Strain Fitness in Alteromonas macleodii MIT1002 around MIT1002_00401

Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMIT1002_00400 and MIT1002_00401 are separated by 408 nucleotidesMIT1002_00401 and MIT1002_00402 are separated by 253 nucleotidesMIT1002_00402 and MIT1002_00403 are separated by 148 nucleotides MIT1002_00400: MIT1002_00400 - hypothetical protein, at 427,775 to 429,685 _00400 MIT1002_00401: MIT1002_00401 - Peptidyl-dipeptidase dcp, at 430,094 to 432,283 _00401 MIT1002_00402: MIT1002_00402 - Bacterial inner membrane protein, at 432,537 to 433,055 _00402 MIT1002_00403: MIT1002_00403 - hypothetical protein, at 433,204 to 433,644 _00403 Position (kb) 430 431 432 433Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 429.137 kb on - strand, within MIT1002_00400at 429.205 kb on + strand, within MIT1002_00400at 429.213 kb on + strand, within MIT1002_00400at 429.221 kb on - strand, within MIT1002_00400at 429.221 kb on - strand, within MIT1002_00400at 429.243 kb on - strand, within MIT1002_00400at 429.416 kb on + strand, within MIT1002_00400at 429.424 kb on - strand, within MIT1002_00400at 429.480 kb on - strand, within MIT1002_00400at 429.489 kb on + strand, within MIT1002_00400at 429.496 kb on + strandat 429.496 kb on + strandat 429.504 kb on - strandat 429.510 kb on + strandat 429.510 kb on + strandat 429.513 kb on - strandat 429.532 kb on - strandat 429.727 kb on + strandat 429.768 kb on + strandat 429.776 kb on - strandat 429.776 kb on - strandat 429.776 kb on - strandat 429.776 kb on - strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.778 kb on + strandat 429.783 kb on + strandat 429.783 kb on + strandat 429.786 kb on - strandat 429.791 kb on - strandat 429.791 kb on - strandat 429.868 kb on - strandat 429.887 kb on - strandat 430.026 kb on + strandat 430.054 kb on - strandat 430.078 kb on + strandat 430.078 kb on + strandat 430.086 kb on - strandat 430.086 kb on - strandat 430.091 kb on + strandat 430.190 kb on - strandat 430.280 kb on + strandat 430.280 kb on + strandat 430.280 kb on + strandat 430.280 kb on + strandat 430.288 kb on - strandat 430.314 kb on - strand, within MIT1002_00401at 430.316 kb on + strand, within MIT1002_00401at 430.316 kb on + strand, within MIT1002_00401at 430.333 kb on - strand, within MIT1002_00401at 430.338 kb on + strand, within MIT1002_00401at 430.338 kb on + strand, within MIT1002_00401at 430.338 kb on + strand, within MIT1002_00401at 430.343 kb on + strand, within MIT1002_00401at 430.346 kb on - strand, within MIT1002_00401at 430.346 kb on - strand, within MIT1002_00401at 430.447 kb on + strand, within MIT1002_00401at 430.508 kb on - strand, within MIT1002_00401at 430.543 kb on - strand, within MIT1002_00401at 430.553 kb on - strand, within MIT1002_00401at 430.618 kb on + strand, within MIT1002_00401at 430.653 kb on + strand, within MIT1002_00401at 430.653 kb on + strand, within MIT1002_00401at 430.653 kb on + strand, within MIT1002_00401at 430.661 kb on - strand, within MIT1002_00401at 430.665 kb on + strand, within MIT1002_00401at 430.673 kb on + strand, within MIT1002_00401at 430.673 kb on - strand, within MIT1002_00401at 430.673 kb on - strand, within MIT1002_00401at 