Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS42585 and QEN71_RS42590 are separated by 82 nucleotides QEN71_RS42590 and QEN71_RS42595 are separated by 464 nucleotides
QEN71_RS42585: QEN71_RS42585 - hydrogenase expression/formation protein HypE, at 606,050 to 607,075
_RS42585
QEN71_RS42590: QEN71_RS42590 - isochorismatase family cysteine hydrolase, at 607,158 to 607,745
_RS42590
QEN71_RS42595: QEN71_RS42595 - GNAT family N-acetyltransferase, at 608,210 to 608,791
_RS42595
Position (kb) 607
608 Strain fitness (log2 ratio) -2
-1
0
1
2 at 606.262 kb on + strand, within QEN71_RS42585 at 606.262 kb on + strand, within QEN71_RS42585 at 606.262 kb on + strand, within QEN71_RS42585 at 606.262 kb on + strand, within QEN71_RS42585 at 606.320 kb on + strand, within QEN71_RS42585 at 606.320 kb on + strand, within QEN71_RS42585 at 606.335 kb on + strand, within QEN71_RS42585 at 606.336 kb on - strand, within QEN71_RS42585 at 606.336 kb on - strand, within QEN71_RS42585 at 606.336 kb on - strand, within QEN71_RS42585 at 606.366 kb on + strand, within QEN71_RS42585 at 606.460 kb on + strand, within QEN71_RS42585 at 606.460 kb on + strand, within QEN71_RS42585 at 606.698 kb on + strand, within QEN71_RS42585 at 606.699 kb on - strand, within QEN71_RS42585 at 606.699 kb on - strand, within QEN71_RS42585 at 606.699 kb on - strand, within QEN71_RS42585 at 606.919 kb on - strand, within QEN71_RS42585 at 606.964 kb on + strand, within QEN71_RS42585 at 606.966 kb on + strand, within QEN71_RS42585 at 606.966 kb on + strand, within QEN71_RS42585 at 606.966 kb on + strand, within QEN71_RS42585 at 606.966 kb on + strand, within QEN71_RS42585 at 606.966 kb on + strand, within QEN71_RS42585 at 606.967 kb on - strand, within QEN71_RS42585 at 606.967 kb on - strand, within QEN71_RS42585 at 606.967 kb on - strand, within QEN71_RS42585 at 606.971 kb on - strand, within QEN71_RS42585 at 606.998 kb on + strand at 607.069 kb on + strand at 607.069 kb on + strand at 607.069 kb on + strand at 607.069 kb on + strand at 607.069 kb on + strand at 607.070 kb on - strand at 607.102 kb on + strand at 607.102 kb on + strand at 607.103 kb on - strand at 607.246 kb on + strand, within QEN71_RS42590 at 607.247 kb on - strand, within QEN71_RS42590 at 607.327 kb on + strand, within QEN71_RS42590 at 607.327 kb on + strand, within QEN71_RS42590 at 607.445 kb on - strand, within QEN71_RS42590 at 607.445 kb on - strand, within QEN71_RS42590 at 607.506 kb on + strand, within QEN71_RS42590 at 607.507 kb on - strand, within QEN71_RS42590 at 607.507 kb on - strand, within QEN71_RS42590 at 607.543 kb on + strand, within QEN71_RS42590 at 607.543 kb on + strand, within QEN71_RS42590 at 607.552 kb on + strand, within QEN71_RS42590 at 607.696 kb on - strand at 607.766 kb on - strand at 607.991 kb on + strand at 607.991 kb on + strand at 607.992 kb on - strand at 608.073 kb on + strand at 608.073 kb on + strand at 608.101 kb on - strand at 608.105 kb