Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS39060

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS39055 and QEN71_RS39060 are separated by 24 nucleotidesQEN71_RS39060 and QEN71_RS39065 are separated by 170 nucleotides QEN71_RS39055: QEN71_RS39055 - benzoate 1,2-dioxygenase electron transfer component BenC, at 2,140,381 to 2,143,173 _RS39055 QEN71_RS39060: QEN71_RS39060 - helix-turn-helix domain-containing protein, at 2,143,198 to 2,144,133 _RS39060 QEN71_RS39065: QEN71_RS39065 - ATP-binding protein, at 2,144,304 to 2,146,370 _RS39065 Position (kb) 2143 2144 2145Strain fitness (log2 ratio) -2 -1 0 1at 2142.464 kb on - strand, within QEN71_RS39055at 2142.535 kb on + strand, within QEN71_RS39055at 2142.878 kb on + strand, within QEN71_RS39055at 2143.068 kb on + strandat 2143.068 kb on + strandat 2143.099 kb on + strandat 2143.304 kb on + strand, within QEN71_RS39060at 2143.305 kb on - strand, within QEN71_RS39060at 2143.962 kb on - strand, within QEN71_RS39060at 2144.144 kb on - strandat 2144.154 kb on - strandat 2144.251 kb on - strandat 2144.334 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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2,142,464 - QEN71_RS39055 0.75 +0.0
2,142,535 + QEN71_RS39055 0.77 +0.8
2,142,878 + QEN71_RS39055 0.89 +0.6
2,143,068 + -0.1
2,143,068 + -2.6
2,143,099 + -0.4
2,143,304 + QEN71_RS39060 0.11 -1.4
2,143,305 - QEN71_RS39060 0.11 -0.6
2,143,962 - QEN71_RS39060 0.82 -1.6
2,144,144 - +0.2
2,144,154 - +0.4
2,144,251 - -1.4
2,144,334 + -0.4

Or see this region's nucleotide sequence