, within MIT1002_00639at 691.942 kb on - strand, within MIT1002_00639at 691.948 kb on - strand, within MIT1002_00639at 691.960 kb on - strand, within MIT1002_00639at 691.960 kb on - strand, within MIT1002_00639at 691.976 kb on + strand, within MIT1002_00639at 692.077 kb on + strand, within MIT1002_00639at 692.085 kb on - strand, within MIT1002_00639at 692.165 kb on - strand, within MIT1002_00639at 692.239 kb on + strand, within MIT1002_00639at 692.267 kb on - strand, within MIT1002_00639at 692.309 kb on + strand, within MIT1002_00639at 692.309 kb on + strand, within MIT1002_00639at 692.317 kb on - strand, within MIT1002_00639at 692.409 kb on + strandat 692.409 kb on + strandat 692.417 kb on - strandat 692.446 kb on - strandat 692.466 kb on + strandat 692.478 kb on + strandat 692.494 kb on - strandat 692.504 kb on + strandat 692.516 kb on + strandat 692.625 kb on + strandat 692.630 kb on + strandat 692.630 kb on + strandat 692.630 kb on + strandat 692.632 kb on + strandat 692.638 kb on - strandat 692.638 kb on - strandat 692.662 kb on + strandat 692.670 kb on - strandat 692.670 kb on - strandat 692.670 kb on - strandat 692.670 kb on - strandat 692.768 kb on + strandat 692.853 kb on - strand, within MIT1002_00640at 692.902 kb on + strand, within MIT1002_00640at 692.910 kb on - strand, within MIT1002_00640at 692.910 kb on - strand, within MIT1002_00640at 692.979 kb on + strand, within MIT1002_00640at 693.010 kb on + strand, within MIT1002_00640at 693.023 kb on + strand, within MIT1002_00640at 693.023 kb on + strand, within MIT1002_00640at 693.279 kb on - strand, within MIT1002_00640at 693.280 kb on + strand, within MIT1002_00640at 693.288 kb on - strand, within MIT1002_00640at 693.288 kb on - strand, within MIT1002_00640at 693.290 kb on + strand, within MIT1002_00640at 693.290 kb on + strand, within MIT1002_00640at 693.290 kb on + strand, within MIT1002_00640at 693.298 kb on + strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.298 kb on - strand, within MIT1002_00640at 693.422 kb on - strand, within MIT1002_00640

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
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690,232 + MIT1002_00638 0.42 -0.9
690,290 + MIT1002_00638 0.47 -1.1
690,333 + MIT1002_00638 0.49 -0.6
690,360 + MIT1002_00638 0.51 +0.9
690,408 + MIT1002_00638 0.55 -0.3
690,414 + MIT1002_00638 0.55 -1.3
690,414 + MIT1002_00638 0.55 -1.3
690,414 + MIT1002_00638 0.55 -0.5
690,500 - MIT1002_00638 0.61 +0.5
690,609 - MIT1002_00638 0.69 +0.6
690,625 + MIT1002_00638 0.70 -2.0
690,635 + MIT1002_00638 0.70 +0.6
690,635 + MIT1002_00638 0.70 -0.2
690,642 - MIT1002_00638 0.71 -0.1
690,716 + MIT1002_00638 0.76 +0.6
690,759 - MIT1002_00638 0.79 -0.3
690,832 + MIT1002_00638 0.84 -1.2
690,860 - MIT1002_00638 0.86 +0.1
690,963 + +0.3
690,963 + +1.2
