Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS43870 and QEN71_RS43875 are separated by 4 nucleotides QEN71_RS43875 and QEN71_RS43880 are separated by 92 nucleotides QEN71_RS43880 and QEN71_RS43885 overlap by 4 nucleotides
QEN71_RS43870: QEN71_RS43870 - hypothetical protein, at 252,521 to 253,699
_RS43870
QEN71_RS43875: QEN71_RS43875 - hypothetical protein, at 253,704 to 254,177
_RS43875
QEN71_RS43880: QEN71_RS43880 - PRTRC system ThiF family protein, at 254,270 to 255,088
_RS43880
QEN71_RS43885: QEN71_RS43885 - PRTRC system protein A, at 255,085 to 255,720
_RS43885
Position (kb) 253
254
255 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 252.735 kb on + strand, within QEN71_RS43870 at 252.735 kb on + strand, within QEN71_RS43870 at 252.736 kb on - strand, within QEN71_RS43870 at 252.736 kb on - strand, within QEN71_RS43870 at 252.736 kb on - strand, within QEN71_RS43870 at 252.737 kb on + strand, within QEN71_RS43870 at 252.737 kb on + strand, within QEN71_RS43870 at 252.737 kb on + strand, within QEN71_RS43870 at 252.738 kb on - strand, within QEN71_RS43870 at 252.738 kb on - strand, within QEN71_RS43870 at 252.862 kb on + strand, within QEN71_RS43870 at 252.863 kb on - strand, within QEN71_RS43870 at 252.863 kb on - strand, within QEN71_RS43870 at 252.903 kb on + strand, within QEN71_RS43870 at 253.008 kb on + strand, within QEN71_RS43870 at 253.008 kb on + strand, within QEN71_RS43870 at 253.008 kb on + strand, within QEN71_RS43870 at 253.009 kb on - strand, within QEN71_RS43870 at 253.009 kb on - strand, within QEN71_RS43870 at 253.009 kb on - strand, within QEN71_RS43870 at 253.009 kb on - strand, within QEN71_RS43870 at 253.009 kb on - strand, within QEN71_RS43870 at 253.059 kb on - strand, within QEN71_RS43870 at 253.142 kb on + strand, within QEN71_RS43870 at 253.144 kb on - strand, within QEN71_RS43870 at 253.369 kb on - strand, within QEN71_RS43870 at 253.386 kb on + strand, within QEN71_RS43870 at 253.387 kb on - strand, within QEN71_RS43870 at 253.777 kb on + strand, within QEN71_RS43875 at 253.777 kb on + strand, within QEN71_RS43875 at 253.778 kb on - strand, within QEN71_RS43875 at 253.778 kb on - strand, within QEN71_RS43875 at 253.778 kb on - strand, within QEN71_RS43875 at 254.078 kb on - strand, within QEN71_RS43875 at 254.092 kb on + strand, within QEN71_RS43875 at 254.092 kb on + strand, within QEN71_RS43875 at 254.093 kb on - strand, within QEN71_RS43875 at 254.093 kb on - strand, within QEN71_RS43875 at 254.241 kb on + strand at 254.241 kb on + strand at 254.241 kb on + strand at 254.241 kb on + strand at 254.242 kb on - strand at 254.242 kb on - strand at 254.242 kb on - strand at 254.244 kb on - strand at 254.334 kb on + strand at 254.335 kb on - strand at 254.483 kb on - strand, within QEN71_RS43880 at 254.534 kb on - strand, within QEN71_RS43880 at 254.576 kb on + strand, within QEN71_RS43880 at 254.577 kb on - strand, within QEN71_RS43880 at 254.585 kb on + strand, within QEN71_RS43880 at 254.585 kb on + strand, within QEN71_RS43880 at 254.586 kb on - strand, within QEN71_RS43880 at 254.671 kb on - strand, within QEN71_RS43880 at 254.673 kb on + strand, within QEN71_RS43880 at 254.673 kb on + strand, within QEN71_RS43880 