on + strand at 608.105 kb on + strand at 608.105 kb on + strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.106 kb on - strand at 608.307 kb on + strand, within QEN71_RS42595 at 608.308 kb on - strand, within QEN71_RS42595 at 608.328 kb on + strand, within QEN71_RS42595 at 608.420 kb on + strand, within QEN71_RS42595 at 608.420 kb on + strand, within QEN71_RS42595 at 608.421 kb on - strand, within QEN71_RS42595 at 608.435 kb on - strand, within QEN71_RS42595 at 608.435 kb on - strand, within QEN71_RS42595 at 608.447 kb on + strand, within QEN71_RS42595 at 608.447 kb on + strand, within QEN71_RS42595 at 608.447 kb on + strand, within QEN71_RS42595 at 608.448 kb on - strand, within QEN71_RS42595
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 606,262 + QEN71_RS42585 0.21 -0.2 606,262 + QEN71_RS42585 0.21 +1.2 606,262 + QEN71_RS42585 0.21 +0.5 606,262 + QEN71_RS42585 0.21 -1.5 606,320 + QEN71_RS42585 0.26 +1.0 606,320 + QEN71_RS42585 0.26 +0.0 606,335 + QEN71_RS42585 0.28 -0.8 606,336 - QEN71_RS42585 0.28 -0.4 606,336 - QEN71_RS42585 0.28 -0.8 606,336 - QEN71_RS42585 0.28 +0.1 606,366 + QEN71_RS42585 0.31 -0.1 606,460 + QEN71_RS42585 0.40 +0.1 606,460 + QEN71_RS42585 0.40 -0.0 606,698 + QEN71_RS42585 0.63 -1.2 606,699 - QEN71_RS42585 0.63 +1.6 606,699 - QEN71_RS42585 0.63 +0.5 606,699 - QEN71_RS42585 0.63 +0.5 606,919 - QEN71_RS42585 0.85 -0.1 606,964 + QEN71_RS42585 0.89 +1.0 606,966 + QEN71_RS42585 0.89 -0.8 606,966 + QEN71_RS42585 0.89 +1.3 606,966 + QEN71_RS42585 0.89 -0.8 606,966 + QEN71_RS42585 0.89 +0.8 606,966 + QEN71_RS42585 0.89 +1.2 606,967 - QEN71_RS42585 0.89 -1.4 606,967 - QEN71_RS42585 0.89 -0.5 606,967 - QEN71_RS42585 0.89 +0.1 606,971 - QEN71_RS42585 0.90 -1.0 606,998 + -0.0 607,069 + -1.0 607,069 + +0.0 607,069 + -0.5 607,069 + +0.2 607,069 + +0.5 607,070 - -0.8 607,102 + +1.6 607,102 + -1.0 607,103 - -0.6 607,246 + QEN71_RS42590 0.15 -0.1 607,247 - QEN71_RS42590 0.15 -0.7 607,327 + QEN71_RS42590 0.29 +0.3 607,327 + QEN71_RS42590 0.29 -0.4 607,445 - QEN71_RS42590 0.49 +0.2 607,445 - QEN71_RS42590 0.49 -0.8 607,506 + QEN71_RS42590 0.59 -0.6 607,507 - QEN71_RS42590 0.59 -0.8 607,507 - QEN71_RS42590 0.59 +0.6 607,543 + QEN71_RS42590 0.65 -1.4 607,543 + QEN71_RS42590 0.65 -0.1 607,552 + QEN71_RS42590 0.67 -0.2 607,696 - +0.1 607,766 - -0.5 607,991 + -2.2 607,991 + -0.2 607,992 - -0.8 608,073 + +0.8 608,073 + -0.6 608,101 - -0.5 608,105 + +1.8 608,105 + -0.0 608,105 + -0.7 608,106 - -0.1 608,106 - +0.3 608,106 - -0.4 608,106 - -0.5 608,307 + QEN71_RS42595 0.17 -0.5 608,308 - QEN71_RS42595 0.17 -0.9 608,328 + QEN71_RS42595 0.20 -1.7 608,420 + QEN71_RS42595 0.36 -0.5 608,420 + QEN71_RS42595 0.36 +1.0 608,421 - QEN71_RS42595 0.36 +0.0 608,435 - QEN71_RS42595 0.39 -1.0 608,435 - QEN71_RS42595 0.39 +0.5 608,447 + QEN71_RS42595 0.41 -1.7 608,447 + QEN71_RS42595 0.41 -2.5 608,447 + QEN71_RS42595 0.41 -0.3 608,448 - QEN71_RS42595 0.41 -1.5
Or see this region's nucleotide sequence