Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS16435

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
3,618,474	-		LRK53_RS16425	0.74	+0.1
3,618,498	-		LRK53_RS16425	0.76	-2.2
3,618,517	-		LRK53_RS16425	0.78	+1.1
3,618,517	-		LRK53_RS16425	0.78	+1.7
3,618,601	+		LRK53_RS16425	0.85	+0.0
3,618,602	-		LRK53_RS16425	0.85	+0.0
3,618,602	-		LRK53_RS16425	0.85	-1.7
3,618,740	+				-0.7
3,618,740	+				-1.3
3,618,741	-				-0.6
3,618,741	-				-1.8
3,618,756	+				+0.7
3,618,756	+				-0.5
3,618,756	+				-0.4
3,618,756	+				-1.3
3,618,757	-				+0.4
3,618,757	-				-1.6
3,618,763	-				-0.4
3,618,848	+				-0.1
3,618,848	+				-0.9
3,618,848	+				-0.7
3,618,849	-				-1.2
3,618,882	+				+1.6
3,618,883	-				+0.0
3,618,897	+				+2.0
3,618,897	+				+0.4
3,618,898	-				-0.8
3,618,898	-				-0.7
3,618,964	+				-2.7
3,618,965	-				-1.2
3,618,992	+				-0.9
3,618,992	+				-2.3
3,618,992	+				-2.6
3,618,992	+				-0.4
3,618,992	+				-2.6
3,618,993	-				+0.4
3,618,993	-				-0.9
3,618,993	-				+1.6
3,618,993	-				+0.2
3,618,993	-				-0.4
3,618,995	+				-2.3
3,618,995	+				-1.1
3,619,158	-		LRK53_RS16430	0.51	+0.2
3,619,158	-		LRK53_RS16430	0.51	+0.5
3,619,301	+		LRK53_RS16430	0.87	+0.0
3,619,301	+		LRK53_RS16430	0.87	+0.2
3,619,301	+		LRK53_RS16430	0.87	-0.7
3,619,301	+		LRK53_RS16430	0.87	-0.4
3,619,302	-		LRK53_RS16430	0.88	-2.1
3,619,302	-		LRK53_RS16430	0.88	-2.7
3,619,302	-		LRK53_RS16430	0.88	-0.3
3,619,302	-		LRK53_RS16430	0.88	-2.4
3,619,387	+				-0.3
3,619,388	-				-1.2
3,619,420	+				-0.9
3,619,433	+				-0.0
3,619,434	-				-0.4
3,619,440	+				+0.2
3,619,441	-				-1.2
3,619,525	+		LRK53_RS16435	0.21	+0.2
3,619,525	+		LRK53_RS16435	0.21	-0.6
3,619,525	+		LRK53_RS16435	0.21	-1.0
3,619,525	+		LRK53_RS16435	0.21	-0.2
3,619,525	+		LRK53_RS16435	0.21	-0.3
3,619,525	+		LRK53_RS16435	0.21	-0.1
3,619,525	+		LRK53_RS16435	0.21	-1.9
3,619,525	+		LRK53_RS16435	0.21	-1.9
3,619,525	+		LRK53_RS16435	0.21	+0.1
3,619,525	+		LRK53_RS16435	0.21	+0.0
3,619,525	+		LRK53_RS16435	0.21	-0.4
3,619,526	-		LRK53_RS16435	0.21	-1.7
3,619,526	-		LRK53_RS16435	0.21	+0.0
3,619,526	-		LRK53_RS16435	0.21	-1.6
3,619,526	-		LRK53_RS16435	0.21	+1.2
3,619,526	-		LRK53_RS16435	0.21	-0.5
3,619,648	-		LRK53_RS16435	0.37	-1.5
3,619,648	-		LRK53_RS16435	0.37	-0.8
3,619,648	-		LRK53_RS16435	0.37	-1.7
3,619,648	-		LRK53_RS16435	0.37	-0.6
3,619,648	-		LRK53_RS16435	0.37	+0.0
3,619,648	-		LRK53_RS16435	0.37	+0.4
3,619,711	+		LRK53_RS16435	0.46	-1.5
3,619,733	-		LRK53_RS16435	0.49	-1.2
3,619,830	+		LRK53_RS16435	0.62	-1.8
3,619,830	+		LRK53_RS16435	0.62	-0.3
3,619,830	+		LRK53_RS16435	0.62	-1.2
3,619,830	+		LRK53_RS16435	0.62	+0.8
3,619,831	-		LRK53_RS16435	0.62	-0.9
3,619,831	-		LRK53_RS16435	0.62	-0.2
3,619,831	-		LRK53_RS16435	0.62	+0.3
3,619,831	-		LRK53_RS16435	0.62	-1.2
3,619,831	-		LRK53_RS16435	0.62	-2.7
3,619,831	-		LRK53_RS16435	0.62	-1.4
3,619,831	-		LRK53_RS16435	0.62	-1.6
3,619,832	+		LRK53_RS16435	0.62	-0.6
3,619,832	+		LRK53_RS16435	0.62	-0.3
3,619,833	-		LRK53_RS16435	0.62	-3.1
3,619,833	-		LRK53_RS16435	0.62	-0.4
3,619,833	-		LRK53_RS16435	0.62	-0.3
3,619,883	+		LRK53_RS16435	0.69	-0.9
3,619,960	+		LRK53_RS16435	0.79	+0.2
3,619,960	+		LRK53_RS16435	0.79	-0.0
3,619,961	-		LRK53_RS16435	0.79	-1.1
