Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS13435

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
2,967,647	-		LRK53_RS13430	0.39	+1.6
2,967,647	-		LRK53_RS13430	0.39	+0.3
2,967,679	+		LRK53_RS13430	0.41	-0.6
2,967,679	+		LRK53_RS13430	0.41	+1.3
2,967,679	+		LRK53_RS13430	0.41	+0.2
2,967,679	+		LRK53_RS13430	0.41	-2.0
2,967,679	+		LRK53_RS13430	0.41	-3.0
2,967,680	-		LRK53_RS13430	0.41	-1.1
2,967,680	-		LRK53_RS13430	0.41	-1.3
2,967,680	-		LRK53_RS13430	0.41	-0.7
2,967,919	+		LRK53_RS13430	0.57	-2.2
2,967,919	+		LRK53_RS13430	0.57	-1.9
2,967,919	+		LRK53_RS13430	0.57	-0.1
2,967,919	+		LRK53_RS13430	0.57	-0.1
2,967,919	+		LRK53_RS13430	0.57	-0.9
2,967,919	+		LRK53_RS13430	0.57	+0.3
2,967,919	+		LRK53_RS13430	0.57	-1.4
2,967,919	+		LRK53_RS13430	0.57	-1.2
2,967,919	+		LRK53_RS13430	0.57	-0.7
2,967,919	+		LRK53_RS13430	0.57	-1.7
2,967,919	+		LRK53_RS13430	0.57	+0.4
2,967,919	+		LRK53_RS13430	0.57	-0.6
2,967,920	-		LRK53_RS13430	0.57	-2.1
2,967,920	-		LRK53_RS13430	0.57	-0.1
2,967,920	-		LRK53_RS13430	0.57	+0.1
2,967,920	-		LRK53_RS13430	0.57	+0.2
2,967,920	-		LRK53_RS13430	0.57	+1.9
2,967,920	-		LRK53_RS13430	0.57	+0.1
2,967,920	-		LRK53_RS13430	0.57	-0.2
2,967,920	-		LRK53_RS13430	0.57	-1.5
2,967,920	-		LRK53_RS13430	0.57	-1.2
2,967,920	-		LRK53_RS13430	0.57	-0.1
2,967,920	-		LRK53_RS13430	0.57	+0.2
2,967,920	-		LRK53_RS13430	0.57	-0.4
2,967,976	+		LRK53_RS13430	0.61	-0.3
2,967,976	+		LRK53_RS13430	0.61	-0.4
2,967,976	+		LRK53_RS13430	0.61	+0.6
2,967,976	+		LRK53_RS13430	0.61	-1.0
2,967,977	-		LRK53_RS13430	0.61	-1.7
2,967,977	-		LRK53_RS13430	0.61	-0.5
2,968,015	+		LRK53_RS13430	0.64	-0.5
2,968,015	+		LRK53_RS13430	0.64	-1.9
2,968,015	+		LRK53_RS13430	0.64	-0.6
2,968,015	+		LRK53_RS13430	0.64	+0.7
2,968,015	+		LRK53_RS13430	0.64	-1.2
2,968,015	+		LRK53_RS13430	0.64	-2.6
2,968,016	-		LRK53_RS13430	0.64	-1.5
2,968,016	-		LRK53_RS13430	0.64	+0.9
2,968,016	-		LRK53_RS13430	0.64	-0.2
2,968,033	+		LRK53_RS13430	0.65	+1.3
2,968,033	+		LRK53_RS13430	0.65	+0.3
2,968,034	-		LRK53_RS13430	0.65	+0.2
2,968,138	+		LRK53_RS13430	0.72	-0.5
2,968,275	+		LRK53_RS13430	0.82	+1.3
2,968,275	+		LRK53_RS13430	0.82	-0.5
2,968,499	-				-1.6
2,968,511	-				-1.6
2,968,540	+				-0.3
2,968,540	+				+0.7
