Strain Fitness in Rhodanobacter sp000427505 FW510-R12 around LRK53_RS00475

Experiment: biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntLRK53_RS00465 and LRK53_RS00470 overlap by 14 nucleotidesLRK53_RS00470 and LRK53_RS00475 overlap by 1 nucleotidesLRK53_RS00475 and LRK53_RS00480 overlap by 4 nucleotides LRK53_RS00465: LRK53_RS00465 - hypothetical protein, at 102,301 to 103,248 _RS00465 LRK53_RS00470: LRK53_RS00470 - GNAT family N-acetyltransferase, at 103,235 to 104,167 _RS00470 LRK53_RS00475: LRK53_RS00475 - DegT/DnrJ/EryC1/StrS family aminotransferase, at 104,167 to 105,309 _RS00475 LRK53_RS00480: LRK53_RS00480 - O-antigen translocase, at 105,306 to 106,556 _RS00480 Position (kb) 104 105 106Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 103.253 kb on + strandat 103.253 kb on + strandat 103.254 kb on - strandat 103.331 kb on + strand, within LRK53_RS00470at 103.331 kb on + strand, within LRK53_RS00470at 103.332 kb on - strand, within LRK53_RS00470at 103.332 kb on - strand, within LRK53_RS00470at 103.332 kb on - strand, within LRK53_RS00470at 103.340 kb on + strand, within LRK53_RS00470at 103.340 kb on + strand, within LRK53_RS00470at 103.341 kb on - strand, within LRK53_RS00470at 103.457 kb on + strand, within LRK53_RS00470at 103.457 kb on + strand, within LRK53_RS00470at 103.457 kb on + strand, within LRK53_RS00470at 103.457 kb on + strand, within LRK53_RS00470at 103.532 kb on + strand, within LRK53_RS00470at 103.562 kb on + strand, within LRK53_RS00470at 103.562 kb on + strand, within LRK53_RS00470at 103.563 kb on - strand, within LRK53_RS00470at 103.563 kb on - strand, within LRK53_RS00470at 103.563 kb on - strand, within LRK53_RS00470at 103.563 kb on - strand, within LRK53_RS00470at 103.563 kb on - strand, within LRK53_RS00470at 103.614 kb on - strand, within LRK53_RS00470at 103.614 kb on - strand, within LRK53_RS00470at 103.614 kb on - strand, within LRK53_RS00470at 103.925 kb on + strand, within LRK53_RS00470at 103.925 kb on + strand, within LRK53_RS00470at 103.925 kb on + strand, within LRK53_RS00470at 103.926 kb on - strand, within LRK53_RS00470at 103.926 kb on - strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.955 kb on + strand, within LRK53_RS00470at 103.956 kb on - strand, within LRK53_RS00470at 103.956 kb on - strand, within LRK53_RS00470at 103.956 kb on - strand, within LRK53_RS00470at 103.956 kb on - strand, within LRK53_RS00470at 103.956 kb on - strand, within LRK53_RS00470at 104.031 kb on - strand, within LRK53_RS00470at 104.045 kb on + strand, within LRK53_RS00470at 104.045 kb on + strand, within LRK53_RS00470at 104.045 kb on + strand, within LRK53_RS00470at 104.045 kb on + strand, within LRK53_RS00470at 104.046 kb on - strand, within LRK53_RS00470at 104.046 