Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00407

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00406 and MIT1002_00407 are separated by 194 nucleotidesMIT1002_00407 and MIT1002_00408 are separated by 76 nucleotides MIT1002_00406: MIT1002_00406 - ATP-dependent RNA helicase HrpB, at 435,660 to 438,302 _00406 MIT1002_00407: MIT1002_00407 - Nickel uptake substrate-specific transmembrane region, at 438,497 to 439,321 _00407 MIT1002_00408: MIT1002_00408 - Membrane-bound lytic murein transglycosylase B precursor, at 439,398 to 440,681 _00408 Position (kb) 438 439 440Strain fitness (log2 ratio) -2 -1 0 1 2at 437.514 kb on - strand, within MIT1002_00406at 437.515 kb on + strand, within MIT1002_00406at 437.547 kb on + strand, within MIT1002_00406at 437.550 kb on - strand, within MIT1002_00406at 437.557 kb on + strand, within MIT1002_00406at 437.563 kb on - strand, within MIT1002_00406at 437.565 kb on - strand, within MIT1002_00406at 437.566 kb on + strand, within MIT1002_00406at 437.703 kb on - strand, within MIT1002_00406at 437.731 kb on - strand, within MIT1002_00406at 437.739 kb on + strand, within MIT1002_00406at 437.792 kb on + strand, within MIT1002_00406at 437.849 kb on - strand, within MIT1002_00406at 437.861 kb on - strand, within MIT1002_00406at 437.988 kb on + strand, within MIT1002_00406at 437.997 kb on + strand, within MIT1002_00406at 437.997 kb on + strand, within MIT1002_00406at 438.031 kb on - strand, within MIT1002_00406at 438.079 kb on - strandat 438.090 kb on + strandat 438.090 kb on + strandat 438.137 kb on + strandat 438.146 kb on + strandat 438.154 kb on - strandat 438.196 kb on + strandat 438.235 kb on - strandat 438.299 kb on + strandat 438.321 kb on - strandat 438.428 kb on + strandat 438.466 kb on - strandat 438.483 kb on + strandat 438.622 kb on + strand, within MIT1002_00407at 438.640 kb on + strand, within MIT1002_00407at 438.653 kb on + strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.661 kb on - strand, within MIT1002_00407at 438.670 kb on + strand, within MIT1002_00407at 438.670 kb on + strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.678 kb on - strand, within MIT1002_00407at 438.699 kb on + strand, within MIT1002_00407at 438.736 kb on + strand, within MIT1002_00407at 438.737 kb on + strand, within MIT1002_00407at 438.903 kb on - strand, within MIT1002_00407at 438.932 kb on + strand, within MIT1002_00407at 438.940 kb on + strand, within MIT1002_00407at 438.965 kb on - strand, within MIT1002_00407at 439.047 kb on - strand, within MIT1002_00407at 439.102 kb on - strand, within MIT1002_00407at 439.174 kb on + strand, within MIT1002_00407at 439.324 kb on + strandat 439.325 kb on + strandat 439.332 kb on - strandat 439.366 kb on - strandat 439.534 kb on + strand, within MIT1002_00408at 439.534 kb on + strand, within MIT1002_00408at 439.534 kb on + strand, within MIT1002_00408at 439.534 kb on + strand, within MIT1002_00408at 439.534 kb on + strand, within MIT1002_00408at 439.542 kb on - strand, within MIT1002_00408at 439.542 kb on - strand, within MIT1002_00408at 439.542 kb on - strand, within MIT1002_00408at 439.544 kb on + strand, within MIT1002_00408at 439.544 kb on + strand, within MIT1002_00408at 439.664 kb on - strand, within MIT1002_00408at 439.695 kb on + strand, within MIT1002_00408at 439.737 kb on + strand, within MIT1002_00408at 439.796 kb on + strand, within MIT1002_00408at 439.796 kb on + strand, within MIT1002_00408at 439.796 kb on + strand, within MIT1002_00408at 439.840 kb on - strand, within MIT1002_00408at 440.021 kb on - strand, within MIT1002_00408at 440.031 kb on + strand, within MIT1002_00408at 440.035 kb on - strand, within MIT1002_00408at 440.061 kb on + strand, within MIT1002_00408at 440.069 kb on - strand, within MIT1002_00408at 440.113 kb on - strand, within MIT1002_00408at 440.125 kb on - strand, within MIT1002_00408at 440.180 kb on + strand, within MIT1002_00408