690,985 - +0.0
690,995 - +1.4
691,000 + -0.8
691,032 - +1.5
691,036 + -1.0
691,036 + -0.9
691,042 + +0.3
691,050 - +1.0
691,050 - -2.8
691,052 + -2.2
691,071 + -1.6
691,132 + +2.5
691,268 + MIT1002_00639 0.14 -2.0
691,268 + MIT1002_00639 0.14 -1.2
691,276 - MIT1002_00639 0.15 +1.1
691,289 + MIT1002_00639 0.16 -0.5
691,356 - MIT1002_00639 0.20 +1.0
691,430 - MIT1002_00639 0.25 +0.2
691,437 - MIT1002_00639 0.26 -2.2
691,491 - MIT1002_00639 0.29 +0.5
691,491 - MIT1002_00639 0.29 +0.2
691,491 - MIT1002_00639 0.29 -1.4
691,491 - MIT1002_00639 0.29 +2.5
691,560 + MIT1002_00639 0.34 +1.0
691,560 + MIT1002_00639 0.34 +0.6
691,560 + MIT1002_00639 0.34 +0.0
691,594 - MIT1002_00639 0.36 -0.0
691,604 - MIT1002_00639 0.37 +1.4
691,619 + MIT1002_00639 0.38 -0.4
691,661 - MIT1002_00639 0.41 +0.8
691,680 + MIT1002_00639 0.42 +0.2
691,687 - MIT1002_00639 0.43 +0.6
691,688 - MIT1002_00639 0.43 +0.7
691,688 - MIT1002_00639 0.43 -0.1
691,695 - MIT1002_00639 0.43 +0.3
691,733 - MIT1002_00639 0.46 +0.6
691,740 - MIT1002_00639 0.46 +0.5
691,750 - MIT1002_00639 0.47 +2.2
691,760 - MIT1002_00639 0.47 +1.3
691,769 - MIT1002_00639 0.48 -0.8
691,830 + MIT1002_00639 0.52 +0.4
691,835 + MIT1002_00639 0.53 -1.1
691,907 - MIT1002_00639 0.57 +0.0
691,942 - MIT1002_00639 0.60 +0.4
691,948 - MIT1002_00639 0.60 -2.9
691,960 - MIT1002_00639 0.61 +0.1
691,960 - MIT1002_00639 0.61 +1.0
691,976 + MIT1002_00639 0.62 +0.2
692,077 + MIT1002_00639 0.69 +0.2
692,085 - MIT1002_00639 0.69 +1.2
692,165 - MIT1002_00639 0.75 -0.1
692,239 + MIT1002_00639 0.80 -0.6
692,267 - MIT1002_00639 0.82 +0.3
692,309 + MIT1002_00639 0.85 +0.4
692,309 + MIT1002_00639 0.85 -0.4
692,317 - MIT1002_00639 0.85 +1.2
692,409 + -0.8
692,409 + +1.7
692,417 - -0.1
692,446 - -0.1
692,466 + +0.2
692,478 + +0.8
692,494 - +0.5
692,504 + +0.0
692,516 + -1.5
692,625 + -0.0
692,630 + +1.6
692,630 + +1.1
692,630 + +0.8
692,632 + -1.5
692,638 - +0.0
692,638 - +1.7
692,662 + -0.5
692,670 - -0.0
692,670 - -0.7
692,670 - +0.3
692,670 - -0.7
692,768 + +1.3
692,853 - MIT1002_00640 0.10 +0.2
692,902 + MIT1002_00640 0.12 +0.0
692,910 - MIT1002_00640 0.12 +2.7
692,910 - MIT1002_00640 0.12 +0.8
692,979 + MIT1002_00640 0.14 +0.3
693,010 + MIT1002_00640 0.15 +0.0
693,023 + MIT1002_00640 0.15 +1.3
693,023 + MIT1002_00640 0.15 -0.4
693,279 - MIT1002_00640 0.23 +0.4
693,280 + MIT1002_00640 0.23 -0.7
693,288 - MIT1002_00640 0.24 +0.3
693,288 - MIT1002_00640 0.24 -2.1
693,290 + MIT1002_00640 0.24 +1.2
693,290 + MIT1002_00640 0.24 +0.9
693,290 + MIT1002_00640 0.24 -1.5
693,298 + MIT1002_00640 0.24 +0.4
693,298 - MIT1002_00640 0.24 -0.0
693,298 - MIT1002_00640 0.24 +0.2
693,298 - MIT1002_00640 0.24 -0.6
693,298 - MIT1002_00640 0.24 -0.1
693,298 - MIT1002_00640 0.24 -0.4
693,422 - MIT1002_00640 0.28 +0.2

Or see this region's nucleotide sequence