Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS39615 and QEN71_RS39620 overlap by 8 nucleotides QEN71_RS39620 and QEN71_RS39625 are separated by 59 nucleotides QEN71_RS39625 and QEN71_RS39630 are separated by 72 nucleotides QEN71_RS39630 and QEN71_RS39635 are separated by 4 nucleotides
QEN71_RS39615: QEN71_RS39615 - glycine betaine/L-proline ABC transporter ATP-binding protein, at 2,276,443 to 2,277,570
_RS39615
QEN71_RS39620: QEN71_RS39620 - proline/glycine betaine ABC transporter permease, at 2,277,563 to 2,278,450
_RS39620
QEN71_RS39625: QEN71_RS39625 - FAD-binding oxidoreductase, at 2,278,510 to 2,279,781
_RS39625
QEN71_RS39630: QEN71_RS39630 - dihydrodipicolinate synthase family protein, at 2,279,854 to 2,280,747
_RS39630
QEN71_RS39635: QEN71_RS39635 - aldehyde dehydrogenase, at 2,280,752 to 2,282,251
_RS39635
Position (kb)
2278
2279
2280 Strain fitness (log2 ratio)
-2
-1
0
1 at 2277.936 kb on + strand, within QEN71_RS39620 at 2278.353 kb on + strand, within QEN71_RS39620 at 2278.400 kb on - strand at 2278.400 kb on - strand at 2278.439 kb on + strand at 2278.561 kb on + strand at 2278.898 kb on + strand, within QEN71_RS39625 at 2278.899 kb on - strand, within QEN71_RS39625 at 2278.899 kb on - strand, within QEN71_RS39625 at 2279.045 kb on + strand, within QEN71_RS39625 at 2279.046 kb on - strand, within QEN71_RS39625 at 2279.049 kb on + strand, within QEN71_RS39625 at 2279.049 kb on + strand, within QEN71_RS39625 at 2279.049 kb on + strand, within QEN71_RS39625 at 2279.049 kb on + strand, within QEN71_RS39625 at 2279.049 kb on + strand, within QEN71_RS39625 at 2279.050 kb on - strand, within QEN71_RS39625 at 2279.052 kb on - strand, within QEN71_RS39625 at 2279.838 kb on + strand at 2279.839 kb on - strand at 2279.839 kb on - strand at 2280.158 kb on + strand, within QEN71_RS39630 at 2280.159 kb on - strand, within QEN71_RS39630 at 2280.159 kb on - strand, within QEN71_RS39630 at 2280.159 kb on - strand, within QEN71_RS39630 at 2280.159 kb on - strand, within QEN71_RS39630 at 2280.159 kb on - strand, within QEN71_RS39630 at 2280.338 kb on + strand, within QEN71_RS39630 at 2280.588 kb on - strand, within QEN71_RS39630 at 2280.588 kb on - strand, within QEN71_RS39630
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 2,277,936 + QEN71_RS39620 0.42 +0.4 2,278,353 + QEN71_RS39620 0.89 +1.3 2,278,400 - -0.9 2,278,400 - -0.3 2,278,439 + -0.4 2,278,561 + -0.4 2,278,898 + QEN71_RS39625 0.31 -1.4 2,278,899 - QEN71_RS39625 0.31 -0.6 2,278,899 - QEN71_RS39625 0.31 -0.9 2,279,045 + QEN71_RS39625 0.42 +0.4 2,279,046 - QEN71_RS39625 0.42 +0.2 2,279,049 + QEN71_RS39625 0.42 -0.9 2,279,049 + QEN71_RS39625 0.42 -0.9 2,279,049 + QEN71_RS39625 0.42 -0.1 2,279,049 + QEN71_RS39625 0.42 -0.8 2,279,049 + QEN71_RS39625 0.42 -2.1 2,279,050 - QEN71_RS39625 0.42 +0.2 2,279,052 - QEN71_RS39625 0.43 +1.4 2,279,838 + -1.5 2,279,839 - +0.6 2,279,839 - +0.6 2,280,158 + QEN71_RS39630 0.34 -0.4 2,280,159 - QEN71_RS39630 0.34 +0.2 2,280,159 - QEN71_RS39630 0.34 -1.2 2,280,159 - QEN71_RS39630 0.34 -0.2 2,280,159 - QEN71_RS39630 0.34 -0.4 2,280,159 - QEN71_RS39630 0.34 -1.6 2,280,338 + QEN71_RS39630 0.54 +0.9 2,280,588 - QEN71_RS39630 0.82 +0.1 2,280,588 - QEN71_RS39630 0.82 -1.7
Or see this region's nucleotide sequence