Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39625

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39615 and QEN71_RS39620 overlap by 8 nucleotidesQEN71_RS39620 and QEN71_RS39625 are separated by 59 nucleotidesQEN71_RS39625 and QEN71_RS39630 are separated by 72 nucleotidesQEN71_RS39630 and QEN71_RS39635 are separated by 4 nucleotides QEN71_RS39615: QEN71_RS39615 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 2,276,443 to 2,277,570 _RS39615 QEN71_RS39620: QEN71_RS39620 - proline/glycine betaine ABC transporter permease, at 2,277,563 to 2,278,450 _RS39620 QEN71_RS39625: QEN71_RS39625 - FAD-binding oxidoreductase, at 2,278,510 to 2,279,781 _RS39625 QEN71_RS39630: QEN71_RS39630 - dihydrodipicolinate synthase family protein, at 2,279,854 to 2,280,747 _RS39630 QEN71_RS39635: QEN71_RS39635 - aldehyde dehydrogenase, at 2,280,752 to 2,282,251 _RS39635 Position (kb) 2278 2279 2280Strain fitness (log2 ratio) -2 -1 0 1at 2277.936 kb on + strand, within QEN71_RS39620at 2278.353 kb on + strand, within QEN71_RS39620at 2278.400 kb on - strandat 2278.400 kb on - strandat 2278.439 kb on + strandat 2278.561 kb on + strandat 2278.898 kb on + strand, within QEN71_RS39625at 2278.899 kb on - strand, within QEN71_RS39625at 2278.899 kb on - strand, within QEN71_RS39625at 2279.045 kb on + strand, within QEN71_RS39625at 2279.046 kb on - strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.049 kb on + strand, within QEN71_RS39625at 2279.050 kb on - strand, within QEN71_RS39625at 2279.052 kb on - strand, within QEN71_RS39625at 2279.838 kb on + strandat 2279.839 kb on - strandat 2279.839 kb on - strandat 2280.158 kb on + strand, within QEN71_RS39630at 2280.159 kb on - strand, within QEN71_RS39630at 2280.159 kb on - strand, within QEN71_RS39630at 2280.159 kb on - strand, within QEN71_RS39630at 2280.159 kb on - strand, within QEN71_RS39630at 2280.159 kb on - strand, within QEN71_RS39630at 2280.338 kb on + strand, within QEN71_RS39630at 2280.588 kb on - strand, within QEN71_RS39630at 2280.588 kb on - strand, within QEN71_RS39630

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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2,277,936 + QEN71_RS39620 0.42 +0.4
2,278,353 + QEN71_RS39620 0.89 +1.3
2,278,400 - -0.9
2,278,400 - -0.3
2,278,439 + -0.4
2,278,561 + -0.4
2,278,898 + QEN71_RS39625 0.31 -1.4
2,278,899 - QEN71_RS39625 0.31 -0.6
2,278,899 - QEN71_RS39625 0.31 -0.9
2,279,045 + QEN71_RS39625 0.42 +0.4
2,279,046 - QEN71_RS39625 0.42 +0.2
2,279,049 + QEN71_RS39625 0.42 -0.9
2,279,049 + QEN71_RS39625 0.42 -0.9
2,279,049 + QEN71_RS39625 0.42 -0.1
2,279,049 + QEN71_RS39625 0.42 -0.8
2,279,049 + QEN71_RS39625 0.42 -2.1
2,279,050 - QEN71_RS39625 0.42 +0.2
2,279,052 - QEN71_RS39625 0.43 +1.4
2,279,838 + -1.5
2,279,839 - +0.6
2,279,839 - +0.6
2,280,158 + QEN71_RS39630 0.34 -0.4
2,280,159 - QEN71_RS39630 0.34 +0.2
2,280,159 - QEN71_RS39630 0.34 -1.2
2,280,159 - QEN71_RS39630 0.34 -0.2
2,280,159 - QEN71_RS39630 0.34 -0.4
2,280,159 - QEN71_RS39630 0.34 -1.6
2,280,338 + QEN71_RS39630 0.54 +0.9
2,280,588 - QEN71_RS39630 0.82 +0.1
2,280,588 - QEN71_RS39630 0.82 -1.7

Or see this region's nucleotide sequence