430.702 kb on - strand, within MIT1002_00401at 430.808 kb on + strand, within MIT1002_00401at 430.835 kb on + strand, within MIT1002_00401at 430.854 kb on + strand, within MIT1002_00401at 430.862 kb on - strand, within MIT1002_00401at 430.897 kb on - strand, within MIT1002_00401at 430.929 kb on - strand, within MIT1002_00401at 431.013 kb on + strand, within MIT1002_00401at 431.022 kb on - strand, within MIT1002_00401at 431.046 kb on + strand, within MIT1002_00401at 431.097 kb on - strand, within MIT1002_00401at 431.155 kb on + strand, within MIT1002_00401at 431.206 kb on - strand, within MIT1002_00401at 431.224 kb on - strand, within MIT1002_00401at 431.330 kb on + strand, within MIT1002_00401at 431.457 kb on - strand, within MIT1002_00401at 431.495 kb on - strand, within MIT1002_00401at 431.526 kb on + strand, within MIT1002_00401at 431.551 kb on - strand, within MIT1002_00401at 431.723 kb on - strand, within MIT1002_00401at 431.735 kb on + strand, within MIT1002_00401at 431.749 kb on + strand, within MIT1002_00401at 431.772 kb on - strand, within MIT1002_00401at 431.805 kb on + strand, within MIT1002_00401at 431.904 kb on - strand, within MIT1002_00401at 431.996 kb on + strand, within MIT1002_00401at 432.023 kb on + strand, within MIT1002_00401at 432.123 kb on + strandat 432.123 kb on + strandat 432.139 kb on - strandat 432.187 kb on + strandat 432.187 kb on - strandat 432.208 kb on - strandat 432.222 kb on + strandat 432.298 kb on + strandat 432.298 kb on + strandat 432.306 kb on - strandat 432.418 kb on - strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.447 kb on + strandat 432.455 kb on - strandat 432.455 kb on - strandat 432.455 kb on - strandat 432.455 kb on - strandat 432.500 kb on - strandat 432.500 kb on - strandat 432.519 kb on - strandat 432.605 kb on + strand, within MIT1002_00402at 432.654 kb on + strand, within MIT1002_00402at 432.679 kb on - strand, within MIT1002_00402at 432.680 kb on - strand, within MIT1002_00402at 432.705 kb on + strand, within MIT1002_00402at 432.710 kb on + strand, within MIT1002_00402at 432.876 kb on - strand, within MIT1002_00402at 432.905 kb on - strand, within MIT1002_00402at 432.905 kb on - strand, within MIT1002_00402at 432.906 kb on - strand, within MIT1002_00402at 432.906 kb on - strand, within MIT1002_00402at 432.971 kb on + strand, within MIT1002_00402at 433.022 kb on + strandat 433.088 kb on + strandat 433.101 kb on - strandat 433.103 kb on + strandat 433.133 kb on - strandat 433.170 kb on + strandat 433.212 kb on - strandat 433.241 kb on - strandat 433.251 kb on - strand, within MIT1002_00403

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Per-strain Table

Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
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429,137 - MIT1002_00400 0.71 +0.6
429,205 + MIT1002_00400 0.75 -2.5
429,213 + MIT1002_00400 0.75 +1.2
429,221 - MIT1002_00400 0.76 -0.3
429,221 - MIT1002_00400 0.76 +0.9
429,243 - MIT1002_00400 0.77 -0.4
429,416 + MIT1002_00400 0.86 +0.2
429,424 - MIT1002_00400 0.86 +0.1
429,480 - MIT1002_00400 0.89 +0.2
429,489 + MIT1002_00400 0.90 +0.3
429,496 + -0.3
429,496 + -0.9
429,504 - -1.2
429,510 + +3.2
