Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42705

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS42700 and QEN71_RS42705 are separated by 185 nucleotidesQEN71_RS42705 and QEN71_RS42710 are separated by 217 nucleotides QEN71_RS42700: QEN71_RS42700 - IS21-like element helper ATPase IstB, at 21,891 to 22,679 _RS42700 QEN71_RS42705: QEN71_RS42705 - IS21 family transposase, at 22,865 to 23,725 _RS42705 QEN71_RS42710: QEN71_RS42710 - IS21 family transposase, at 23,943 to 25,463 _RS42710 Position (kb) 22 23 24Strain fitness (log2 ratio) -2 -1 0 1at 22.702 kb on - strandat 22.836 kb on + strandat 22.836 kb on + strandat 22.836 kb on + strandat 22.837 kb on - strandat 22.908 kb on + strandat 22.915 kb on + strandat 22.915 kb on + strandat 22.916 kb on - strandat 22.916 kb on - strandat 22.916 kb on - strandat 22.916 kb on - strandat 23.096 kb on + strand, within QEN71_RS42705at 23.097 kb on - strand, within QEN71_RS42705at 23.204 kb on + strand, within QEN71_RS42705at 23.204 kb on + strand, within QEN71_RS42705at 23.231 kb on + strand, within QEN71_RS42705at 23.231 kb on + strand, within QEN71_RS42705at 23.231 kb on + strand, within QEN71_RS42705at 23.231 kb on + strand, within QEN71_RS42705at 23.233 kb on + strand, within QEN71_RS42705at 23.233 kb on + strand, within QEN71_RS42705at 23.233 kb on + strand, within QEN71_RS42705at 23.456 kb on + strand, within QEN71_RS42705at 23.741 kb on - strandat 23.741 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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22,702 - -0.2
22,836 + -0.1
22,836 + -1.0
22,836 + +0.3
22,837 - -0.0
22,908 + +0.3
22,915 + -0.5
22,915 + -0.7
22,916 - +1.7
22,916 - -0.7
22,916 - -0.2
22,916 - +1.4
23,096 + QEN71_RS42705 0.27 -2.3
23,097 - QEN71_RS42705 0.27 -2.1
23,204 + QEN71_RS42705 0.39 -0.7
23,204 + QEN71_RS42705 0.39 -1.2
23,231 + QEN71_RS42705 0.43 -1.0
23,231 + QEN71_RS42705 0.43 -0.2
23,231 + QEN71_RS42705 0.43 -0.4
23,231 + QEN71_RS42705 0.43 +0.6
23,233 + QEN71_RS42705 0.43 -1.6
23,233 + QEN71_RS42705 0.43 -0.6
23,233 + QEN71_RS42705 0.43 +0.8
23,456 + QEN71_RS42705 0.69 -1.2
23,741 - -0.2
23,741 - +0.2

Or see this region's nucleotide sequence