kb on - strand, within LRK53_RS00470at 104.046 kb on - strand, within LRK53_RS00470at 104.117 kb on + strandat 104.117 kb on + strandat 104.117 kb on + strandat 104.117 kb on + strandat 104.117 kb on + strandat 104.117 kb on + strandat 104.117 kb on + strandat 104.118 kb on - strandat 104.118 kb on - strandat 104.118 kb on - strandat 104.118 kb on - strandat 104.118 kb on - strandat 104.118 kb on - strandat 104.151 kb on - strandat 104.151 kb on - strandat 104.290 kb on + strand, within LRK53_RS00475at 104.290 kb on + strand, within LRK53_RS00475at 104.290 kb on + strand, within LRK53_RS00475at 104.290 kb on + strand, within LRK53_RS00475at 104.290 kb on + strand, within LRK53_RS00475at 104.290 kb on + strand, within LRK53_RS00475at 104.290 kb on + strand, within LRK53_RS00475at 104.291 kb on - strand, within LRK53_RS00475at 104.291 kb on - strand, within LRK53_RS00475at 104.291 kb on - strand, within LRK53_RS00475at 104.866 kb on + strand, within LRK53_RS00475at 104.866 kb on + strand, within LRK53_RS00475at 104.866 kb on + strand, within LRK53_RS00475at 104.867 kb on - strand, within LRK53_RS00475at 104.867 kb on - strand, within LRK53_RS00475at 104.867 kb on - strand, within LRK53_RS00475at 105.137 kb on - strand, within LRK53_RS00475at 105.167 kb on - strand, within LRK53_RS00475at 105.178 kb on + strand, within LRK53_RS00475at 105.179 kb on - strand, within LRK53_RS00475at 105.179 kb on - strand, within LRK53_RS00475at 105.179 kb on - strand, within LRK53_RS00475at 105.179 kb on - strand, within LRK53_RS00475at 105.330 kb on + strandat 105.330 kb on + strandat 105.330 kb on + strandat 105.331 kb on - strandat 105.331 kb on - strandat 105.331 kb on - strandat 105.498 kb on + strand, within LRK53_RS00480at 105.498 kb on + strand, within LRK53_RS00480at 105.498 kb on + strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.499 kb on - strand, within LRK53_RS00480at 105.561 kb on + strand, within LRK53_RS00480at 105.705 kb on + strand, within LRK53_RS00480at 105.705 kb on + strand, within LRK53_RS00480at 105.705 kb on + strand, within LRK53_RS00480at 105.706 kb on - strand, within LRK53_RS00480at 105.706 kb on - strand, within LRK53_RS00480at 105.706 kb on - strand, within LRK53_RS00480at 105.706 kb on - strand, within LRK53_RS00480at 105.706 kb on - strand, within LRK53_RS00480at 105.706 kb on - strand, within LRK53_RS00480at 105.823 kb on - strand, within LRK53_RS00480at 105.900 kb on + strand, within LRK53_RS00480at 105.900 kb on + strand, within LRK53_RS00480at 105.901 kb on - strand, within LRK53_RS00480at 105.901 kb on - strand, within LRK53_RS00480at 106.095 kb on + strand, within LRK53_RS00480at 106.095 kb on + strand, within LRK53_RS00480at 106.096 kb on - strand, within LRK53_RS00480at 106.096 