Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS04675

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
1,088,891	+		LRK53_RS04665	0.82	-1.0
1,088,891	+		LRK53_RS04665	0.82	-1.0
1,088,891	+		LRK53_RS04665	0.82	-0.6
1,088,891	+		LRK53_RS04665	0.82	+0.6
1,088,892	-		LRK53_RS04665	0.82	+0.7
1,088,892	-		LRK53_RS04665	0.82	-2.3
1,088,892	-		LRK53_RS04665	0.82	+0.1
1,088,892	-		LRK53_RS04665	0.82	-1.4
1,088,892	-		LRK53_RS04665	0.82	-0.1
1,088,892	-		LRK53_RS04665	0.82	-0.8
1,088,892	-		LRK53_RS04665	0.82	+0.7
1,088,892	-		LRK53_RS04665	0.82	-0.3
1,088,892	-		LRK53_RS04665	0.82	-1.3
1,088,892	-		LRK53_RS04665	0.82	-1.6
1,089,113	+				-0.4
1,089,113	+				-0.2
1,089,113	+				+0.2
1,089,113	+				-1.0
1,089,113	+				-0.1
1,089,114	-				-0.3
1,089,114	-				+0.3
1,089,114	-				+0.2
1,089,114	-				-3.1
1,089,114	-				+1.9
1,089,114	-				-0.8
1,089,114	-				-2.0
1,089,185	+				-1.4
1,089,185	+				-2.5
1,089,185	+				-1.2
1,089,185	+				-2.3
1,089,185	+				-1.9
1,089,185	+				-0.7
1,089,185	+				-1.2
1,089,185	+				+0.6
1,089,185	+				-0.1
1,089,185	+				-0.6
1,089,185	+				-0.8
1,089,185	+				-1.0
1,089,185	+				+0.1
1,089,185	+				-3.2
1,089,186	-				-0.3
1,089,186	-				-0.4
1,089,186	-				-2.0
1,089,186	-				-2.3
1,089,186	-				-1.7
1,089,188	+				-0.7
1,089,188	+				-0.7
1,089,189	-				+1.6
1,089,189	-				-0.4
1,089,189	-				-1.0
1,089,189	-				+0.1
1,089,255	-				-1.5
1,089,255	-				-0.4
1,089,402	+				-0.4
1,089,402	+				-2.2
1,089,402	+				-3.8
1,089,403	-				-1.4
1,089,403	-				+0.6
1,089,403	-				-1.2
1,089,403	-				-0.9
1,089,403	-				+0.4
1,089,476	+		LRK53_RS04670	0.19	-2.8
1,089,476	+		LRK53_RS04670	0.19	-2.0
1,089,476	+		LRK53_RS04670	0.19	-2.5
1,089,477	-		LRK53_RS04670	0.19	-0.8
1,089,477	-		LRK53_RS04670	0.19	-0.4
1,089,477	-		LRK53_RS04670	0.19	-0.8
1,089,477	-		LRK53_RS04670	0.19	-2.3
1,089,477	-		LRK53_RS04670	0.19	-0.7
1,089,500	+		LRK53_RS04670	0.24	+0.5
1,089,500	+		LRK53_RS04670	0.24	-0.1
1,089,500	+		LRK53_RS04670	0.24	-0.1
1,089,501	-		LRK53_RS04670	0.24	+1.1
1,089,501	-		LRK53_RS04670	0.24	+2.9
1,089,501	-		LRK53_RS04670	0.24	-0.6
1,089,501	-		LRK53_RS04670	0.24	-1.6
1,089,503	+		LRK53_RS04670	0.24	-0.2
1,089,504	-		LRK53_RS04670	0.25	-1.7
1,089,530	-		LRK53_RS04670	0.30	-0.6
1,089,530	-		LRK53_RS04670	0.30	-0.1
1,089,530	-		LRK53_RS04670	0.30	+0.7
1,089,563	+		LRK53_RS04670	0.36	-1.4
1,089,563	+		LRK53_RS04670	0.36	+1.2
1,089,563	+		LRK53_RS04670	0.36	-1.4
1,089,563	+		LRK53_RS04670	0.36	+0.9
1,089,563	+		LRK53_RS04670	0.36	-0.3
1,089,564	-		LRK53_RS04670	0.36	+0.4
1,089,564	-		LRK53_RS04670	0.36	-1.3
1,089,564	-		LRK53_RS04670	0.36	-0.5
1,089,564	-		LRK53_RS04670	0.36	-0.3
1,089,564	-		LRK53_RS04670	0.36	-0.9
1,089,631	+		LRK53_RS04670	0.50	-0.4
1,089,631	+		LRK53_RS04670	0.50	+0.4
1,089,631	+		LRK53_RS04670	0.50	-0.4
1,089,631	+		LRK53_RS04670	0.50	-0.6
1,089,632	-		LRK53_RS04670	0.50	-2.2
1,089,632	-		LRK53_RS04670	0.50	+1.4
1,089,632	-		LRK53_RS04670	0.50	-1.9
1,089,677	+		LRK53_RS04670	0.59	+0.1
1,089,869	+				-2.7
1,089,869	+				+0.2
1,090,099	+		LRK53_RS04675	0.33	+0.1
1,090,100	-		LRK53_RS04675	0.33	-0.1
1,090,125	+		LRK53_RS04675	0.37	+0.3
1,090,125	+		LRK53_RS04675	0.37	-1.8
1,090,125	+		LRK53_RS04675	0.37	-0.0
1,090,125	+		LRK53_RS04675	0.37	+0.5
1,090,125	+		LRK53_RS04675	0.37	+2.1
