Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt LRK53_RS00910 and LRK53_RS00915 overlap by 1 nucleotides LRK53_RS00915 and LRK53_RS00920 overlap by 4 nucleotides LRK53_RS00920 and LRK53_RS00925 overlap by 4 nucleotides LRK53_RS00925 and LRK53_RS00930 overlap by 4 nucleotides LRK53_RS00930 and LRK53_RS00935 overlap by 4 nucleotides
LRK53_RS00910: LRK53_RS00910 - monovalent cation/H+ antiporter subunit A, at 230,272 to 233,166
_RS00910
LRK53_RS00915: LRK53_RS00915 - Na+/H+ antiporter subunit C, at 233,166 to 233,507
_RS00915
LRK53_RS00920: LRK53_RS00920 - monovalent cation/H+ antiporter subunit D, at 233,504 to 235,099
_RS00920
LRK53_RS00925: LRK53_RS00925 - Na+/H+ antiporter subunit E, at 235,096 to 235,584
_RS00925
LRK53_RS00930: LRK53_RS00930 - K+/H+ antiporter subunit F, at 235,581 to 235,862
_RS00930
LRK53_RS00935: LRK53_RS00935 - monovalent cation/H(+) antiporter subunit G, at 235,859 to 236,212
_RS00935
Position (kb) 233
234
235
236 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 232.751 kb on + strand, within LRK53_RS00910 at 232.752 kb on - strand, within LRK53_RS00910 at 232.752 kb on - strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.852 kb on + strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 232.853 kb on - strand, within LRK53_RS00910 at 233.197 kb on + strand at 233.198 kb on - strand at 233.198 kb on - strand at 233.198 kb on - strand at 233.274 kb on + strand, within LRK53_RS00915 at 233.275 kb on - strand, within LRK53_RS00915 at 233.364 kb on + strand, within LRK53_RS00915 at 233.687 kb on + strand, within LRK53_RS00920 at 233.937 kb on - strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.990 kb on + strand, within LRK53_RS00920 at 233.991 kb on - strand, within LRK53_RS00920 at 233.991 kb on - strand, within LRK53_RS00920 at 233.991 kb on - strand, within LRK53_RS00920 at 234.209 kb on + strand, within LRK53_RS00920 at 234.209 kb on + strand, within LRK53_RS00920 at 234.209 kb on + strand, within LRK53_RS00920 at 234.209 kb on + strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.210 kb on - strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.269 kb on + strand, within LRK53_RS00920 at 234.270 kb on - strand, within LRK53_RS00920 at 234.270 kb on - strand, within LRK53_RS00920 at 234.270 kb on - strand, within LRK53_RS00920 at 234.509 kb on + strand, within LRK53_RS00920 at 234.509 kb on + strand, within LRK53_RS00920 at 234.510 kb on - strand, within LRK53_RS00920 at 234.510 kb on - strand, within LRK53_RS00920 at 234.510 kb on - strand, within LRK53_RS00920 at 234.510 kb on - strand, within LRK53_RS00920 at 234.510 kb on - strand, within LRK53_RS00920 at 234.614 kb on + strand, within LRK53_RS00920 at 234.615 kb on - strand, within LRK53_RS00920 at 234.615 kb on - strand, within LRK53_RS00920 at 234.615 kb on - strand, within LRK53_RS00920 at 234.615 kb on - strand, within LRK53_RS00920 at 234.654 kb on - strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.933 kb on + strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 234.934 kb on - strand, within LRK53_RS00920 at 235.058 kb on + strand at 235.058 kb on + strand at 235.058 kb on + strand at 235.058 kb on + strand at 235.059 kb on - strand at 235.059 kb on - strand at 235.267 kb on + strand, within LRK53_RS00925 at 235.268 