Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS42140

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS42135 and QEN71_RS42140 overlap by 33 nucleotidesQEN71_RS42140 and QEN71_RS42145 are separated by 12 nucleotidesQEN71_RS42145 and QEN71_RS42150 overlap by 8 nucleotidesQEN71_RS42150 and QEN71_RS42155 are separated by 52 nucleotidesQEN71_RS42155 and QEN71_RS42160 are separated by 7 nucleotides QEN71_RS42135: QEN71_RS42135 - LysR family transcriptional regulator, at 511,419 to 512,333 _RS42135 QEN71_RS42140: QEN71_RS42140 - ATP-grasp domain-containing protein, at 512,301 to 513,632 _RS42140 QEN71_RS42145: QEN71_RS42145 - hypothetical protein, at 513,645 to 513,827 _RS42145 QEN71_RS42150: QEN71_RS42150 - hypothetical protein, at 513,820 to 514,074 _RS42150 QEN71_RS42155: QEN71_RS42155 - hypothetical protein, at 514,127 to 514,372 _RS42155 QEN71_RS42160: QEN71_RS42160 - hypothetical protein, at 514,380 to 514,688 _RS42160 Position (kb) 512 513 514Strain fitness (log2 ratio) -3 -2 -1 0 1at 511.388 kb on + strandat 511.550 kb on - strand, within QEN71_RS42135at 511.657 kb on + strand, within QEN71_RS42135at 511.657 kb on + strand, within QEN71_RS42135at 511.657 kb on + strand, within QEN71_RS42135at 511.749 kb on + strand, within QEN71_RS42135at 511.986 kb on + strand, within QEN71_RS42135at 511.987 kb on - strand, within QEN71_RS42135at 512.126 kb on - strand, within QEN71_RS42135at 512.132 kb on + strand, within QEN71_RS42135at 512.144 kb on - strand, within QEN71_RS42135at 512.210 kb on - strand, within QEN71_RS42135at 512.303 kb on - strandat 512.334 kb on + strandat 512.335 kb on - strandat 512.499 kb on - strand, within QEN71_RS42140at 512.503 kb on + strand, within QEN71_RS42140at 512.668 kb on + strand, within QEN71_RS42140at 512.669 kb on - strand, within QEN71_RS42140at 512.738 kb on + strand, within QEN71_RS42140at 512.922 kb on + strand, within QEN71_RS42140at 512.970 kb on - strand, within QEN71_RS42140at 512.970 kb on - strand, within QEN71_RS42140at 512.970 kb on - strand, within QEN71_RS42140at 512.972 kb on - strand, within QEN71_RS42140at 512.972 kb on - strand, within QEN71_RS42140at 513.075 kb on + strand, within QEN71_RS42140at 513.123 kb on + strand, within QEN71_RS42140at 513.124 kb on - strand, within QEN71_RS42140at 513.129 kb on + strand, within QEN71_RS42140at 513.130 kb on - strand, within QEN71_RS42140at 513.130 kb on - strand, within QEN71_RS42140at 513.179 kb on + strand, within QEN71_RS42140at 513.180 kb on - strand, within QEN71_RS42140at 513.397 kb on - strand, within QEN71_RS42140at 513.457 kb on - strand, within QEN71_RS42140at 513.457 kb on - strand, within QEN71_RS42140at 513.520 kb on + strandat 513.520 kb on + strandat 513.520 kb on + strandat 513.520 kb on + strandat 513.520 kb on + strandat 513.521 kb on - strandat 513.551 kb on - strandat 513.551 kb on - strandat 513.551 kb on - strandat 513.651 kb on - strandat 513.651 kb on - strandat 513.674 kb on + strand, within QEN71_RS42145at 513.821 kb on + strandat 513.875 kb on + strand, within QEN71_RS42150at 513.875 kb on + strand, within QEN71_RS42150at 513.875 kb on + strand, within QEN71_RS42150at 513.875 kb on + strand, within QEN71_RS42150at 513.875 kb on + strand, within QEN71_RS42150at 513.903 kb on - strand, within QEN71_RS42150at 513.903 kb on - strand, within QEN71_RS42150at 513.903 kb on - strand, within QEN71_RS42150at 513.925 kb on + strand, within QEN71_RS42150at 513.925 kb on + strand, within QEN71_RS42150at 513.926 kb on - strand, within QEN71_RS42150at 513.974 kb on + strand, within QEN71_RS42150at 514.083 kb on + strandat 514.083 kb on + strandat 514.084 kb on - strandat 514.097 kb on - strandat 514.097 kb on - strandat 514.165 kb on - strand, within QEN71_RS42155at 514.165 kb on - strand, within QEN71_RS42155at 514.194 kb on - strand, within QEN71_RS42155at 514.227 kb on + strand, within QEN71_RS42155at 514.228 kb on - strand, within QEN71_RS42155at 514.240 kb on + strand, within QEN71_RS42155at 514.240 kb on + strand, within QEN71_RS42155at 514.240 kb on + strand, within QEN71_RS42155at 514.240 kb on + strand, within QEN71_RS42155at 514.240 kb on + strand, within QEN71_RS42155at 514.240 kb on + strand, within QEN71_RS42155at 514.242 kb on + strand, within QEN71_RS42155at 514.304 kb on + strand, within QEN71_RS42155at 514.304 kb on + strand, within QEN71_RS42155at 514.305 kb on - strand, within QEN71_RS42155at 514.305 kb on - strand, within QEN71_RS42155at 514.455 kb on - strand, within QEN71_RS42160at 514.456 kb on + strand, within QEN71_RS42160at 514.457 kb on - strand, within QEN71_RS42160

