Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00449 and MIT1002_00450 are separated by 2 nucleotides MIT1002_00450 and MIT1002_00451 overlap by 4 nucleotides MIT1002_00451 and MIT1002_00452 are separated by 2 nucleotides MIT1002_00452 and MIT1002_00453 overlap by 13 nucleotides
MIT1002_00449: MIT1002_00449 - Type IV pilus biogenesis and competence protein PilQ precursor, at 490,329 to 492,101
_00449
MIT1002_00450: MIT1002_00450 - Pilus assembly protein, PilP, at 492,104 to 492,631
_00450
MIT1002_00451: MIT1002_00451 - Pilus assembly protein, PilO, at 492,628 to 493,239
_00451
MIT1002_00452: MIT1002_00452 - Fimbrial assembly protein (PilN), at 493,242 to 493,820
_00452
MIT1002_00453: MIT1002_00453 - type IV pilus assembly protein PilM, at 493,808 to 494,875
_00453
Position (kb) 492
493
494 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 491.644 kb on - strand, within MIT1002_00449 at 491.654 kb on - strand, within MIT1002_00449 at 491.706 kb on + strand, within MIT1002_00449 at 491.714 kb on - strand, within MIT1002_00449 at 491.789 kb on + strand, within MIT1002_00449 at 491.858 kb on + strand, within MIT1002_00449 at 491.881 kb on + strand, within MIT1002_00449 at 491.881 kb on - strand, within MIT1002_00449 at 491.894 kb on - strand, within MIT1002_00449 at 491.921 kb on - strand, within MIT1002_00449 at 492.039 kb on - strand at 492.040 kb on + strand at 492.048 kb on - strand at 492.109 kb on - strand at 492.115 kb on - strand at 492.121 kb on + strand at 492.171 kb on + strand, within MIT1002_00450 at 492.171 kb on + strand, within MIT1002_00450 at 492.179 kb on - strand, within MIT1002_00450 at 492.291 kb on + strand, within MIT1002_00450 at 492.303 kb on + strand, within MIT1002_00450 at 492.304 kb on - strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.328 kb on + strand, within MIT1002_00450 at 492.336 kb on - strand, within MIT1002_00450 at 492.336 kb on - strand, within MIT1002_00450 at 492.336 kb on - strand, within MIT1002_00450 at 492.336 kb on - strand, within MIT1002_00450 at 492.371 kb on - strand, within MIT1002_00450 at 492.426 kb on + strand, within MIT1002_00450 at 492.484 kb on - strand, within MIT1002_00450 at 492.484 kb on - strand, within MIT1002_00450 at 492.535 kb on + strand, within MIT1002_00450 at 492.535 kb on + strand, within MIT1002_00450 at 492.535 kb on + strand, within MIT1002_00450 at 492.535 kb on + strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.543 kb on - strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.547 kb on + strand, within MIT1002_00450 at 492.554 kb on + strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.555 kb on - strand, within MIT1002_00450 at 492.562 kb on - strand, within MIT1002_00450 at 492.569 kb on + strand, within MIT1002_00450 at 492.610 kb on - strand at 492.649 kb on - strand at 492.649 kb on - strand at 492.715 kb on - strand, within MIT1002_00451 at 492.743 kb on - strand, within MIT1002_00451 at 492.748 kb on + strand, within