Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42205

Experiment: LB_noSalt with Chloride 200 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntQEN71_RS42190 and QEN71_RS42195 are separated by 71 nucleotidesQEN71_RS42195 and QEN71_RS42200 overlap by 4 nucleotidesQEN71_RS42200 and QEN71_RS42205 are separated by 16 nucleotidesQEN71_RS42205 and QEN71_RS42210 are separated by 144 nucleotidesQEN71_RS42210 and QEN71_RS42215 are separated by 73 nucleotides QEN71_RS42190: QEN71_RS42190 - nitrogen fixation protein NifX, at 522,330 to 522,746 _RS42190 QEN71_RS42195: QEN71_RS42195 - CCE_0567 family metalloprotein, at 522,818 to 523,039 _RS42195 QEN71_RS42200: QEN71_RS42200 - ferredoxin III, nif-specific, at 523,036 to 523,338 _RS42200 QEN71_RS42205: QEN71_RS42205 - nitrogen fixation protein NifQ, at 523,355 to 523,927 _RS42205 QEN71_RS42210: QEN71_RS42210 - hypothetical protein, at 524,072 to 524,557 _RS42210 QEN71_RS42215: QEN71_RS42215 - 4Fe-4S dicluster domain-containing protein, at 524,631 to 524,930 _RS42215 QEN71_RS42220: QEN71_RS42220 - FAD-dependent monooxygenase, at 524,927 to 526,237 _RS42220 Position (kb) 523 524Strain fitness (log2 ratio) -2 -1 0 1 2at 522.401 kb on + strand, within QEN71_RS42190at 522.406 kb on - strand, within QEN71_RS42190at 522.406 kb on - strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.412 kb on + strand, within QEN71_RS42190at 522.413 kb on - strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.428 kb on + strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.429 kb on - strand, within QEN71_RS42190at 522.531 kb on + strand, within QEN71_RS42190at 522.709 kb on - strandat 522.709 kb on - strandat 522.713 kb on + strandat 522.714 kb on - strandat 522.733 kb on + strandat 522.733 kb on + strandat 522.734 kb on - strandat 522.734 kb on - strandat 523.061 kb on + strandat 523.178 kb on + strand, within QEN71_RS42200at 523.313 kb on - strandat 523.348 kb on + strandat 523.349 kb on - strandat 523.355 kb on - strandat 523.390 kb on - strandat 523.464 kb on + strand, within QEN71_RS42205at 523.464 kb on + strand, within QEN71_RS42205at 523.471 kb on + strand, within QEN71_RS42205at 523.617 kb on + strand, within QEN71_RS42205at 523.675 kb on + strand, within QEN71_RS42205at 523.675 kb on + strand, within QEN71_RS42205at 523.676 kb on - strand, within QEN71_RS42205at 523.676 kb on - strand, within QEN71_RS42205at 523.676 kb on - strand, within QEN71_RS42205at 523.834 kb on + strand, within QEN71_RS42205at 523.864 kb on + strand, within QEN71_RS42205at 524.025 kb on + strandat 524.025 kb on + strandat 524.025 kb on + strandat 524.026 kb on - strandat 524.026 kb on - strandat 524.026 kb on - strandat 524.026 kb on - strandat 524.054 kb on - strandat 524.054 kb on - strandat 524.054 kb on - strandat 524.074 kb on - strandat 524.147 kb on + strand, within QEN71_RS42210at 524.147 kb on + strand, within QEN71_RS42210at 524.147 kb on + strand, within QEN71_RS42210at 524.383 kb on + strand, within QEN71_RS42210at 524.394 kb on + strand, within QEN71_RS42210at 524.394 kb on + strand, within QEN71_RS42210at 524.394 kb on + strand, within QEN71_RS42210at 524.394 kb on + strand, within QEN71_RS42210at 524.394 kb on + strand, within QEN71_RS42210at 524.395 kb on - strand, within QEN71_RS42210at 524.397 kb on + strand, within QEN71_RS42210at 524.492 kb on + strand, within QEN71_RS42210at 524.492 kb on + strand, within QEN71_RS42210at 524.558 kb on + strandat 524.558 kb on + strandat 524.559 kb on - strandat 524.617 kb on + strandat 524.704 kb on - strand, within QEN71_RS42215at 524.745 kb on + strand, within QEN71_RS42215at 524.793 kb on + strand, within QEN71_RS42215at 524.794 kb on - strand, within QEN71_RS42215at 524.794 kb on - strand, within QEN71_RS42215

