Experiment: Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MIT1002_00120 and MIT1002_00121 are separated by 10 nucleotides MIT1002_00121 and MIT1002_00122 are separated by 89 nucleotides MIT1002_00122 and MIT1002_00123 are separated by 256 nucleotides MIT1002_00123 and MIT1002_00124 are separated by 235 nucleotides
MIT1002_00120: MIT1002_00120 - hypothetical protein, at 130,753 to 131,040
_00120
MIT1002_00121: MIT1002_00121 - hypothetical protein, at 131,051 to 131,251
_00121
MIT1002_00122: MIT1002_00122 - UvsW helicase, at 131,341 to 133,731
_00122
MIT1002_00123: MIT1002_00123 - hypothetical protein, at 133,988 to 134,191
_00123
MIT1002_00124: MIT1002_00124 - Outer membrane protein W precursor, at 134,427 to 135,098
_00124
Position (kb) 131
132
133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6
7
8 at 130.419 kb on - strand at 130.432 kb on - strand at 130.476 kb on + strand at 130.481 kb on + strand at 130.484 kb on - strand at 130.518 kb on + strand at 130.518 kb on + strand at 130.531 kb on + strand at 130.533 kb on + strand at 130.540 kb on + strand at 130.540 kb on + strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.548 kb on - strand at 130.598 kb on + strand at 130.600 kb on + strand at 130.608 kb on - strand at 130.639 kb on + strand at 130.707 kb on + strand at 130.712 kb on + strand at 130.737 kb on + strand at 130.745 kb on - strand at 130.749 kb on + strand at 130.749 kb on + strand at 130.757 kb on - strand at 130.767 kb on - strand at 130.800 kb on + strand, within MIT1002_00120 at 130.800 kb on + strand, within MIT1002_00120 at 130.805 kb on + strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.808 kb on - strand, within MIT1002_00120 at 130.818 kb on - strand, within MIT1002_00120 at 130.818 kb on - strand, within MIT1002_00120 at 130.823 kb on - strand, within MIT1002_00120 at 130.876 kb on - strand, within MIT1002_00120 at 130.878 kb on - strand, within MIT1002_00120 at 130.980 kb on + strand, within MIT1002_00120 at 130.987 kb on + strand, within MIT1002_00120 at 131.004 kb on + strand, within MIT1002_00120 at 131.013 kb on - strand at 131.036 kb on + strand at 131.049 kb on - strand at 131.080 kb on - strand, within MIT1002_00121 at 131.080 kb on - strand, within MIT1002_00121 at 131.114 kb on + strand, within MIT1002_00121 at 131.138 kb on + strand, within MIT1002_00121 at 131.143 kb on + strand, within MIT1002_00121 at 131.177 kb on + strand, within MIT1002_00121 at 131.240 kb on - strand at 131.241 kb on + strand at 131.306 kb on + strand at 131.307 kb on - strand at 131.307 kb on - strand at 131.332 kb on - strand at 131.399 kb on + strand at 131.404 kb on - strand at 131.442 kb on + strand at 131.466 kb on + strand at 131.584 kb on - strand, within MIT1002_00122 at 131.590 kb on + strand, within MIT1002_00122 at 131.590 kb on + strand, within MIT1002_00122 at 131.591 kb on + strand, within MIT1002_00122 at 131.593 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.598 kb on - strand, within MIT1002_00122 at 131.608 kb on - strand, within MIT1002_00122 at 131.644 kb on - strand, within MIT1002_00122 at 131.696 kb on + strand, within MIT1002_00122 at 131.696 kb on + strand, within MIT1002_00122 at 131.706 kb on + strand, within MIT1002_00122 at 131.729 kb on + strand, within MIT1002_00122 at 131.786 kb on - strand, within MIT1002_00122 at 131.811 kb on + strand, within MIT1002_00122 at 131.811 kb on + strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.819 kb on - strand, within MIT1002_00122 at 131.889 kb on + strand, within MIT1002_00122 at 131.889 kb on + strand, within MIT1002_00122 at 131.897 kb on - strand, within MIT1002_00122 at 131.897 kb on - strand, within MIT1002_00122 at 131.923 kb on + strand, within MIT1002_00122 at 131.972 kb on + strand, within MIT1002_00122 at 132.036 kb on - strand, within MIT1002_00122 at 132.217 kb on - strand, within MIT1002_00122 at 132.251 kb on + strand, within MIT1002_00122 at 132.254 kb on - strand, within MIT1002_00122 at 132.278 kb on + strand, within MIT1002_00122 at 132.288 kb on + strand, within MIT1002_00122 at 132.288 kb on + strand, within MIT1002_00122 at 132.311 kb on + strand, within MIT1002_00122 at 132.311 kb on + strand, within MIT1002_00122 at 132.319 kb on - strand, within MIT1002_00122 at 132.319 kb on - strand, within MIT1002_00122 at 132.342 kb on - strand, within MIT1002_00122 at 132.431 kb on + strand, within MIT1002_00122 at 132.478 kb on - strand, within MIT1002_00122 at 132.527 kb on + strand, within MIT1002_00122 at 132.527 kb on + strand, within MIT1002_00122 at 132.527 kb on + strand, within MIT1002_00122 at 132.527 kb on + strand, within MIT1002_00122 at 132.535 kb on - strand, within MIT1002_00122 at 132.535 kb on - strand, within MIT1002_00122 at 132.535 kb on - strand, within MIT1002_00122 at 132.535 kb on - strand, within MIT1002_00122 at 132.535 kb on - strand, within MIT1002_00122 at 132.550 kb on + strand, within MIT1002_00122 at 132.558 kb on - strand, within MIT1002_00122 at 132.558 kb on - strand, within MIT1002_00122 at 132.572 kb on + strand, within MIT1002_00122 at 132.580 kb on - strand, within MIT1002_00122 at 132.590 kb on - strand, within MIT1002_00122 at 132.729 kb on - strand, within MIT1002_00122 at 132.737 kb on + strand, within MIT1002_00122 at 132.745 kb on - strand, within MIT1002_00122 at 132.748 kb on - strand, within MIT1002_00122 at 132.748 kb on - strand, within MIT1002_00122 at 132.809 kb on - strand, within MIT1002_00122 at 132.888 kb on + strand, within MIT1002_00122 at 133.030 kb on - strand, within MIT1002_00122 at 133.037 kb on + strand, within MIT1002_00122 at 133.042 kb on + strand, within MIT1002_00122 at 133.050 kb on - strand, within MIT1002_00122 at 133.050 kb on - strand, within MIT1002_00122 at 133.050 kb on - strand, within MIT1002_00122 at 133.079 kb on - strand, within MIT1002_00122 at 133.095 kb on - strand, within MIT1002_00122 at 133.215 kb on + strand, within MIT1002_00122 at 133.269 kb on + strand, within MIT1002_00122 at 133.277 kb on - strand, within MIT1002_00122 at 133.386 kb on + strand, within MIT1002_00122 at 133.415 kb on + strand, within MIT1002_00122 at 133.430 kb on + strand, within MIT1002_00122 at 133.438 kb on - strand, within MIT1002_00122 at 133.491 kb on - strand, within MIT1002_00122 at 133.498 kb on - strand at 133.503 kb on - strand at 133.519 kb on + strand at 133.521 kb on - strand at 133.522 kb on + strand at 133.522 kb on + strand at 133.527 kb on - strand at 133.565 kb on + strand at 133.565 kb on + strand at 133.611 kb on + strand at 133.716 kb on - strand at 133.789 kb on - strand at 133.791 kb on + strand at 133.791 kb on + strand at 133.799 kb on - strand at 133.811 kb on + strand at 133.818 kb on - strand at 133.819 kb on - strand at 133.890 kb on - strand at 134.052 kb on - strand, within MIT1002_00123 at 134.052 kb on - strand, within MIT1002_00123 at 134.054 kb on + strand, within MIT1002_00123 at 134.054 kb on + strand, within MIT1002_00123 at 134.062 kb on + strand, within MIT1002_00123 at 134.062 kb on - strand, within MIT1002_00123 at 134.062 kb on - strand, within MIT1002_00123 at 134.069 kb on + strand, within MIT1002_00123 at 134.070 kb on - strand, within MIT1002_00123 at 134.111 kb on - strand, within MIT1002_00123 at 134.116 kb on - strand, within MIT1002_00123 at 134.116 kb on - strand, within MIT1002_00123 at 134.153 kb on - strand, within MIT1002_00123 at 134.180 kb on + strand at 134.188 kb on - strand at 134.233 kb on - strand at 134.304 kb on + strand at 134.370 kb on + strand at 134.387 kb on - strand at 134.387 kb on - strand at 134.389 kb on + strand at 134.389 kb on + strand at 134.397 kb on - strand at 134.397 kb on - strand at 134.456 kb on + strand at 134.490 kb on + strand at 134.507 kb on + strand, within MIT1002_00124 at 134.526 kb on + strand, within MIT1002_00124 at 134.587 kb on + strand, within MIT1002_00124 at 134.595 kb on - strand, within MIT1002_00124 at 134.691 kb on + strand, within MIT1002_00124 at 134.696 kb on + strand, within MIT1002_00124 at 134.702 kb on + strand, within MIT1002_00124 at 134.725 kb on - strand, within MIT1002_00124
Per-strain Table
Position Strand Gene LocusTag Fraction Mixed culture with Prochlorococcus marinus str. MED4; Experiment C, time point 6 remove 130,419 - -1.2 130,432 - +2.7 130,476 + +2.2 130,481 + -1.9 130,484 - -0.8 130,518 + -0.1 130,518 + -1.5 130,531 + -1.4 130,533 + -0.2 130,540 + -1.2 130,540 + -0.4 130,548 - -1.0 130,548 - +1.2 130,548 - +0.7 130,548 - +0.5 130,548 - +0.3 130,598 + -0.4 130,600 + +0.2 130,608 - +0.8 130,639 + -0.3 130,707 + +1.1 130,712 + -1.3 130,737 + +1.5 130,745 - +0.4 130,749 + -0.0 130,749 + +1.1 130,757 - +0.2 130,767 - -0.8 130,800 + MIT1002_00120 0.16 +0.9 130,800 + MIT1002_00120 0.16 +0.1 130,805 + MIT1002_00120 0.18 +1.4 130,808 - MIT1002_00120 0.19 +0.0 130,808 - MIT1002_00120 0.19 +1.2 130,808 - MIT1002_00120 0.19 -2.9 130,808 - MIT1002_00120 0.19 -1.1 130,808 - MIT1002_00120 0.19 -0.1 130,818 - MIT1002_00120 0.23 -0.4 130,818 - MIT1002_00120 0.23 +1.2 130,823 - MIT1002_00120 0.24 -0.8 130,876 - MIT1002_00120 0.43 -0.4 130,878 - MIT1002_00120 0.43 -0.0 130,980 + MIT1002_00120 0.79 -0.1 130,987 + MIT1002_00120 0.81 +0.8 131,004 + MIT1002_00120 0.87 +2.3 131,013 - -1.1 131,036 + +2.0 131,049 - +0.2 131,080 - MIT1002_00121 0.14 -1.5 131,080 - MIT1002_00121 0.14 +1.2 131,114 + MIT1002_00121 0.31 +1.8 131,138 + MIT1002_00121 0.43 +0.6 131,143 + MIT1002_00121 0.46 +1.6 131,177 + MIT1002_00121 0.63 +1.5 131,240 - -0.0 131,241 + -1.6 131,306 + -0.2 131,307 - -0.3 131,307 - +1.6 131,332 - -0.2 131,399 + +2.0 131,404 - +0.1 131,442 + +0.7 131,466 + +0.6 131,584 - MIT1002_00122 0.10 +0.5 131,590 + MIT1002_00122 0.10 +0.1 131,590 + MIT1002_00122 0.10 +0.2 131,591 + MIT1002_00122 0.10 -0.8 131,593 - MIT1002_00122 0.11 +0.8 131,598 - MIT1002_00122 0.11 -0.1 131,598 - MIT1002_00122 0.11 +0.2 131,598 - MIT1002_00122 0.11 -0.8 131,598 - MIT1002_00122 0.11 -0.2 131,598 - MIT1002_00122 0.11 -1.4 131,608 - MIT1002_00122 0.11 -2.2 131,644 - MIT1002_00122 0.13 -0.3 131,696 + MIT1002_00122 0.15 -0.7 131,696 + MIT1002_00122 0.15 -0.2 131,706 + MIT1002_00122 0.15 +0.7 131,729 + MIT1002_00122 0.16 -1.0 131,786 - MIT1002_00122 0.19 +1.4 