kb on - strand, within LRK53_RS00480at 106.096 kb on - strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.128 kb on + strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.129 kb on - strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.131 kb on + strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.132 kb on - strand, within LRK53_RS00480at 106.195 kb on - strand, within LRK53_RS00480at 106.195 kb on - strand, within LRK53_RS00480at 106.195 kb on - strand, within LRK53_RS00480at 106.195 kb on - strand, within LRK53_RS00480at 106.200 kb on + strand, within LRK53_RS00480at 106.200 kb on + strand, within LRK53_RS00480at 106.200 kb on + strand, within LRK53_RS00480at 106.200 kb on + strand, within LRK53_RS00480at 106.200 kb on + strand, within LRK53_RS00480at 106.201 kb on - strand, within LRK53_RS00480at 106.201 kb on - strand, within LRK53_RS00480at 106.201 kb on - strand, within LRK53_RS00480at 106.201 kb on - strand, within LRK53_RS00480at 106.239 kb on + strand, within LRK53_RS00480at 106.239 kb on + strand, within LRK53_RS00480at 106.239 kb on + strand, within LRK53_RS00480at 106.239 kb on + strand, within LRK53_RS00480at 106.240 kb on - strand, within LRK53_RS00480at 106.305 kb on + strand, within LRK53_RS00480at 106.306 kb on - strand, within LRK53_RS00480

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Per-strain Table

Position Strand Gene LocusTag Fraction biofilm; Day1; NLDM; Manganese (II) chloride tetrahydrate 10mM
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103,253 + -0.2
103,253 + -2.8
103,254 - +0.5
103,331 + LRK53_RS00470 0.10 -0.8
103,331 + LRK53_RS00470 0.10 +1.9
103,332 - LRK53_RS00470 0.10 -0.7
103,332 - LRK53_RS00470 0.10 +0.7
103,332 - LRK53_RS00470 0.10 +0.2
103,340 + LRK53_RS00470 0.11 +1.3
103,340 + LRK53_RS00470 0.11 -0.5
103,341 - LRK53_RS00470 0.11 -1.8
103,457 + LRK53_RS00470 0.24 -0.3
103,457 + LRK53_RS00470 0.24 -0.3
103,457 + LRK53_RS00470 0.24 +0.6
103,457 + LRK53_RS00470 0.24 -0.6
103,532 + LRK53_RS00470 0.32 -1.6
103,562 + LRK53_RS00470 0.35 +0.5
103,562 + LRK53_RS00470 0.35 -0.8
103,563 - LRK53_RS00470 0.35 -1.3
103,563 - LRK53_RS00470 0.35 -0.0
103,563 - LRK53_RS00470 0.35 +0.5
103,563 - LRK53_RS00470 0.35 -0.5
103,563 - LRK53_RS00470 0.35 -0.6
103,614 - LRK53_RS00470 0.41 +2.3
103,614 - LRK53_RS00470 0.41 -0.3
103,614 - LRK53_RS00470 0.41 +0.9
103,925 + LRK53_RS00470 0.74 -2.1
103,925 + LRK53_RS00470 0.74 -0.8
103,925 + LRK53_RS00470 0.74 -0.9
103,926 - LRK53_RS00470 0.74 -0.2
103,926 - LRK53_RS00470 0.74 -2.0
103,955 + LRK53_RS00470 0.77 -0.1
103,955 + LRK53_RS00470 0.77 -1.1
103,955 + LRK53_RS00470 0.77 -2.3
103,955 + LRK53_RS00470 0.77 +0.6
103,955 + LRK53_RS00470 0.77 -0.3
103,955 + LRK53_RS00470 0.77 -1.1
103,955 + LRK53_RS00470 0.77 -0.4
