Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS38535

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS38530 and QEN71_RS38535 overlap by 11 nucleotidesQEN71_RS38535 and QEN71_RS38540 are separated by 166 nucleotidesQEN71_RS38540 and QEN71_RS38545 are separated by 42 nucleotides QEN71_RS38530: QEN71_RS38530 - AMP-binding protein, at 2,029,042 to 2,030,574 _RS38530 QEN71_RS38535: QEN71_RS38535 - acyl-CoA dehydrogenase, at 2,030,564 to 2,031,700 _RS38535 QEN71_RS38540: QEN71_RS38540 - flavin reductase family protein, at 2,031,867 to 2,032,517 _RS38540 QEN71_RS38545: QEN71_RS38545 - MFS transporter, at 2,032,560 to 2,033,867 _RS38545 Position (kb) 2030 2031 2032Strain fitness (log2 ratio) -2 -1 0 1at 2029.691 kb on + strand, within QEN71_RS38530at 2029.799 kb on + strand, within QEN71_RS38530at 2030.161 kb on - strand, within QEN71_RS38530at 2030.161 kb on - strand, within QEN71_RS38530at 2030.161 kb on - strand, within QEN71_RS38530at 2030.249 kb on + strand, within QEN71_RS38530at 2030.340 kb on + strand, within QEN71_RS38530at 2030.443 kb on + strandat 2030.700 kb on + strand, within QEN71_RS38535at 2030.700 kb on + strand, within QEN71_RS38535at 2030.717 kb on + strand, within QEN71_RS38535at 2030.718 kb on - strand, within QEN71_RS38535at 2031.240 kb on + strand, within QEN71_RS38535at 2031.367 kb on - strand, within QEN71_RS38535at 2031.485 kb on - strand, within QEN71_RS38535at 2031.485 kb on - strand, within QEN71_RS38535at 2031.503 kb on + strand, within QEN71_RS38535at 2031.568 kb on - strand, within QEN71_RS38535at 2031.568 kb on - strand, within QEN71_RS38535at 2031.704 kb on + strandat 2031.766 kb on - strandat 2031.983 kb on - strand, within QEN71_RS38540at 2032.199 kb on + strand, within QEN71_RS38540at 2032.200 kb on - strand, within QEN71_RS38540at 2032.200 kb on - strand, within QEN71_RS38540at 2032.540 kb on + strandat 2032.540 kb on + strandat 2032.541 kb on - strandat 2032.606 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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2,029,691 + QEN71_RS38530 0.42 +0.9
2,029,799 + QEN71_RS38530 0.49 -1.7
2,030,161 - QEN71_RS38530 0.73 +1.5
2,030,161 - QEN71_RS38530 0.73 +0.4
2,030,161 - QEN71_RS38530 0.73 -0.7
2,030,249 + QEN71_RS38530 0.79 -0.8
2,030,340 + QEN71_RS38530 0.85 -0.4
2,030,443 + +0.3
2,030,700 + QEN71_RS38535 0.12 -1.1
2,030,700 + QEN71_RS38535 0.12 -0.5
2,030,717 + QEN71_RS38535 0.13 +0.1
2,030,718 - QEN71_RS38535 0.14 -0.8
2,031,240 + QEN71_RS38535 0.59 +0.8
2,031,367 - QEN71_RS38535 0.71 -1.0
2,031,485 - QEN71_RS38535 0.81 +0.1
2,031,485 - QEN71_RS38535 0.81 -1.9
2,031,503 + QEN71_RS38535 0.83 +0.7
2,031,568 - QEN71_RS38535 0.88 +0.3
2,031,568 - QEN71_RS38535 0.88 +0.2
2,031,704 + +0.1
2,031,766 - -1.7
2,031,983 - QEN71_RS38540 0.18 +0.2
2,032,199 + QEN71_RS38540 0.51 +0.0
2,032,200 - QEN71_RS38540 0.51 -1.7
2,032,200 - QEN71_RS38540 0.51 -1.7
2,032,540 + -0.4
2,032,540 + -0.1
2,032,541 - +0.9
2,032,606 + -0.8

Or see this region's nucleotide sequence