3,620,025	+		LRK53_RS16435	0.88	-0.0
3,620,026	-		LRK53_RS16435	0.88	+0.0
3,620,026	-		LRK53_RS16435	0.88	+0.4
3,620,026	-		LRK53_RS16435	0.88	-1.2
3,620,146	+				+0.1
3,620,146	+				+0.4
3,620,146	+				+1.9
3,620,146	+				+0.1
3,620,147	-				+0.6
3,620,147	-				-0.8
3,620,147	-				-0.7
3,620,147	-				-2.8
3,620,147	-				-0.6
3,620,364	+				-0.2
3,620,365	-				-1.5
3,620,365	-				-1.2
3,620,372	+				-1.0
3,620,372	+				-1.1
3,620,373	-				-1.4
3,620,373	-				-0.4
3,620,387	+				+0.7
3,620,387	+				-0.2
3,620,388	-				+1.8
3,620,388	-				+0.3
3,620,388	-				+1.1
3,620,474	+				+0.9
3,620,474	+				-1.2
3,620,474	+				-0.9
3,620,474	+				-1.0
3,620,474	+				-0.7
3,620,475	-				-0.2
3,620,475	-				-0.9
3,620,533	+				+0.8
3,620,534	-				-0.2
3,620,534	-				-1.9
3,620,832	+				+0.0
3,620,832	+				+0.7
3,620,832	+				-2.8
3,620,832	+				+0.7
3,620,833	-				-0.9
3,620,952	+		LRK53_RS16440	0.15	-1.3
3,620,952	+		LRK53_RS16440	0.15	+0.3
3,620,952	+		LRK53_RS16440	0.15	-2.2
3,620,952	+		LRK53_RS16440	0.15	+1.0
3,620,952	+		LRK53_RS16440	0.15	-0.4
3,620,952	+		LRK53_RS16440	0.15	+0.4
3,620,952	+		LRK53_RS16440	0.15	+0.7
3,620,952	+		LRK53_RS16440	0.15	+0.0
3,620,952	+		LRK53_RS16440	0.15	+0.4
3,620,952	+		LRK53_RS16440	0.15	+1.6
3,620,952	+		LRK53_RS16440	0.15	+0.2
3,620,952	+		LRK53_RS16440	0.15	+0.0
3,620,952	+		LRK53_RS16440	0.15	+1.3
3,620,952	+		LRK53_RS16440	0.15	+1.5
3,620,952	+		LRK53_RS16440	0.15	-1.8
3,620,952	+		LRK53_RS16440	0.15	-3.2
3,620,952	+		LRK53_RS16440	0.15	-2.4
3,620,952	+		LRK53_RS16440	0.15	-1.0
3,620,952	+		LRK53_RS16440	0.15	+1.1
3,620,952	+		LRK53_RS16440	0.15	-0.7
3,620,952	+		LRK53_RS16440	0.15	-2.1
3,620,952	+		LRK53_RS16440	0.15	+0.7
3,620,953	-		LRK53_RS16440	0.15	-1.3
3,620,953	-		LRK53_RS16440	0.15	-1.7
3,620,953	-		LRK53_RS16440	0.15	-2.4
3,620,953	-		LRK53_RS16440	0.15	-1.2
3,620,953	-		LRK53_RS16440	0.15	-1.0
3,620,953	-		LRK53_RS16440	0.15	-2.2
3,620,953	-		LRK53_RS16440	0.15	+0.4
3,620,953	-		LRK53_RS16440	0.15	-2.1
3,620,953	-		LRK53_RS16440	0.15	-2.0
3,620,953	-		LRK53_RS16440	0.15	-0.7
3,620,953	-		LRK53_RS16440	0.15	-2.8
3,620,953	-		LRK53_RS16440	0.15	-0.3
3,620,953	-		LRK53_RS16440	0.15	-0.8
3,620,953	-		LRK53_RS16440	0.15	-1.0
3,620,953	-		LRK53_RS16440	0.15	-0.9
3,620,953	-		LRK53_RS16440	0.15	-0.7
3,620,953	-		LRK53_RS16440	0.15	-0.5
3,620,953	-		LRK53_RS16440	0.15	+0.5
3,620,953	-		LRK53_RS16440	0.15	+1.0
3,620,953	-		LRK53_RS16440	0.15	-1.2
3,620,953	-		LRK53_RS16440	0.15	-0.2
3,620,953	-		LRK53_RS16440	0.15	+0.7
3,620,953	-		LRK53_RS16440	0.15	-1.6
3,620,953	-		LRK53_RS16440	0.15	+0.0
3,620,954	+		LRK53_RS16440	0.16	+0.1
3,620,954	+		LRK53_RS16440	0.16	-1.6
3,620,954	+		LRK53_RS16440	0.16	+0.0
3,620,954	+		LRK53_RS16440	0.16	-0.3
3,620,955	-		LRK53_RS16440	0.16	-0.2
3,620,955	-		LRK53_RS16440	0.16	-2.0
3,620,955	-		LRK53_RS16440	0.16	-1.4
3,620,955	-		LRK53_RS16440	0.16	-1.0
3,621,103	+		LRK53_RS16440	0.39	-0.7
3,621,103	+		LRK53_RS16440	0.39	+0.2
3,621,103	+		LRK53_RS16440	0.39	-0.3
3,621,103	+		LRK53_RS16440	0.39	-2.0
3,621,103	+		LRK53_RS16440	0.39	+0.7
3,621,103	+		LRK53_RS16440	0.39	-1.7
3,621,103	+		LRK53_RS16440	0.39	+0.2
3,621,104	-		LRK53_RS16440	0.39	-0.0
3,621,104	-		LRK53_RS16440	0.39	+0.4
3,621,104	-		LRK53_RS16440	0.39	-0.4