Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00284 and MIT1002_00285 are separated by 9 nucleotides MIT1002_00285 and MIT1002_00286 are separated by 46 nucleotides MIT1002_00286 and MIT1002_00287 overlap by 11 nucleotides
MIT1002_00284: MIT1002_00284 - Copper-exporting P-type ATPase A, at 308,866 to 311,214
_00284
MIT1002_00285: MIT1002_00285 - hypothetical protein, at 311,224 to 311,580
_00285
MIT1002_00286: MIT1002_00286 - hypothetical protein, at 311,627 to 311,950
_00286
MIT1002_00287: MIT1002_00287 - Putative protein-S-isoprenylcysteine methyltransferase, at 311,940 to 312,593
_00287
Position (kb) 311
312 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 310.262 kb on - strand, within MIT1002_00284 at 310.371 kb on + strand, within MIT1002_00284 at 310.379 kb on - strand, within MIT1002_00284 at 310.384 kb on - strand, within MIT1002_00284 at 310.419 kb on + strand, within MIT1002_00284 at 310.427 kb on - strand, within MIT1002_00284 at 310.475 kb on + strand, within MIT1002_00284 at 310.477 kb on + strand, within MIT1002_00284 at 310.570 kb on + strand, within MIT1002_00284 at 310.577 kb on + strand, within MIT1002_00284 at 310.585 kb on - strand, within MIT1002_00284 at 310.606 kb on - strand, within MIT1002_00284 at 310.606 kb on - strand, within MIT1002_00284 at 310.670 kb on + strand, within MIT1002_00284 at 310.887 kb on - strand, within MIT1002_00284 at 310.894 kb on - strand, within MIT1002_00284 at 310.896 kb on + strand, within MIT1002_00284 at 310.914 kb on + strand, within MIT1002_00284 at 310.925 kb on + strand, within MIT1002_00284 at 310.973 kb on + strand, within MIT1002_00284 at 310.973 kb on + strand, within MIT1002_00284 at 310.973 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.975 kb on + strand, within MIT1002_00284 at 310.983 kb on - strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.009 kb on + strand at 311.012 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.017 kb on - strand at 311.027 kb on - strand at 311.113 kb on + strand at 311.115 kb on + strand at 311.115 kb on + strand at 311.123 kb on - strand at 311.123 kb on - strand at 311.177 kb on - strand at 311.177 kb on - strand at 311.249 kb on + strand at 311.249 kb on + strand at 311.257 kb on - strand at 311.257 kb on - strand at 311.324 kb on + strand, within MIT1002_00285 at 311.334 kb on - strand, within MIT1002_00285 at 311.356 kb on - strand, within MIT1002_00285 at 311.397 kb on + strand, within MIT1002_00285 at 311.405 kb on - strand, within MIT1002_00285 at 311.417 kb on + strand, within MIT1002_00285 at 311.417 kb on + strand, within MIT1002_00285 at 311.429 kb on + strand, within MIT1002_00285 at 311.476 kb on + strand, within MIT1002_00285 at 311.497 kb on - strand, within MIT1002_00285 at 311.507 kb on - strand, within MIT1002_00285 at 311.624 kb on + strand at 311.683 kb on - strand, within MIT1002_00286 at 311.698 kb on + strand, within MIT1002_00286 at 311.699 kb on + strand, within MIT1002_00286 at 311.748 kb on - strand, within MIT1002_00286 at 311.802 kb on - strand, within MIT1002_00286 at 311.830 kb on - strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.895 