429,510 + +1.2
429,513 - +0.6
429,532 - -1.5
429,727 + -1.8
429,768 + -0.9
429,776 - -0.1
429,776 - +0.7
429,776 - -2.0
429,776 - -0.0
429,778 + -1.9
429,778 + -0.5
429,778 + +0.6
429,778 + -0.6
429,778 + +0.4
429,778 + -0.0
429,783 + -0.2
429,783 + -1.3
429,786 - -0.3
429,791 - +0.1
429,791 - -1.1
429,868 - -0.7
429,887 - +0.2
430,026 + +1.9
430,054 - -0.5
430,078 + -0.9
430,078 + -0.5
430,086 - -0.5
430,086 - +2.4
430,091 + -0.8
430,190 - -2.9
430,280 + +0.9
430,280 + -1.2
430,280 + -0.9
430,280 + +2.1
430,288 - +0.2
430,314 - MIT1002_00401 0.10 -1.6
430,316 + MIT1002_00401 0.10 +0.3
430,316 + MIT1002_00401 0.10 -0.2
430,333 - MIT1002_00401 0.11 +0.5
430,338 + MIT1002_00401 0.11 +0.4
430,338 + MIT1002_00401 0.11 +0.5
430,338 + MIT1002_00401 0.11 +0.1
430,343 + MIT1002_00401 0.11 -0.2
430,346 - MIT1002_00401 0.12 +1.0
430,346 - MIT1002_00401 0.12 -0.1
430,447 + MIT1002_00401 0.16 -0.1
430,508 - MIT1002_00401 0.19 -0.0
430,543 - MIT1002_00401 0.21 +2.0
430,553 - MIT1002_00401 0.21 -1.3
430,618 + MIT1002_00401 0.24 -0.4
430,653 + MIT1002_00401 0.26 +0.4
430,653 + MIT1002_00401 0.26 +0.8
430,653 + MIT1002_00401 0.26 +0.3
430,661 - MIT1002_00401 0.26 -0.4
430,665 + MIT1002_00401 0.26 -0.4
430,673 + MIT1002_00401 0.26 -0.1
430,673 - MIT1002_00401 0.26 -1.1
430,673 - MIT1002_00401 0.26 +2.0
430,702 - MIT1002_00401 0.28 -0.5
430,808 + MIT1002_00401 0.33 -1.1
430,835 + MIT1002_00401 0.34 +1.2
430,854 + MIT1002_00401 0.35 +1.0
430,862 - MIT1002_00401 0.35 +1.6
430,897 - MIT1002_00401 0.37 +2.8
430,929 - MIT1002_00401 0.38 +0.9
431,013 + MIT1002_00401 0.42 +0.0
431,022 - MIT1002_00401 0.42 +1.2
431,046 + MIT1002_00401 0.43 +0.4
431,097 - MIT1002_00401 0.46 +0.6
431,155 + MIT1002_00401 0.48 +0.8
431,206 - MIT1002_00401 0.51 -1.8
431,224 - MIT1002_00401 0.52 +0.5
431,330 + MIT1002_00401 0.56 -1.4
431,457 - MIT1002_00401 0.62 +0.8
431,495 - MIT1002_00401 0.64 +0.1
431,526 + MIT1002_00401 0.65 -1.1
431,551 - MIT1002_00401 0.67 +0.1
431,723 - MIT1002_00401 0.74 +1.6
431,735 + MIT1002_00401 0.75 -1.0
431,749 + MIT1002_00401 0.76 +0.4
431,772 - MIT1002_00401 0.77 +0.0
431,805 + MIT1002_00401 0.78 +1.3
431,904 - MIT1002_00401 0.83 -0.1
431,996 + MIT1002_00401 0.87 -0.8
432,023 + MIT1002_00401 0.88 -1.7
432,123 + -0.7
432,123 + +0.1
432,139 - -1.2
432,187 + -0.5
432,187 - -0.5
432,208 - -2.4
432,222 + -2.7
432,298 + -0.6
432,298 + -0.5
432,306 - -0.2
432,418 - -0.3
432,447 + +2.9
432,447 + -0.3
432,447 + -0.2
432,447 + +0.3
432,447 + -0.9
432,447 + -0.7
432,455 - -0.7
432,455 - +1.0
432,455 - -1.1
432,455 - +1.5
432,500 - -0.7
432,500 - -1.5
432,519 - +0.8
432,605 + MIT1002_00402 0.13 +0.7
432,654 + MIT1002_00402 0.23 -0.4
432,679 - MIT1002_00402 0.27 +0.5
432,680 - MIT1002_00402 0.28 -0.8
432,705 + MIT1002_00402 0.32 +0.2
432,710 + MIT1002_00402 0.33 +0.1
432,876 - MIT1002_00402 0.65 +0.6
432,905 - MIT1002_00402 0.71 +3.8
432,905 - MIT1002_00402 0.71 +0.6
432,906 - MIT1002_00402 0.71 -0.7
432,906 - MIT1002_00402 0.71 +0.0
432,971 + MIT1002_00402 0.84 +1.4
433,022 + +0.2
433,088 + -0.5
433,101 - +2.2
433,103 + +1.3
433,133 - +0.3
433,170 + -0.6
433,212 - +1.2
433,241 - +0.4
433,251 - MIT1002_00403 0.11 +0.7

Or see this region's nucleotide sequence