kb on - strand, within LRK53_RS00925 at 235.408 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.468 kb on + strand, within LRK53_RS00925 at 235.469 kb on - strand, within LRK53_RS00925 at 235.469 kb on - strand, within LRK53_RS00925 at 235.469 kb on - strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.502 kb on + strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.503 kb on - strand, within LRK53_RS00925 at 235.553 kb on - strand at 235.713 kb on + strand, within LRK53_RS00930 at 235.713 kb on + strand, within LRK53_RS00930 at 235.713 kb on + strand, within LRK53_RS00930 at 235.713 kb on + strand, within LRK53_RS00930 at 235.713 kb on + strand, within LRK53_RS00930 at 235.714 kb on - strand, within LRK53_RS00930 at 235.714 kb on - strand, within LRK53_RS00930 at 235.714 kb on - strand, within LRK53_RS00930 at 235.770 kb on + strand, within LRK53_RS00930 at 235.770 kb on + strand, within LRK53_RS00930 at 235.770 kb on + strand, within LRK53_RS00930 at 235.771 kb on - strand, within LRK53_RS00930 at 235.771 kb on - strand, within LRK53_RS00930 at 235.771 kb on - strand, within LRK53_RS00930 at 235.771 kb on - strand, within LRK53_RS00930 at 235.909 kb on - strand, within LRK53_RS00935 at 235.917 kb on + strand, within LRK53_RS00935 at 235.917 kb on + strand, within LRK53_RS00935 at 235.917 kb on + strand, within LRK53_RS00935 at 235.918 kb on - strand, within LRK53_RS00935 at 235.918 kb on - strand, within LRK53_RS00935 at 235.976 kb on + strand, within LRK53_RS00935 at 235.976 kb on + strand, within LRK53_RS00935 at 235.977 kb on - strand, within LRK53_RS00935 at 236.082 kb on - strand, within LRK53_RS00935 at 236.082 kb on - strand, within LRK53_RS00935
Per-strain Table
Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM remove 232,751 + LRK53_RS00910 0.86 +0.8 232,752 - LRK53_RS00910 0.86 +1.1 232,752 - LRK53_RS00910 0.86 -0.4 232,852 + LRK53_RS00910 0.89 -0.4 232,852 + LRK53_RS00910 0.89 -0.5 232,852 + LRK53_RS00910 0.89 -0.8 232,852 + LRK53_RS00910 0.89 -2.4 232,852 + LRK53_RS00910 0.89 +0.3 232,852 + LRK53_RS00910 0.89 -0.3 232,852 + LRK53_RS00910 0.89 -3.1 232,852 + LRK53_RS00910 0.89 +0.6 232,853 - LRK53_RS00910 0.89 +0.3 232,853 - LRK53_RS00910 0.89 -1.0 232,853 - LRK53_RS00910 0.89 -0.4 232,853 - LRK53_RS00910 0.89 -0.1 232,853 - LRK53_RS00910 0.89 -0.2 232,853 - LRK53_RS00910 0.89 -0.1 232,853 - LRK53_RS00910 0.89 -1.0 232,853 - LRK53_RS00910 0.89 -1.3 232,853 - LRK53_RS00910 0.89 -0.5 233,197 + -0.4 233,198 - -1.3 233,198 - +0.8 233,198 - -0.5 233,274 + LRK53_RS00915 0.32 +0.8 233,275 - LRK53_RS00915 0.32 -1.4 233,364 + LRK53_RS00915 0.58 -1.8 233,687 + LRK53_RS00920 0.11 -0.4 233,937 - LRK53_RS00920 0.27 -1.8 233,990 + LRK53_RS00920 0.30 -0.2 233,990 + LRK53_RS00920 0.30 -0.8 233,990 + LRK53_RS00920 0.30 -1.8 233,990 + LRK53_RS00920 0.30 -0.1 233,990 + LRK53_RS00920 0.30 -0.6 233,990 + LRK53_RS00920 0.30 -0.9 233,990 + LRK53_RS00920 0.30 -1.7 233,990 + LRK53_RS00920 0.30 -0.2 233,991 - LRK53_RS00920 0.31 +0.8 233,991 - LRK53_RS00920 0.31 -0.2 233,991 - LRK53_RS00920 0.31 -1.6 234,209 + LRK53_RS00920 0.44 +1.2 234,209 + LRK53_RS00920 0.44 -0.9 234,209 + LRK53_RS00920 0.44 +0.2 234,209 + LRK53_RS00920 0.44 -0.8 234,210 - LRK53_RS00920 0.44 -1.7 234,210 - LRK53_RS00920 0.44 -1.3 234,210 - LRK53_RS00920 0.44 -1.0 