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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511,388 + -1.8
511,550 - QEN71_RS42135 0.14 -0.3
511,657 + QEN71_RS42135 0.26 -1.5
511,657 + QEN71_RS42135 0.26 +0.2
511,657 + QEN71_RS42135 0.26 +1.0
511,749 + QEN71_RS42135 0.36 +0.2
511,986 + QEN71_RS42135 0.62 -0.8
511,987 - QEN71_RS42135 0.62 -0.9
512,126 - QEN71_RS42135 0.77 +0.0
512,132 + QEN71_RS42135 0.78 -0.7
512,144 - QEN71_RS42135 0.79 +1.0
512,210 - QEN71_RS42135 0.86 +0.6
512,303 - -0.8
512,334 + +1.0
512,335 - -1.7
512,499 - QEN71_RS42140 0.15 -1.0
512,503 + QEN71_RS42140 0.15 -2.1
512,668 + QEN71_RS42140 0.28 -0.4
512,669 - QEN71_RS42140 0.28 +1.0
512,738 + QEN71_RS42140 0.33 -0.3
512,922 + QEN71_RS42140 0.47 +1.0
512,970 - QEN71_RS42140 0.50 +1.3
512,970 - QEN71_RS42140 0.50 +0.3
512,970 - QEN71_RS42140 0.50 -2.1
512,972 - QEN71_RS42140 0.50 -0.5
512,972 - QEN71_RS42140 0.50 -1.2
513,075 + QEN71_RS42140 0.58 -0.9
513,123 + QEN71_RS42140 0.62 -0.8
513,124 - QEN71_RS42140 0.62 -3.0
513,129 + QEN71_RS42140 0.62 -1.6
513,130 - QEN71_RS42140 0.62 -0.3
513,130 - QEN71_RS42140 0.62 -2.3
513,179 + QEN71_RS42140 0.66 -0.5
513,180 - QEN71_RS42140 0.66 -0.8
513,397 - QEN71_RS42140 0.82 -2.3
513,457 - QEN71_RS42140 0.87 -1.1
513,457 - QEN71_RS42140 0.87 -1.3
513,520 + -0.6
513,520 + +0.2
513,520 + -2.4
513,520 + +0.0
513,520 + -0.1
513,521 - +1.3
513,551 - -1.1
513,551 - -1.2
513,551 - -1.1
513,651 - -2.8
513,651 - -1.1
513,674 + QEN71_RS42145 0.16 -0.1
513,821 + -0.8
513,875 + QEN71_RS42150 0.22 -1.6
513,875 + QEN71_RS42150 0.22 -2.0
513,875 + QEN71_RS42150 0.22 +1.0
513,875 + QEN71_RS42150 0.22 -0.4
513,875 + QEN71_RS42150 0.22 -0.3
513,903 - QEN71_RS42150 0.33 -2.4
513,903 - QEN71_RS42150 0.33 -0.6
513,903 - QEN71_RS42150 0.33 -1.0
513,925 + QEN71_RS42150 0.41 -1.0
513,925 + QEN71_RS42150 0.41 -1.2
513,926 - QEN71_RS42150 0.42 -1.5
513,974 + QEN71_RS42150 0.60 -0.0
514,083 + +1.0
514,083 + -0.6
514,084 - -2.0
514,097 - -0.2
514,097 - -0.5
514,165 - QEN71_RS42155 0.15 +1.2
514,165 - QEN71_RS42155 0.15 +0.5
514,194 - QEN71_RS42155 0.27 -1.7
514,227 + QEN71_RS42155 0.41 -1.8
514,228 - QEN71_RS42155 0.41 -2.3
514,240 + QEN71_RS42155 0.46 -2.3
514,240 + QEN71_RS42155 0.46 +0.0
514,240 + QEN71_RS42155 0.46 -0.8
514,240 + QEN71_RS42155 0.46 +0.6
514,240 + QEN71_RS42155 0.46 -1.0
514,240 + QEN71_RS42155 0.46 -1.2
514,242 + QEN71_RS42155 0.47 -0.3
514,304 + QEN71_RS42155 0.72 -1.5
514,304 + QEN71_RS42155 0.72 -0.3
514,305 - QEN71_RS42155 0.72 -1.7
514,305 - QEN71_RS42155 0.72 -0.3
514,455 - QEN71_RS42160 0.24 +0.7
514,456 + QEN71_RS42160 0.25 -0.8
514,457 - QEN71_RS42160 0.25 -0.6

Or see this region's nucleotide sequence