131,811 + MIT1002_00122 0.20 -0.0 131,811 + MIT1002_00122 0.20 -0.8 131,819 - MIT1002_00122 0.20 +2.2 131,819 - MIT1002_00122 0.20 -0.4 131,819 - MIT1002_00122 0.20 -1.4 131,819 - MIT1002_00122 0.20 -0.9 131,889 + MIT1002_00122 0.23 +0.9 131,889 + MIT1002_00122 0.23 -0.1 131,897 - MIT1002_00122 0.23 -1.4 131,897 - MIT1002_00122 0.23 +1.2 131,923 + MIT1002_00122 0.24 -0.2 131,972 + MIT1002_00122 0.26 -1.0 132,036 - MIT1002_00122 0.29 +1.0 132,217 - MIT1002_00122 0.37 +0.7 132,251 + MIT1002_00122 0.38 +0.7 132,254 - MIT1002_00122 0.38 +1.3 132,278 + MIT1002_00122 0.39 -0.3 132,288 + MIT1002_00122 0.40 -0.1 132,288 + MIT1002_00122 0.40 -0.8 132,311 + MIT1002_00122 0.41 +0.8 132,311 + MIT1002_00122 0.41 +2.7 132,319 - MIT1002_00122 0.41 -1.7 132,319 - MIT1002_00122 0.41 +0.8 132,342 - MIT1002_00122 0.42 -0.9 132,431 + MIT1002_00122 0.46 -1.3 132,478 - MIT1002_00122 0.48 -0.9 132,527 + MIT1002_00122 0.50 +1.2 132,527 + MIT1002_00122 0.50 -0.7 132,527 + MIT1002_00122 0.50 -0.3 132,527 + MIT1002_00122 0.50 +0.6 132,535 - MIT1002_00122 0.50 -0.3 132,535 - MIT1002_00122 0.50 -0.6 132,535 - MIT1002_00122 0.50 -1.7 132,535 - MIT1002_00122 0.50 +2.2 132,535 - MIT1002_00122 0.50 -0.2 132,550 + MIT1002_00122 0.51 +1.9 132,558 - MIT1002_00122 0.51 -0.1 132,558 - MIT1002_00122 0.51 -0.1 132,572 + MIT1002_00122 0.51 -0.3 132,580 - MIT1002_00122 0.52 +0.2 132,590 - MIT1002_00122 0.52 -1.5 132,729 - MIT1002_00122 0.58 +0.6 132,737 + MIT1002_00122 0.58 -1.0 132,745 - MIT1002_00122 0.59 -0.4 132,748 - MIT1002_00122 0.59 -0.4 132,748 - MIT1002_00122 0.59 -0.1 132,809 - MIT1002_00122 0.61 +1.3 132,888 + MIT1002_00122 0.65 +0.9 133,030 - MIT1002_00122 0.71 -0.5 133,037 + MIT1002_00122 0.71 +1.1 133,042 + MIT1002_00122 0.71 -0.6 133,050 - MIT1002_00122 0.71 +2.3 133,050 - MIT1002_00122 0.71 -2.3 133,050 - MIT1002_00122 0.71 +1.7 133,079 - MIT1002_00122 0.73 +0.5 133,095 - MIT1002_00122 0.73 +0.8 133,215 + MIT1002_00122 0.78 -0.1 133,269 + MIT1002_00122 0.81 -2.3 133,277 - MIT1002_00122 0.81 -0.3 133,386 + MIT1002_00122 0.86 -1.0 133,415 + MIT1002_00122 0.87 +0.5 133,430 + MIT1002_00122 0.87 +0.4 133,438 - MIT1002_00122 0.88 -1.9 133,491 - MIT1002_00122 0.90 +0.9 133,498 - -0.1 133,503 - -1.3 133,519 + -0.1 133,521 - +1.9 133,522 + -2.3 133,522 + +1.5 133,527 - +0.8 133,565 + -1.7 133,565 + +0.2 133,611 + -1.0 133,716 - +0.6 133,789 - +0.2 133,791 + -0.9 133,791 + +1.7 133,799 - +0.9 133,811 + -0.3 133,818 - -1.6 133,819 - +0.7 133,890 - +1.4 134,052 - MIT1002_00123 0.31 +0.2 134,052 - MIT1002_00123 0.31 +0.6 134,054 + MIT1002_00123 0.32 +0.4 134,054 + MIT1002_00123 0.32 +0.6 134,062 + MIT1002_00123 0.36 -0.3 134,062 - MIT1002_00123 0.36 -0.3 134,062 - MIT1002_00123 0.36 -0.2 134,069 + MIT1002_00123 0.40 +0.3 134,070 - MIT1002_00123 0.40 +1.1 134,111 - MIT1002_00123 0.60 -3.5 134,116 - MIT1002_00123 0.63 -0.6 134,116 - MIT1002_00123 0.63 -2.0 134,153 - MIT1002_00123 0.81 -0.3 134,180 + +2.1 134,188 - -1.2 134,233 - -0.5 134,304 + -1.7 134,370 + -0.5 134,387 - -0.2 134,387 - +1.8 134,389 + -0.7 134,389 + -0.6 134,397 - +8.3 134,397 - +1.6 134,456 + +0.9 134,490 + +1.4 134,507 + MIT1002_00124 0.12 -0.5 134,526 + MIT1002_00124 0.15 -1.0 134,587 + MIT1002_00124 0.24 -0.5 134,595 - MIT1002_00124 0.25 +0.1 134,691 + MIT1002_00124 0.39 +0.4 134,696 + MIT1002_00124 0.40 +0.2 134,702 + MIT1002_00124 0.41 +0.6 134,725 - MIT1002_00124 0.44 +0.2
Or see this region's nucleotide sequence