234,210 - LRK53_RS00920 0.44 +0.0 234,210 - LRK53_RS00920 0.44 -1.0 234,210 - LRK53_RS00920 0.44 -0.6 234,269 + LRK53_RS00920 0.48 +0.3 234,269 + LRK53_RS00920 0.48 -0.7 234,269 + LRK53_RS00920 0.48 +2.2 234,269 + LRK53_RS00920 0.48 +0.3 234,269 + LRK53_RS00920 0.48 +2.2 234,269 + LRK53_RS00920 0.48 -1.8 234,269 + LRK53_RS00920 0.48 +0.3 234,270 - LRK53_RS00920 0.48 -0.2 234,270 - LRK53_RS00920 0.48 -0.1 234,270 - LRK53_RS00920 0.48 +0.3 234,509 + LRK53_RS00920 0.63 -0.7 234,509 + LRK53_RS00920 0.63 -0.7 234,510 - LRK53_RS00920 0.63 -1.1 234,510 - LRK53_RS00920 0.63 +0.9 234,510 - LRK53_RS00920 0.63 -1.0 234,510 - LRK53_RS00920 0.63 -2.2 234,510 - LRK53_RS00920 0.63 -2.1 234,614 + LRK53_RS00920 0.70 +2.1 234,615 - LRK53_RS00920 0.70 -0.2 234,615 - LRK53_RS00920 0.70 -0.6 234,615 - LRK53_RS00920 0.70 +1.3 234,615 - LRK53_RS00920 0.70 -2.8 234,654 - LRK53_RS00920 0.72 +1.2 234,933 + LRK53_RS00920 0.90 -1.3 234,933 + LRK53_RS00920 0.90 -2.1 234,933 + LRK53_RS00920 0.90 -1.2 234,933 + LRK53_RS00920 0.90 -0.4 234,933 + LRK53_RS00920 0.90 -0.1 234,933 + LRK53_RS00920 0.90 -1.2 234,933 + LRK53_RS00920 0.90 -0.2 234,934 - LRK53_RS00920 0.90 -0.3 234,934 - LRK53_RS00920 0.90 +0.8 234,934 - LRK53_RS00920 0.90 +0.5 234,934 - LRK53_RS00920 0.90 -1.9 234,934 - LRK53_RS00920 0.90 +1.7 235,058 + +1.3 235,058 + +0.3 235,058 + -0.6 235,058 + -0.4 235,059 - -0.8 235,059 - -2.0 235,267 + LRK53_RS00925 0.35 +1.6 235,268 - LRK53_RS00925 0.35 +0.3 235,408 + LRK53_RS00925 0.64 -2.8 235,468 + LRK53_RS00925 0.76 -1.3 235,468 + LRK53_RS00925 0.76 -1.4 235,468 + LRK53_RS00925 0.76 -0.6 235,469 - LRK53_RS00925 0.76 -0.5 235,469 - LRK53_RS00925 0.76 +1.4 235,469 - LRK53_RS00925 0.76 +0.1 235,502 + LRK53_RS00925 0.83 +1.4 235,502 + LRK53_RS00925 0.83 -0.9 235,502 + LRK53_RS00925 0.83 -2.3 235,502 + LRK53_RS00925 0.83 +0.9 235,502 + LRK53_RS00925 0.83 -1.5 235,502 + LRK53_RS00925 0.83 +0.1 235,502 + LRK53_RS00925 0.83 -0.2 235,503 - LRK53_RS00925 0.83 -0.5 235,503 - LRK53_RS00925 0.83 +1.4 235,503 - LRK53_RS00925 0.83 -1.3 235,503 - LRK53_RS00925 0.83 -0.1 235,503 - LRK53_RS00925 0.83 -0.7 235,503 - LRK53_RS00925 0.83 -1.8 235,503 - LRK53_RS00925 0.83 -1.0 235,503 - LRK53_RS00925 0.83 -0.2 235,503 - LRK53_RS00925 0.83 +1.8 235,503 - LRK53_RS00925 0.83 -0.1 235,503 - LRK53_RS00925 0.83 +0.8 235,503 - LRK53_RS00925 0.83 -0.4 235,503 - LRK53_RS00925 0.83 +1.4 235,553 - -1.0 235,713 + LRK53_RS00930 0.47 +0.3 235,713 + LRK53_RS00930 0.47 -1.2 235,713 + LRK53_RS00930 0.47 -0.3 235,713 + LRK53_RS00930 0.47 -0.2 235,713 + LRK53_RS00930 0.47 -0.6 235,714 - LRK53_RS00930 0.47 -1.7 235,714 - LRK53_RS00930 0.47 -0.5 235,714 - LRK53_RS00930 0.47 +0.1 235,770 + LRK53_RS00930 0.67 +0.6 235,770 + LRK53_RS00930 0.67 +1.1 235,770 + LRK53_RS00930 0.67 -0.4 235,771 - LRK53_RS00930 0.67 -2.2 235,771 - LRK53_RS00930 0.67 -1.0 235,771 - LRK53_RS00930 0.67 -1.6 235,771 - LRK53_RS00930 0.67 -1.0 235,909 - LRK53_RS00935 0.14 -0.4 235,917 + LRK53_RS00935 0.16 -1.3 235,917 + LRK53_RS00935 0.16 +3.3 235,917 + LRK53_RS00935 0.16 -1.3 235,918 - LRK53_RS00935 0.17 +1.9 235,918 - LRK53_RS00935 0.17 -1.8 235,976 + LRK53_RS00935 0.33 -0.4 235,976 + LRK53_RS00935 0.33 -0.2 235,977 - LRK53_RS00935 0.33 -0.7 236,082 - LRK53_RS00935 0.63 +1.1 236,082 - LRK53_RS00935 0.63 -1.2
Or see this region's nucleotide sequence