103,955 + LRK53_RS00470 0.77 +1.2
103,955 + LRK53_RS00470 0.77 -0.2
103,955 + LRK53_RS00470 0.77 -0.6
103,955 + LRK53_RS00470 0.77 -0.6
103,955 + LRK53_RS00470 0.77 +0.9
103,956 - LRK53_RS00470 0.77 +0.3
103,956 - LRK53_RS00470 0.77 -1.1
103,956 - LRK53_RS00470 0.77 -0.5
103,956 - LRK53_RS00470 0.77 -1.0
103,956 - LRK53_RS00470 0.77 +0.7
104,031 - LRK53_RS00470 0.85 +0.3
104,045 + LRK53_RS00470 0.87 -1.5
104,045 + LRK53_RS00470 0.87 +0.2
104,045 + LRK53_RS00470 0.87 +1.1
104,045 + LRK53_RS00470 0.87 +0.5
104,046 - LRK53_RS00470 0.87 +0.2
104,046 - LRK53_RS00470 0.87 -1.7
104,046 - LRK53_RS00470 0.87 +0.9
104,117 + +0.6
104,117 + -0.8
104,117 + +0.1
104,117 + -1.0
104,117 + -0.0
104,117 + -0.2
104,117 + +0.1
104,118 - +0.3
104,118 - +0.3
104,118 - +0.7
104,118 - +2.1
104,118 - -0.2
104,118 - -0.7
104,151 - +0.6
104,151 - +0.3
104,290 + LRK53_RS00475 0.11 -0.1
104,290 + LRK53_RS00475 0.11 +0.3
104,290 + LRK53_RS00475 0.11 +0.9
104,290 + LRK53_RS00475 0.11 +1.3
104,290 + LRK53_RS00475 0.11 -0.2
104,290 + LRK53_RS00475 0.11 +0.5
104,290 + LRK53_RS00475 0.11 -0.7
104,291 - LRK53_RS00475 0.11 -0.5
104,291 - LRK53_RS00475 0.11 -0.8
104,291 - LRK53_RS00475 0.11 -1.8
104,866 + LRK53_RS00475 0.61 -2.3
104,866 + LRK53_RS00475 0.61 -1.4
104,866 + LRK53_RS00475 0.61 -0.7
104,867 - LRK53_RS00475 0.61 -0.9
104,867 - LRK53_RS00475 0.61 +0.5
104,867 - LRK53_RS00475 0.61 -1.2
105,137 - LRK53_RS00475 0.85 -1.3
105,167 - LRK53_RS00475 0.87 -1.8
105,178 + LRK53_RS00475 0.88 -0.4
105,179 - LRK53_RS00475 0.89 -2.8
105,179 - LRK53_RS00475 0.89 +0.2
105,179 - LRK53_RS00475 0.89 -1.3
105,179 - LRK53_RS00475 0.89 +0.1
105,330 + +1.5
105,330 + -1.3
105,330 + -0.2
105,331 - +0.5
105,331 - +0.4
105,331 - -0.6
105,498 + LRK53_RS00480 0.15 -0.9
105,498 + LRK53_RS00480 0.15 +0.5
105,498 + LRK53_RS00480 0.15 +0.8
105,499 - LRK53_RS00480 0.15 +0.2
105,499 - LRK53_RS00480 0.15 +0.1
105,499 - LRK53_RS00480 0.15 -1.1
105,499 - LRK53_RS00480 0.15 +1.3
105,499 - LRK53_RS00480 0.15 -1.4
105,499 - LRK53_RS00480 0.15 +0.5
105,499 - LRK53_RS00480 0.15 +2.6
105,499 - LRK53_RS00480 0.15 -0.8
105,499 - LRK53_RS00480 0.15 +0.2
105,561 + LRK53_RS00480 0.20 +2.3
105,705 + LRK53_RS00480 0.32 -1.6
105,705 + LRK53_RS00480 0.32 +1.3
105,705 + LRK53_RS00480 0.32 +1.8
105,706 - LRK53_RS00480 0.32 +0.9
105,706 - LRK53_RS00480 0.32 -0.1
105,706 - LRK53_RS00480 0.32 +0.4
105,706 - LRK53_RS00480 0.32 -0.7
105,706 - LRK53_RS00480 0.32 +0.2
105,706 - LRK53_RS00480 0.32 -0.4
105,823 - LRK53_RS00480 0.41 -0.1
105,900 + LRK53_RS00480 0.47 +2.7
105,900 + LRK53_RS00480 0.47 -1.9
105,901 - LRK53_RS00480 0.48 -1.6
105,901 - LRK53_RS00480 0.48 -0.9
106,095 + LRK53_RS00480 0.63 +0.2
106,095 + LRK53_RS00480 0.63 -0.6
106,096 - LRK53_RS00480 0.63 -0.7