MIT1002_00451 at 492.756 kb on - strand, within MIT1002_00451 at 492.756 kb on - strand, within MIT1002_00451 at 492.756 kb on - strand, within MIT1002_00451 at 492.756 kb on - strand, within MIT1002_00451 at 492.795 kb on - strand, within MIT1002_00451 at 492.816 kb on - strand, within MIT1002_00451 at 492.874 kb on + strand, within MIT1002_00451 at 492.875 kb on - strand, within MIT1002_00451 at 492.879 kb on + strand, within MIT1002_00451 at 492.879 kb on + strand, within MIT1002_00451 at 492.947 kb on + strand, within MIT1002_00451 at 492.957 kb on - strand, within MIT1002_00451 at 492.959 kb on + strand, within MIT1002_00451 at 493.019 kb on + strand, within MIT1002_00451 at 493.045 kb on + strand, within MIT1002_00451 at 493.109 kb on + strand, within MIT1002_00451 at 493.124 kb on + strand, within MIT1002_00451 at 493.126 kb on + strand, within MIT1002_00451 at 493.287 kb on - strand at 493.287 kb on - strand at 493.288 kb on - strand at 493.288 kb on - strand at 493.288 kb on - strand at 493.342 kb on + strand, within MIT1002_00452 at 493.479 kb on - strand, within MIT1002_00452 at 493.487 kb on - strand, within MIT1002_00452 at 493.517 kb on + strand, within MIT1002_00452 at 493.556 kb on - strand, within MIT1002_00452 at 493.574 kb on + strand, within MIT1002_00452 at 493.739 kb on + strand, within MIT1002_00452 at 493.766 kb on - strand at 493.830 kb on - strand at 493.846 kb on - strand at 493.854 kb on + strand at 493.904 kb on - strand at 493.935 kb on - strand, within MIT1002_00453 at 493.943 kb on + strand, within MIT1002_00453 at 494.160 kb on - strand, within MIT1002_00453 at 494.170 kb on - strand, within MIT1002_00453 at 494.206 kb on + strand, within MIT1002_00453 at 494.220 kb on - strand, within MIT1002_00453
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6 remove 491,644 - MIT1002_00449 0.74 -0.7 491,654 - MIT1002_00449 0.75 -0.1 491,706 + MIT1002_00449 0.78 +0.6 491,714 - MIT1002_00449 0.78 +1.0 491,789 + MIT1002_00449 0.82 -0.7 491,858 + MIT1002_00449 0.86 -1.6 491,881 + MIT1002_00449 0.88 -0.4 491,881 - MIT1002_00449 0.88 +0.9 491,894 - MIT1002_00449 0.88 -0.7 491,921 - MIT1002_00449 0.90 +0.2 492,039 - -0.2 492,040 + -0.6 492,048 - +0.9 492,109 - +1.2 492,115 - +1.2 492,121 + +0.1 492,171 + MIT1002_00450 0.13 +0.8 492,171 + MIT1002_00450 0.13 +1.9 492,179 - MIT1002_00450 0.14 -0.5 492,291 + MIT1002_00450 0.35 -0.2 492,303 + MIT1002_00450 0.38 -0.5 492,304 - MIT1002_00450 0.38 +0.9 492,328 + MIT1002_00450 0.42 +0.4 492,328 + MIT1002_00450 0.42 +0.1 492,328 + MIT1002_00450 0.42 +0.7 492,328 + MIT1002_00450 0.42 -0.8 492,328 + MIT1002_00450 0.42 -0.5 492,328 + MIT1002_00450 0.42 +0.2 492,328 + MIT1002_00450 0.42 -2.0 492,336 - MIT1002_00450 0.44 -0.3 492,336 - MIT1002_00450 0.44 +1.2 492,336 - MIT1002_00450 0.44 +1.0 492,336 - MIT1002_00450 0.44 -1.3 492,371 - MIT1002_00450 0.51 +0.0 492,426 + MIT1002_00450 0.61 +0.1 492,484 - MIT1002_00450 0.72 +1.2 492,484 - MIT1002_00450 0.72 -0.1 492,535 + MIT1002_00450 0.82 +0.9 492,535 + MIT1002_00450 0.82 +0.7 492,535 + MIT1002_00450 0.82 -0.3 492,535 + MIT1002_00450 0.82 -0.7 492,543 - MIT1002_00450 0.83 -2.5 492,543 - MIT1002_00450 0.83 -0.5 492,543 - MIT1002_00450 0.83 -0.8 492,543 - MIT1002_00450 0.83 -0.4 492,543 - MIT1002_00450 0.83 +1.3 492,543 - MIT1002_00450 0.83 -0.5 492,543 - MIT1002_00450 0.83 -0.4 492,543 - MIT1002_00450 0.83 -0.8 492,543 - MIT1002_00450 0.83 +1.3 492,543 - MIT1002_00450 0.83 +1.0 492,543 - MIT1002_00450 0.83 +0.1 492,543 - MIT1002_00450 0.83 -0.8 492,543 - MIT1002_00450 0.83 +0.5 492,543 - MIT1002_00450 0.83 +1.5 492,543 - MIT1002_00450 0.83 -1.0 492,543 - MIT1002_00450 0.83 -0.0 492,543 - MIT1002_00450 0.83 -1.3 492,543 - MIT1002_00450 0.83 +0.9 492,543 - MIT1002_00450 0.83 +0.5 492,547 + MIT1002_00450 0.84 +0.4 492,547 + MIT1002_00450 0.84 -3.6 492,547 + MIT1002_00450 0.84 +0.5 492,547 + MIT1002_00450 0.84 +0.9 492,547 + MIT1002_00450 0.84 +0.7 492,547 + MIT1002_00450 0.84 +0.0 492,547 + MIT1002_00450 0.84 +1.2 492,547 + MIT1002_00450 0.84 -1.0 492,547 + MIT1002_00450 0.84 +2.3 492,554 + MIT1002_00450 0.85 -0.1 492,555 - MIT1002_00450 0.85 +0.4 492,555 - MIT1002_00450 0.85 +0.1 492,555 - MIT1002_00450 0.85 +2.4 492,555 - MIT1002_00450 0.85 -0.8 492,555 - MIT1002_00450 0.85 -0.4 492,555 - MIT1002_00450 0.85 +2.9 492,555 - MIT1002_00450 0.85 -0.4 492,555 - MIT1002_00450 0.85 +0.2 492,555 - MIT1002_00450 0.85 +0.3 492,555 - MIT1002_00450 0.85 +1.2 492,555 - MIT1002_00450 0.85 -0.3 492,555 - MIT1002_00450 0.85 -1.3 492,555 - MIT1002_00450 0.85 +0.0 492,562 - MIT1002_00450 0.87 -0.3 492,569 + MIT1002_00450 0.88 +0.7 492,610 - -0.3 492,649 - -0.7 492,649 - +0.1 492,715 - MIT1002_00451 0.14 -0.1 492,743 - MIT1002_00451 0.19 +1.2 492,748 + MIT1002_00451 0.20 +0.2 492,756 - MIT1002_00451 0.21 -0.2 492,756 - MIT1002_00451 0.21 -0.9 492,756 - MIT1002_00451 0.21 -1.0 492,756 - MIT1002_00451 0.21 -1.8 492,795 - MIT1002_00451 0.27 +1.1 492,816 - MIT1002_00451 0.31 -0.4 492,874 + MIT1002_00451 0.40 -0.8 492,875 - MIT1002_00451 0.40 -1.2 492,879 + MIT1002_00451 0.41 -0.8 492,879 + MIT1002_00451 0.41 +0.2 492,947 + MIT1002_00451 0.52 -2.1 492,957 - MIT1002_00451 0.54 +0.2 492,959 + MIT1002_00451 0.54 -0.8 493,019 + MIT1002_00451 0.64 -1.8 493,045 + MIT1002_00451 0.68 +0.6 493,109 + MIT1002_00451 0.79 +0.1 493,124 + MIT1002_00451 0.81 -0.8 493,126 + MIT1002_00451 0.81 +0.3 493,287 - -0.5 493,287 - +0.6 493,288 - -1.1 493,288 - -0.5 493,288 - -0.1 493,342 + MIT1002_00452 0.17 +0.0 493,479 - MIT1002_00452 0.41 -0.6 493,487 - MIT1002_00452 0.42 +0.3 493,517 + MIT1002_00452 0.47 +0.2 493,556 - MIT1002_00452 0.54 +0.6 493,574 + MIT1002_00452 0.57 +0.5 493,739 + MIT1002_00452 0.86 +1.2 493,766 - -1.1 493,830 - -1.3 493,846 - +0.4 493,854 + +0.0 493,904 - -0.6 493,935 - MIT1002_00453 0.12 +0.7 493,943 + MIT1002_00453 0.13 -1.2 494,160 - MIT1002_00453 0.33 -2.3 494,170 - MIT1002_00453 0.34 -0.5 494,206 + MIT1002_00453 0.37 -1.2 494,220 - MIT1002_00453 0.39 +0.7
Or see this region's nucleotide sequence