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
remove
522,401 + QEN71_RS42190 0.17 -1.2
522,406 - QEN71_RS42190 0.18 -1.0
522,406 - QEN71_RS42190 0.18 +0.2
522,412 + QEN71_RS42190 0.20 -0.3
522,412 + QEN71_RS42190 0.20 -0.5
522,412 + QEN71_RS42190 0.20 +0.2
522,413 - QEN71_RS42190 0.20 +1.8
522,428 + QEN71_RS42190 0.24 -0.9
522,428 + QEN71_RS42190 0.24 -1.3
522,428 + QEN71_RS42190 0.24 -1.0
522,428 + QEN71_RS42190 0.24 -0.3
522,428 + QEN71_RS42190 0.24 -0.2
522,428 + QEN71_RS42190 0.24 -0.9
522,429 - QEN71_RS42190 0.24 -0.8
522,429 - QEN71_RS42190 0.24 -0.7
522,429 - QEN71_RS42190 0.24 -0.1
522,429 - QEN71_RS42190 0.24 -1.2
522,531 + QEN71_RS42190 0.48 -0.7
522,709 - +0.8
522,709 - -0.5
522,713 + -0.1
522,714 - +0.1
522,733 + -1.2
522,733 + -1.2
522,734 - -1.0
522,734 - -1.1
523,061 + -1.3
523,178 + QEN71_RS42200 0.47 -0.6
523,313 - -0.4
523,348 + +0.6
523,349 - -0.4
523,355 - +0.3
523,390 - -1.0
523,464 + QEN71_RS42205 0.19 -0.3
523,464 + QEN71_RS42205 0.19 -1.0
523,471 + QEN71_RS42205 0.20 +0.3
523,617 + QEN71_RS42205 0.46 -0.3
523,675 + QEN71_RS42205 0.56 -0.7
523,675 + QEN71_RS42205 0.56 -0.8
523,676 - QEN71_RS42205 0.56 -1.5
523,676 - QEN71_RS42205 0.56 -0.8
523,676 - QEN71_RS42205 0.56 -0.2
523,834 + QEN71_RS42205 0.84 +0.0
523,864 + QEN71_RS42205 0.89 -1.4
524,025 + +0.1
524,025 + -2.0
524,025 + +0.5
524,026 - -0.2
524,026 - -0.6
524,026 - -0.5
524,026 - -1.5
524,054 - +0.0
524,054 - +0.1
524,054 - -0.1
524,074 - -0.7
524,147 + QEN71_RS42210 0.15 -0.6
524,147 + QEN71_RS42210 0.15 -2.3
524,147 + QEN71_RS42210 0.15 +0.6
524,383 + QEN71_RS42210 0.64 +1.0
524,394 + QEN71_RS42210 0.66 -0.5
524,394 + QEN71_RS42210 0.66 -1.0
524,394 + QEN71_RS42210 0.66 +0.2
524,394 + QEN71_RS42210 0.66 -0.4
524,394 + QEN71_RS42210 0.66 -0.1
524,395 - QEN71_RS42210 0.66 -2.4
524,397 + QEN71_RS42210 0.67 -0.1
524,492 + QEN71_RS42210 0.86 +1.0
524,492 + QEN71_RS42210 0.86 +1.2
524,558 + -1.2
524,558 + -0.1
524,559 - -0.3
524,617 + +0.2
524,704 - QEN71_RS42215 0.24 +0.2
524,745 + QEN71_RS42215 0.38 +0.6
524,793 + QEN71_RS42215 0.54 +0.4
524,794 - QEN71_RS42215 0.54 +0.5
524,794 - QEN71_RS42215 0.54 +0.7

Or see this region's nucleotide sequence