106,096 - LRK53_RS00480 0.63 -2.1
106,096 - LRK53_RS00480 0.63 -0.3
106,128 + LRK53_RS00480 0.66 +1.6
106,128 + LRK53_RS00480 0.66 +0.1
106,128 + LRK53_RS00480 0.66 -0.3
106,128 + LRK53_RS00480 0.66 +0.7
106,128 + LRK53_RS00480 0.66 -1.6
106,128 + LRK53_RS00480 0.66 +0.7
106,128 + LRK53_RS00480 0.66 +0.5
106,128 + LRK53_RS00480 0.66 -1.3
106,128 + LRK53_RS00480 0.66 -0.1
106,128 + LRK53_RS00480 0.66 -0.6
106,128 + LRK53_RS00480 0.66 +0.1
106,128 + LRK53_RS00480 0.66 +2.3
106,128 + LRK53_RS00480 0.66 -1.2
106,128 + LRK53_RS00480 0.66 -0.1
106,128 + LRK53_RS00480 0.66 +0.9
106,128 + LRK53_RS00480 0.66 -1.2
106,128 + LRK53_RS00480 0.66 -1.1
106,128 + LRK53_RS00480 0.66 -2.3
106,128 + LRK53_RS00480 0.66 -1.0
106,129 - LRK53_RS00480 0.66 -0.6
106,129 - LRK53_RS00480 0.66 +0.9
106,129 - LRK53_RS00480 0.66 -0.5
106,129 - LRK53_RS00480 0.66 -1.0
106,129 - LRK53_RS00480 0.66 -0.5
106,129 - LRK53_RS00480 0.66 -0.3
106,129 - LRK53_RS00480 0.66 +0.5
106,129 - LRK53_RS00480 0.66 +0.2
106,129 - LRK53_RS00480 0.66 +0.5
106,129 - LRK53_RS00480 0.66 -2.4
106,129 - LRK53_RS00480 0.66 +0.3
106,129 - LRK53_RS00480 0.66 -0.1
106,129 - LRK53_RS00480 0.66 -0.7
106,129 - LRK53_RS00480 0.66 -2.1
106,131 + LRK53_RS00480 0.66 +0.8
106,131 + LRK53_RS00480 0.66 -1.1
106,131 + LRK53_RS00480 0.66 -0.2
106,131 + LRK53_RS00480 0.66 +1.7
106,131 + LRK53_RS00480 0.66 -1.0
106,131 + LRK53_RS00480 0.66 -0.3
106,131 + LRK53_RS00480 0.66 +0.8
106,131 + LRK53_RS00480 0.66 -0.1
106,131 + LRK53_RS00480 0.66 +0.3
106,131 + LRK53_RS00480 0.66 +0.6
106,131 + LRK53_RS00480 0.66 -0.4
106,131 + LRK53_RS00480 0.66 -1.1
106,132 - LRK53_RS00480 0.66 -0.9
106,132 - LRK53_RS00480 0.66 +0.9
106,132 - LRK53_RS00480 0.66 -0.1
106,132 - LRK53_RS00480 0.66 -0.6
106,132 - LRK53_RS00480 0.66 -0.5
106,132 - LRK53_RS00480 0.66 +2.3
106,132 - LRK53_RS00480 0.66 -0.6
106,132 - LRK53_RS00480 0.66 +2.7
106,132 - LRK53_RS00480 0.66 -2.2
106,132 - LRK53_RS00480 0.66 +0.2
106,132 - LRK53_RS00480 0.66 +0.3
106,132 - LRK53_RS00480 0.66 -2.0
106,132 - LRK53_RS00480 0.66 -1.2
106,195 - LRK53_RS00480 0.71 -0.0
106,195 - LRK53_RS00480 0.71 +0.2
106,195 - LRK53_RS00480 0.71 -2.2
106,195 - LRK53_RS00480 0.71 -0.2
106,200 + LRK53_RS00480 0.71 +0.1
106,200 + LRK53_RS00480 0.71 -1.3
106,200 + LRK53_RS00480 0.71 +0.3
106,200 + LRK53_RS00480 0.71 -0.4
106,200 + LRK53_RS00480 0.71 +1.3
106,201 - LRK53_RS00480 0.72 +0.1
106,201 - LRK53_RS00480 0.72 -0.7
106,201 - LRK53_RS00480 0.72 +0.3
106,201 - LRK53_RS00480 0.72 +0.9
106,239 + LRK53_RS00480 0.75 +1.7
106,239 + LRK53_RS00480 0.75 +0.3
106,239 + LRK53_RS00480 0.75 +0.8
106,239 + LRK53_RS00480 0.75 -0.9
106,240 - LRK53_RS00480 0.75 -1.3
106,305 + LRK53_RS00480 0.80 -0.4
106,306 - LRK53_RS00480 0.80 -0.6

Or see this region's nucleotide sequence