2,968,540	+				-1.4
2,968,540	+				-1.9
2,968,540	+				+1.4
2,968,540	+				-0.1
2,968,540	+				-0.8
2,968,540	+				-0.1
2,968,540	+				-1.7
2,968,540	+				+0.8
2,968,541	-				-0.8
2,968,541	-				-1.6
2,968,541	-				-0.3
2,968,541	-				-1.2
2,968,541	-				-0.8
2,968,541	-				-0.5
2,968,544	+				-1.3
2,968,545	-				-1.0
2,968,786	+		LRK53_RS13435	0.30	-0.8
2,968,786	+		LRK53_RS13435	0.30	-0.2
2,968,786	+		LRK53_RS13435	0.30	-0.8
2,968,786	+		LRK53_RS13435	0.30	-0.7
2,968,786	+		LRK53_RS13435	0.30	-0.7
2,968,903	+		LRK53_RS13435	0.45	-2.3
2,969,011	+		LRK53_RS13435	0.59	-1.7
2,969,011	+		LRK53_RS13435	0.59	-0.9
2,969,011	+		LRK53_RS13435	0.59	-0.8
2,969,011	+		LRK53_RS13435	0.59	-0.7
2,969,011	+		LRK53_RS13435	0.59	-0.5
2,969,011	+		LRK53_RS13435	0.59	+1.3
2,969,011	+		LRK53_RS13435	0.59	-0.7
2,969,011	+		LRK53_RS13435	0.59	+0.2
2,969,011	+		LRK53_RS13435	0.59	-2.9
2,969,012	-		LRK53_RS13435	0.59	-0.0
2,969,012	-		LRK53_RS13435	0.59	-2.0
2,969,012	-		LRK53_RS13435	0.59	+0.3
2,969,012	-		LRK53_RS13435	0.59	+1.0
2,969,012	-		LRK53_RS13435	0.59	-1.6
2,969,012	-		LRK53_RS13435	0.59	+0.4
2,969,012	-		LRK53_RS13435	0.59	-2.2
2,969,012	-		LRK53_RS13435	0.59	-0.9
2,969,198	+		LRK53_RS13435	0.84	-0.5
2,969,199	-		LRK53_RS13435	0.84	-0.2
2,969,209	+		LRK53_RS13435	0.85	-1.2
2,969,209	+		LRK53_RS13435	0.85	-0.6
2,969,209	+		LRK53_RS13435	0.85	-1.5
2,969,210	-		LRK53_RS13435	0.86	+0.7
2,969,210	-		LRK53_RS13435	0.86	-0.1
2,969,210	-		LRK53_RS13435	0.86	-2.1
2,969,210	-		LRK53_RS13435	0.86	-1.9
2,969,210	-		LRK53_RS13435	0.86	-1.1
2,969,328	+				-1.7
2,969,328	+				-1.0
2,969,328	+				-1.9
2,969,328	+				-1.5
2,969,328	+				-0.4
2,969,328	+				-2.1
2,969,329	-				+0.9
2,969,329	-				-3.2
2,969,329	-				-0.3
2,969,487	+				+0.0
2,969,487	+				-0.9
2,969,487	+				+0.3
2,969,487	+				-1.7
2,969,487	+				-0.7
2,969,487	+				-1.0
2,969,487	+				-1.4
2,969,487	+				+0.6
2,969,487	+				-0.1
2,969,487	+				-1.5
2,969,487	+				-0.2
2,969,487	+				-2.1
2,969,487	+				+1.1
2,969,488	-				-1.1
2,969,488	-				-0.5
2,969,488	-				+0.3
2,969,488	-				-0.4
2,969,488	-				-1.7
2,969,488	-				-0.7
2,969,488	-				-1.4
2,969,488	-				-2.0
2,969,488	-				-1.5
2,969,488	-				+0.2
2,969,488	-				-1.3
2,969,488	-				-1.4
2,969,488	-				-1.2