1,090,125	+		LRK53_RS04675	0.37	-1.0
1,090,125	+		LRK53_RS04675	0.37	+0.2
1,090,125	+		LRK53_RS04675	0.37	+0.1
1,090,126	-		LRK53_RS04675	0.37	-0.6
1,090,126	-		LRK53_RS04675	0.37	+0.2
1,090,126	-		LRK53_RS04675	0.37	-1.1
1,090,126	-		LRK53_RS04675	0.37	-0.4
1,090,267	+		LRK53_RS04675	0.58	-0.8
1,090,267	+		LRK53_RS04675	0.58	-0.9
1,090,267	+		LRK53_RS04675	0.58	-3.5
1,090,267	+		LRK53_RS04675	0.58	-0.4
1,090,267	+		LRK53_RS04675	0.58	+2.1
1,090,267	+		LRK53_RS04675	0.58	-0.4
1,090,268	-		LRK53_RS04675	0.58	-2.4
1,090,268	-		LRK53_RS04675	0.58	-1.7
1,090,268	-		LRK53_RS04675	0.58	-1.1
1,090,268	-		LRK53_RS04675	0.58	+1.7
1,090,268	-		LRK53_RS04675	0.58	+0.3
1,090,268	-		LRK53_RS04675	0.58	+0.8
1,090,268	-		LRK53_RS04675	0.58	+0.3
1,090,268	-		LRK53_RS04675	0.58	-2.7
1,090,268	-		LRK53_RS04675	0.58	-0.6
1,090,268	-		LRK53_RS04675	0.58	+1.0
1,090,268	-		LRK53_RS04675	0.58	-1.1
1,090,315	+		LRK53_RS04675	0.65	+0.9
1,090,315	+		LRK53_RS04675	0.65	-0.3
1,090,316	-		LRK53_RS04675	0.65	-2.1
1,090,389	+		LRK53_RS04675	0.76	+0.1
1,090,389	+		LRK53_RS04675	0.76	-2.0
1,090,389	+		LRK53_RS04675	0.76	-0.4
1,090,390	-		LRK53_RS04675	0.77	-1.4
1,090,390	-		LRK53_RS04675	0.77	-0.1
1,090,390	-		LRK53_RS04675	0.77	-0.8
1,090,390	-		LRK53_RS04675	0.77	+0.2
1,090,507	+				-0.9
1,090,508	-				-1.5
1,090,644	-		LRK53_RS04680	0.24	-1.3
1,090,644	-		LRK53_RS04680	0.24	+0.9
1,090,644	-		LRK53_RS04680	0.24	-1.9
1,090,754	+		LRK53_RS04680	0.54	-1.8
1,090,754	+		LRK53_RS04680	0.54	+0.6
1,090,754	+		LRK53_RS04680	0.54	-0.8
1,090,754	+		LRK53_RS04680	0.54	+0.5
1,090,945	+				-0.6
1,090,945	+				+0.1
1,090,945	+				-0.8
1,090,945	+				-0.1
1,090,945	+				-0.1
1,090,945	+				+1.7
1,090,945	+				+1.1
1,090,945	+				-1.1
1,090,945	+				-0.6
1,090,946	-				-0.4
1,090,946	-				+1.3
1,090,946	-				-0.9
1,090,946	-				+0.2
1,090,946	-				-1.5
1,090,946	-				-1.0
1,090,946	-				-2.4
1,090,946	-				-0.1
1,090,946	-				-1.3
1,090,946	-				-0.1
1,090,946	-				-0.3
1,090,946	-				-0.7
1,090,955	+				-2.2
1,090,979	+				-0.6
1,090,979	+				-0.7
1,090,979	+				-0.9
1,090,979	+				-0.7
1,090,979	+				-1.2
1,090,979	+				-0.1
1,090,979	+				+0.7
1,090,979	+				+0.1
1,090,980	-				+0.7
1,090,980	-				-1.6
1,090,980	-				-1.3
1,090,980	-				-0.1
1,090,980	-				+1.7
1,091,016	+				-1.1
1,091,016	+				-0.6
1,091,016	+				-0.6
1,091,016	+				-0.6
1,091,016	+				-0.9
1,091,017	-				+1.4
1,091,017	-				-1.1
1,091,017	-				-1.2
1,091,017	-				-0.3
1,091,017	-				+0.2
1,091,017	-				-0.5
1,091,017	-				+0.1
1,091,017	-				-0.1
1,091,238	+		LRK53_RS04685	0.31	-0.3
1,091,239	-		LRK53_RS04685	0.31	-2.2
1,091,239	-		LRK53_RS04685	0.31	-0.7
1,091,239	-		LRK53_RS04685	0.31	+1.6
1,091,239	-		LRK53_RS04685	0.31	-0.1
1,091,466	+		LRK53_RS04685	0.62	-0.3
1,091,466	+		LRK53_RS04685	0.62	-0.8
1,091,466	+		LRK53_RS04685	0.62	-0.4
1,091,466	+		LRK53_RS04685	0.62	+0.3
1,091,466	+		LRK53_RS04685	0.62	+1.6
1,091,466	+		LRK53_RS04685	0.62	-0.2
1,091,466	+		LRK53_RS04685	0.62	-2.7
1,091,466	+		LRK53_RS04685	0.62	-0.4
1,091,467	-		LRK53_RS04685	0.63	-1.0
1,091,467	-		LRK53_RS04685	0.63	-0.8
1,091,467	-		LRK53_RS04685	0.63	+0.9
1,091,467	-		LRK53_RS04685	0.63	+0.6
1,091,467	-		LRK53_RS04685	0.63	+1.1
1,091,467	-		LRK53_RS04685	0.63	-0.3
1,091,467	-		LRK53_RS04685	0.63	+0.8
1,091,467	-		LRK53_RS04685	0.63	+0.1