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
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437,514 - MIT1002_00406 0.70 +1.8
437,515 + MIT1002_00406 0.70 +0.5
437,547 + MIT1002_00406 0.71 -1.1
437,550 - MIT1002_00406 0.72 +0.9
437,557 + MIT1002_00406 0.72 +0.5
437,563 - MIT1002_00406 0.72 -1.0
437,565 - MIT1002_00406 0.72 -1.6
437,566 + MIT1002_00406 0.72 -1.2
437,703 - MIT1002_00406 0.77 +0.8
437,731 - MIT1002_00406 0.78 -0.6
437,739 + MIT1002_00406 0.79 +0.4
437,792 + MIT1002_00406 0.81 +0.5
437,849 - MIT1002_00406 0.83 -1.5
437,861 - MIT1002_00406 0.83 +0.6
437,988 + MIT1002_00406 0.88 +0.2
437,997 + MIT1002_00406 0.88 -0.8
437,997 + MIT1002_00406 0.88 -0.5
438,031 - MIT1002_00406 0.90 +1.6
438,079 - +0.6
438,090 + -2.3
438,090 + -0.2
438,137 + -0.4
438,146 + -1.6
438,154 - +0.0
438,196 + +0.4
438,235 - -0.7
438,299 + -0.9
438,321 - +0.1
438,428 + +0.6
438,466 - -0.4
438,483 + -1.0
438,622 + MIT1002_00407 0.15 +1.6
438,640 + MIT1002_00407 0.17 -2.3
438,653 + MIT1002_00407 0.19 +0.6
438,661 - MIT1002_00407 0.20 +0.5
438,661 - MIT1002_00407 0.20 -1.1
438,661 - MIT1002_00407 0.20 -2.4
438,670 + MIT1002_00407 0.21 +2.2
438,670 + MIT1002_00407 0.21 +1.2
438,678 - MIT1002_00407 0.22 -1.0
438,678 - MIT1002_00407 0.22 -0.7
438,678 - MIT1002_00407 0.22 -1.2
438,678 - MIT1002_00407 0.22 +1.8
438,678 - MIT1002_00407 0.22 +0.4
438,678 - MIT1002_00407 0.22 -1.9
438,699 + MIT1002_00407 0.24 -1.3
438,736 + MIT1002_00407 0.29 -1.1
438,737 + MIT1002_00407 0.29 +0.0
438,903 - MIT1002_00407 0.49 +0.8
438,932 + MIT1002_00407 0.53 +1.3
438,940 + MIT1002_00407 0.54 +0.4
438,965 - MIT1002_00407 0.57 -0.9
439,047 - MIT1002_00407 0.67 +0.7
439,102 - MIT1002_00407 0.73 +1.0
439,174 + MIT1002_00407 0.82 -1.2
439,324 + +0.9
439,325 + +0.4
439,332 - -1.9
439,366 - +2.0
439,534 + MIT1002_00408 0.11 -1.0
439,534 + MIT1002_00408 0.11 -0.3
439,534 + MIT1002_00408 0.11 +0.4
439,534 + MIT1002_00408 0.11 -0.0
439,534 + MIT1002_00408 0.11 -1.2
439,542 - MIT1002_00408 0.11 -1.2
439,542 - MIT1002_00408 0.11 -1.4
439,542 - MIT1002_00408 0.11 -1.2
439,544 + MIT1002_00408 0.11 -1.0
439,544 + MIT1002_00408 0.11 -0.0
439,664 - MIT1002_00408 0.21 +1.2
439,695 + MIT1002_00408 0.23 +0.7
439,737 + MIT1002_00408 0.26 -0.7
439,796 + MIT1002_00408 0.31 +2.0
439,796 + MIT1002_00408 0.31 -1.0
439,796 + MIT1002_00408 0.31 -0.3
439,840 - MIT1002_00408 0.34 -0.4
440,021 - MIT1002_00408 0.49 -0.7
440,031 + MIT1002_00408 0.49 -1.6
440,035 - MIT1002_00408 0.50 +0.5
440,061 + MIT1002_00408 0.52 -2.5
440,069 - MIT1002_00408 0.52 -0.4
440,113 - MIT1002_00408 0.56 -1.0
440,125 - MIT1002_00408 0.57 +1.5
440,180 + MIT1002_00408 0.61 -1.6

Or see this region's nucleotide sequence