2,969,488	-				-0.6
2,969,535	+		LRK53_RS13440	0.12	-0.5
2,969,535	+		LRK53_RS13440	0.12	-0.2
2,969,535	+		LRK53_RS13440	0.12	-1.3
2,969,535	+		LRK53_RS13440	0.12	-1.5
2,969,535	+		LRK53_RS13440	0.12	-0.9
2,969,535	+		LRK53_RS13440	0.12	-0.1
2,969,535	+		LRK53_RS13440	0.12	+0.8
2,969,535	+		LRK53_RS13440	0.12	+0.1
2,969,535	+		LRK53_RS13440	0.12	-2.4
2,969,535	+		LRK53_RS13440	0.12	-1.3
2,969,535	+		LRK53_RS13440	0.12	-0.4
2,969,535	+		LRK53_RS13440	0.12	-1.5
2,969,536	-		LRK53_RS13440	0.13	-0.1
2,969,536	-		LRK53_RS13440	0.13	-0.5
2,969,536	-		LRK53_RS13440	0.13	+0.1
2,969,536	-		LRK53_RS13440	0.13	+0.3
2,969,536	-		LRK53_RS13440	0.13	+0.3
2,969,536	-		LRK53_RS13440	0.13	-2.3
2,969,536	-		LRK53_RS13440	0.13	-1.9
2,969,597	+		LRK53_RS13440	0.20	-1.4
2,969,667	+		LRK53_RS13440	0.28	-1.8
2,969,667	+		LRK53_RS13440	0.28	-1.1
2,969,667	+		LRK53_RS13440	0.28	+0.3
2,969,667	+		LRK53_RS13440	0.28	-1.6
2,969,667	+		LRK53_RS13440	0.28	-0.3
2,969,667	+		LRK53_RS13440	0.28	-0.1
2,969,667	+		LRK53_RS13440	0.28	-1.1
2,969,667	+		LRK53_RS13440	0.28	+1.1
2,969,667	+		LRK53_RS13440	0.28	-0.1
2,969,667	+		LRK53_RS13440	0.28	-0.5
2,969,667	+		LRK53_RS13440	0.28	-2.2
2,969,667	+		LRK53_RS13440	0.28	-0.7
2,969,667	+		LRK53_RS13440	0.28	-1.0
2,969,667	+		LRK53_RS13440	0.28	-0.4
2,969,667	+		LRK53_RS13440	0.28	+0.2
2,969,668	-		LRK53_RS13440	0.28	-0.6
2,969,668	-		LRK53_RS13440	0.28	-1.5
2,969,668	-		LRK53_RS13440	0.28	+0.3
2,969,668	-		LRK53_RS13440	0.28	-3.6
2,969,668	-		LRK53_RS13440	0.28	-0.5
2,969,668	-		LRK53_RS13440	0.28	-1.8
2,969,668	-		LRK53_RS13440	0.28	-0.5
2,969,668	-		LRK53_RS13440	0.28	-1.2
2,969,820	+		LRK53_RS13440	0.46	-0.2
2,969,820	+		LRK53_RS13440	0.46	+0.6
2,969,820	+		LRK53_RS13440	0.46	+0.3
2,969,820	+		LRK53_RS13440	0.46	-0.2
2,969,820	+		LRK53_RS13440	0.46	-1.5
2,969,820	+		LRK53_RS13440	0.46	+0.0
2,969,820	+		LRK53_RS13440	0.46	+2.3
2,969,820	+		LRK53_RS13440	0.46	+1.3
2,969,820	+		LRK53_RS13440	0.46	-0.6
2,969,820	+		LRK53_RS13440	0.46	+0.5
2,969,820	+		LRK53_RS13440	0.46	-0.7
2,969,820	+		LRK53_RS13440	0.46	-0.1
2,969,820	+		LRK53_RS13440	0.46	-2.1
2,969,820	+		LRK53_RS13440	0.46	+0.6
2,969,820	+		LRK53_RS13440	0.46	-1.0
2,969,820	+		LRK53_RS13440	0.46	-2.0
2,969,820	+		LRK53_RS13440	0.46	-0.8