kb on + strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.903 kb on - strand, within MIT1002_00286 at 311.908 kb on - strand, within MIT1002_00286 at 311.908 kb on - strand, within MIT1002_00286 at 311.963 kb on - strand at 312.050 kb on - strand, within MIT1002_00287 at 312.054 kb on - strand, within MIT1002_00287 at 312.060 kb on - strand, within MIT1002_00287 at 312.149 kb on - strand, within MIT1002_00287 at 312.234 kb on + strand, within MIT1002_00287 at 312.242 kb on - strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.300 kb on + strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.308 kb on - strand, within MIT1002_00287 at 312.387 kb on - strand, within MIT1002_00287 at 312.415 kb on + strand, within MIT1002_00287 at 312.415 kb on + strand, within MIT1002_00287 at 312.423 kb on + strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.423 kb on - strand, within MIT1002_00287 at 312.494 kb on + strand, within MIT1002_00287
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6 remove 310,262 - MIT1002_00284 0.59 +1.0 310,371 + MIT1002_00284 0.64 -0.2 310,379 - MIT1002_00284 0.64 -1.9 310,384 - MIT1002_00284 0.65 -2.4 310,419 + MIT1002_00284 0.66 +1.1 310,427 - MIT1002_00284 0.66 -1.2 310,475 + MIT1002_00284 0.68 -0.4 310,477 + MIT1002_00284 0.69 +0.6 310,570 + MIT1002_00284 0.73 -0.8 310,577 + MIT1002_00284 0.73 +0.6 310,585 - MIT1002_00284 0.73 -0.2 310,606 - MIT1002_00284 0.74 +0.3 310,606 - MIT1002_00284 0.74 +1.6 310,670 + MIT1002_00284 0.77 -0.5 310,887 - MIT1002_00284 0.86 -0.1 310,894 - MIT1002_00284 0.86 +1.1 310,896 + MIT1002_00284 0.86 +0.8 310,914 + MIT1002_00284 0.87 -1.1 310,925 + MIT1002_00284 0.88 +0.6 310,973 + MIT1002_00284 0.90 -1.0 310,973 + MIT1002_00284 0.90 -1.4 310,973 + MIT1002_00284 0.90 -0.3 310,975 + MIT1002_00284 0.90 -0.7 310,975 + MIT1002_00284 0.90 -1.7 310,975 + MIT1002_00284 0.90 +0.1 310,975 + MIT1002_00284 0.90 -0.6 310,975 + MIT1002_00284 0.90 -2.8 310,983 - -0.4 311,009 + +0.0 311,009 + +0.0 311,009 + -0.0 311,009 + -0.9 311,009 + +1.2 311,009 + -0.4 311,012 - +0.3 311,017 - +0.6 311,017 - -0.4 311,017 - -0.2 311,017 - +0.7 311,017 - -0.7 311,017 - +1.1 311,027 - +0.1 311,113 + -0.3 311,115 + +0.2 311,115 + -0.3 311,123 - +0.5 311,123 - -0.2 311,177 - +0.2 311,177 - +2.1 311,249 + -0.7 311,249 + +1.1 311,257 - -0.4 311,257 - +0.7 311,324 + MIT1002_00285 0.28 +0.7 311,334 - MIT1002_00285 0.31 +0.3 311,356 - MIT1002_00285 0.37 +0.7 311,397 + MIT1002_00285 0.48 +0.9 311,405 - MIT1002_00285 0.51 +0.1 311,417 + MIT1002_00285 0.54 +0.5 311,417 + MIT1002_00285 0.54 -1.0 311,429 + MIT1002_00285 0.57 +0.8 311,476 + MIT1002_00285 0.71 +1.1 311,497 - MIT1002_00285 0.76 +0.0 311,507 - MIT1002_00285 0.79 +0.5 311,624 + -0.3 311,683 - MIT1002_00286 0.17 -1.3 311,698 + MIT1002_00286 0.22 +3.4 311,699 + MIT1002_00286 0.22 +0.1 311,748 - MIT1002_00286 0.37 +0.3 311,802 - MIT1002_00286 0.54 +0.0 311,830 - MIT1002_00286 0.63 -0.2 311,895 + MIT1002_00286 0.83 -1.9 311,895 + MIT1002_00286 0.83 +0.6 311,895 + MIT1002_00286 0.83 +0.6 311,895 + MIT1002_00286 0.83 +1.6 311,895 + MIT1002_00286 0.83 -0.4 311,895 + MIT1002_00286 0.83 -0.5 311,903 - MIT1002_00286 0.85 +0.2 311,903 - MIT1002_00286 0.85 +0.6 311,903 - MIT1002_00286 0.85 +0.2 311,903 - MIT1002_00286 0.85 -0.1 311,903 - MIT1002_00286 0.85 -1.6 311,903 - MIT1002_00286 0.85 +0.0 311,903 - MIT1002_00286 0.85 +0.1 311,908 - MIT1002_00286 0.87 -0.1 311,908 - MIT1002_00286 0.87 -1.0 311,963 - -0.7 312,050 - MIT1002_00287 0.17 -0.7 312,054 - MIT1002_00287 0.17 -0.6 312,060 - MIT1002_00287 0.18 +0.3 312,149 - MIT1002_00287 0.32 -0.9 312,234 + MIT1002_00287 0.45 +0.3 312,242 - MIT1002_00287 0.46 -2.0 312,300 + MIT1002_00287 0.55 +0.9 312,300 + MIT1002_00287 0.55 -1.5 312,300 + MIT1002_00287 0.55 -1.4 312,300 + MIT1002_00287 0.55 +0.1 312,300 + MIT1002_00287 0.55 -0.6 312,300 + MIT1002_00287 0.55 +0.4 312,300 + MIT1002_00287 0.55 -1.3 312,300 + MIT1002_00287 0.55 -0.5 312,300 + MIT1002_00287 0.55 +0.1 312,300 + MIT1002_00287 0.55 -1.2 312,300 + MIT1002_00287 0.55 +0.3 312,300 + MIT1002_00287 0.55 +0.6 312,300 + MIT1002_00287 0.55 -2.0 312,300 + MIT1002_00287 0.55 -0.5 312,300 + MIT1002_00287 0.55 -0.6 312,300 + MIT1002_00287 0.55 -2.3 312,300 + MIT1002_00287 0.55 -0.4 312,300 + MIT1002_00287 0.55 -0.2 312,300 + MIT1002_00287 0.55 -1.4 312,300 + MIT1002_00287 0.55 -0.6 312,300 + MIT1002_00287 0.55 -0.4 312,300 + MIT1002_00287 0.55 +2.3 312,300 + MIT1002_00287 0.55 -1.5 312,300 + MIT1002_00287 0.55 +0.2 312,300 + MIT1002_00287 0.55 -0.9 312,300 + MIT1002_00287 0.55 +0.2 312,300 + MIT1002_00287 0.55 -0.8 312,300 + MIT1002_00287 0.55 +1.2 312,300 + MIT1002_00287 0.55 -0.7 312,300 + MIT1002_00287 0.55 +0.2 312,300 + MIT1002_00287 0.55 -2.1 312,300 + MIT1002_00287 0.55 -1.1 312,300 + MIT1002_00287 0.55 -0.3 312,300 + MIT1002_00287 0.55 -1.4 312,300 + MIT1002_00287 0.55 +1.2 312,300 + MIT1002_00287 0.55 -1.3 312,300 + MIT1002_00287 0.55 -2.6 312,308 - MIT1002_00287 0.56 -0.4 312,308 - MIT1002_00287 0.56 +0.2 312,308 - MIT1002_00287 0.56 +0.3 312,308 - MIT1002_00287 0.56 -2.3 312,308 - MIT1002_00287 0.56 +0.3 312,308 - MIT1002_00287 0.56 -0.1 312,308 - MIT1002_00287 0.56 +1.1 312,308 - MIT1002_00287 0.56 +1.0 312,308 - MIT1002_00287 0.56 +1.3 312,308 - MIT1002_00287 0.56 -0.0 312,308 - MIT1002_00287 0.56 +0.2 312,308 - MIT1002_00287 0.56 -0.5 312,308 - MIT1002_00287 0.56 +0.6 312,308 - MIT1002_00287 0.56 +0.5 312,308 - MIT1002_00287 0.56 -1.3 312,308 - MIT1002_00287 0.56 +0.1 312,308 - MIT1002_00287 0.56 +0.4 312,308 - MIT1002_00287 0.56 -0.1 312,308 - MIT1002_00287 0.56 +0.5 312,308 - MIT1002_00287 0.56 +0.6 312,308 - MIT1002_00287 0.56 -2.2 312,308 - MIT1002_00287 0.56 +0.1 312,308 - MIT1002_00287 0.56 -1.9 312,308 - MIT1002_00287 0.56 -1.2 312,308 - MIT1002_00287 0.56 +0.4 312,308 - MIT1002_00287 0.56 -1.4 312,308 - MIT1002_00287 0.56 -1.2 312,308 - MIT1002_00287 0.56 -0.7 312,308 - MIT1002_00287 0.56 -0.3 312,387 - MIT1002_00287 0.68 +1.4 312,415 + MIT1002_00287 0.73 -0.4 312,415 + MIT1002_00287 0.73 +0.0 312,423 + MIT1002_00287 0.74 +1.2 312,423 - MIT1002_00287 0.74 +1.8 312,423 - MIT1002_00287 0.74 +0.6 312,423 - MIT1002_00287 0.74 -0.1 312,423 - MIT1002_00287 0.74 +0.6 312,494 + MIT1002_00287 0.85 -1.7
Or see this region's nucleotide sequence