at 254.673 kb on + strand, within QEN71_RS43880 at 254.674 kb on - strand, within QEN71_RS43880 at 254.674 kb on - strand, within QEN71_RS43880 at 254.674 kb on - strand, within QEN71_RS43880 at 254.832 kb on - strand, within QEN71_RS43880 at 254.850 kb on + strand, within QEN71_RS43880 at 254.850 kb on + strand, within QEN71_RS43880 at 254.850 kb on + strand, within QEN71_RS43880 at 254.850 kb on + strand, within QEN71_RS43880 at 254.851 kb on - strand, within QEN71_RS43880 at 254.851 kb on - strand, within QEN71_RS43880 at 254.919 kb on + strand, within QEN71_RS43880 at 254.920 kb on - strand, within QEN71_RS43880 at 254.920 kb on - strand, within QEN71_RS43880 at 255.089 kb on - strand at 255.089 kb on - strand at 255.089 kb on - strand at 255.089 kb on - strand at 255.089 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 252,735 + QEN71_RS43870 0.18 -0.1 252,735 + QEN71_RS43870 0.18 -1.3 252,736 - QEN71_RS43870 0.18 +0.3 252,736 - QEN71_RS43870 0.18 -0.4 252,736 - QEN71_RS43870 0.18 -1.3 252,737 + QEN71_RS43870 0.18 -1.2 252,737 + QEN71_RS43870 0.18 -1.1 252,737 + QEN71_RS43870 0.18 +0.1 252,738 - QEN71_RS43870 0.18 -1.4 252,738 - QEN71_RS43870 0.18 -0.2 252,862 + QEN71_RS43870 0.29 -1.4 252,863 - QEN71_RS43870 0.29 -1.7 252,863 - QEN71_RS43870 0.29 -0.2 252,903 + QEN71_RS43870 0.32 +0.3 253,008 + QEN71_RS43870 0.41 -0.3 253,008 + QEN71_RS43870 0.41 +1.9 253,008 + QEN71_RS43870 0.41 -0.3 253,009 - QEN71_RS43870 0.41 -0.2 253,009 - QEN71_RS43870 0.41 -0.3 253,009 - QEN71_RS43870 0.41 -0.2 253,009 - QEN71_RS43870 0.41 +0.6 253,009 - QEN71_RS43870 0.41 -1.1 253,059 - QEN71_RS43870 0.46 +0.9 253,142 + QEN71_RS43870 0.53 +0.2 253,144 - QEN71_RS43870 0.53 -0.1 253,369 - QEN71_RS43870 0.72 +1.1 253,386 + QEN71_RS43870 0.73 -0.0 253,387 - QEN71_RS43870 0.73 -0.1 253,777 + QEN71_RS43875 0.15 -0.2 253,777 + QEN71_RS43875 0.15 -0.2 253,778 - QEN71_RS43875 0.16 -2.7 253,778 - QEN71_RS43875 0.16 +0.1 253,778 - QEN71_RS43875 0.16 -2.3 254,078 - QEN71_RS43875 0.79 -0.4 254,092 + QEN71_RS43875 0.82 +0.1 254,092 + QEN71_RS43875 0.82 +0.6 254,093 - QEN71_RS43875 0.82 -1.6 254,093 - QEN71_RS43875 0.82 -0.3 254,241 + -0.0 254,241 + -0.7 254,241 + -1.9 254,241 + -0.7 254,242 - -0.7 254,242 - +0.3 254,242 - +0.3 254,244 - -0.3 254,334 + -0.8 254,335 - -0.4 254,483 - QEN71_RS43880 0.26 +0.9 254,534 - QEN71_RS43880 0.32 -0.2 254,576 + QEN71_RS43880 0.37 -1.4 254,577 - QEN71_RS43880 0.37 -3.0 254,585 + QEN71_RS43880 0.38 -0.5 254,585 + QEN71_RS43880 0.38 -0.2 254,586 - QEN71_RS43880 0.39 -1.8 254,671 - QEN71_RS43880 0.49 +0.1 254,673 + QEN71_RS43880 0.49 -0.4 254,673 + QEN71_RS43880 0.49 +0.3 254,673 + QEN71_RS43880 0.49 -1.0 254,674 - QEN71_RS43880 0.49 -0.1 254,674 - QEN71_RS43880 0.49 -3.1 254,674 - QEN71_RS43880 0.49 -0.1 254,832 - QEN71_RS43880 0.69 -0.4 254,850 + QEN71_RS43880 0.71 +1.3 254,850 + QEN71_RS43880 0.71 -0.9 254,850 + QEN71_RS43880 0.71 +1.0 254,850 + QEN71_RS43880 0.71 -0.1 254,851 - QEN71_RS43880 0.71 -0.1 254,851 - QEN71_RS43880 0.71 -0.4 254,919 + QEN71_RS43880 0.79 -1.7 254,920 - QEN71_RS43880 0.79 -0.7 254,920 - QEN71_RS43880 0.79 +1.9 255,089 - +0.0 255,089 - +0.3 255,089 - -0.0 255,089 - -0.8 255,089 - -0.3
Or see this region's nucleotide sequence