2,969,820	+		LRK53_RS13440	0.46	-1.3
2,969,820	+		LRK53_RS13440	0.46	-0.7
2,969,821	-		LRK53_RS13440	0.46	+0.8
2,969,821	-		LRK53_RS13440	0.46	+0.9
2,969,821	-		LRK53_RS13440	0.46	-0.4
2,969,821	-		LRK53_RS13440	0.46	+0.0
2,969,821	-		LRK53_RS13440	0.46	-1.7
2,969,821	-		LRK53_RS13440	0.46	-0.6
2,969,821	-		LRK53_RS13440	0.46	+0.5
2,969,821	-		LRK53_RS13440	0.46	-0.4
2,969,821	-		LRK53_RS13440	0.46	-0.4
2,969,821	-		LRK53_RS13440	0.46	-1.8
2,969,821	-		LRK53_RS13440	0.46	-0.9
2,969,821	-		LRK53_RS13440	0.46	-3.1
2,969,821	-		LRK53_RS13440	0.46	-1.3
2,969,821	-		LRK53_RS13440	0.46	-0.4
2,969,821	-		LRK53_RS13440	0.46	-1.1
2,969,821	-		LRK53_RS13440	0.46	-0.7
2,969,821	-		LRK53_RS13440	0.46	+0.1
2,969,821	-		LRK53_RS13440	0.46	+0.9
2,969,821	-		LRK53_RS13440	0.46	-0.9
2,969,927	+		LRK53_RS13440	0.59	-0.6
2,969,927	+		LRK53_RS13440	0.59	-1.9
2,969,927	+		LRK53_RS13440	0.59	+0.1
2,969,927	+		LRK53_RS13440	0.59	-2.2
2,969,927	+		LRK53_RS13440	0.59	-1.8
2,969,928	-		LRK53_RS13440	0.59	-3.1
2,969,928	-		LRK53_RS13440	0.59	-1.5
2,969,928	-		LRK53_RS13440	0.59	-1.3
2,969,928	-		LRK53_RS13440	0.59	-1.4
2,969,928	-		LRK53_RS13440	0.59	-3.3
2,969,928	-		LRK53_RS13440	0.59	-2.4
2,969,928	-		LRK53_RS13440	0.59	+2.2
2,969,928	-		LRK53_RS13440	0.59	-0.2
2,969,928	-		LRK53_RS13440	0.59	-1.6
2,969,991	+		LRK53_RS13440	0.66	+1.0
2,969,991	+		LRK53_RS13440	0.66	+1.6
2,969,992	-		LRK53_RS13440	0.66	-1.6
2,969,992	-		LRK53_RS13440	0.66	+1.6
2,969,992	-		LRK53_RS13440	0.66	-0.6
2,969,992	-		LRK53_RS13440	0.66	-1.0
2,970,159	+		LRK53_RS13440	0.86	-0.7
2,970,159	+		LRK53_RS13440	0.86	-0.5
2,970,160	-		LRK53_RS13440	0.86	-0.2
2,970,160	-		LRK53_RS13440	0.86	+0.7
2,970,160	-		LRK53_RS13440	0.86	-0.4
2,970,160	-		LRK53_RS13440	0.86	+1.5
2,970,160	-		LRK53_RS13440	0.86	-0.4
2,970,305	+				-1.1
2,970,305	+				-0.7
2,970,305	+				-1.5
2,970,305	+				+0.3
2,970,305	+				-1.5
2,970,305	+				-0.8
2,970,305	+				+0.6
2,970,305	+				-0.8
2,970,305	+				+0.3
2,970,305	+				+0.1
2,970,305	+				-0.9
2,970,305	+				-0.4
2,970,306	-				-0.5
2,970,306	-				-2.0
2,970,306	-				-0.6
2,970,306	-				-3.2
2,970,306	-				-1.2
2,970,306	-				-1.7
2,970,306	-				-2.1
2,970,306	-				-1.2
2,970,306	-				-0.9
2,970,306	-				-1.5
2,970,306	-				-0.6