Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS37480

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS37475 and QEN71_RS37480 overlap by 4 nucleotidesQEN71_RS37480 and QEN71_RS37485 overlap by 4 nucleotides QEN71_RS37475: QEN71_RS37475 - c-type cytochrome, at 1,782,559 to 1,783,848 _RS37475 QEN71_RS37480: QEN71_RS37480 - (2Fe-2S)-binding protein, at 1,783,845 to 1,784,333 _RS37480 QEN71_RS37485: QEN71_RS37485 - molybdopterin-dependent oxidoreductase, at 1,784,330 to 1,786,600 _RS37485 Position (kb) 1783 1784 1785Strain fitness (log2 ratio) -2 -1 0 1at 1782.934 kb on + strand, within QEN71_RS37475at 1782.935 kb on - strand, within QEN71_RS37475at 1782.937 kb on - strand, within QEN71_RS37475at 1782.951 kb on + strand, within QEN71_RS37475at 1782.951 kb on + strand, within QEN71_RS37475at 1782.952 kb on - strand, within QEN71_RS37475at 1782.952 kb on - strand, within QEN71_RS37475at 1783.321 kb on + strand, within QEN71_RS37475at 1783.321 kb on + strand, within QEN71_RS37475at 1783.322 kb on - strand, within QEN71_RS37475at 1783.322 kb on - strand, within QEN71_RS37475at 1783.322 kb on - strand, within QEN71_RS37475at 1783.322 kb on - strand, within QEN71_RS37475at 1783.432 kb on + strand, within QEN71_RS37475at 1783.432 kb on + strand, within QEN71_RS37475at 1783.433 kb on - strand, within QEN71_RS37475at 1783.433 kb on - strand, within QEN71_RS37475at 1783.433 kb on - strand, within QEN71_RS37475at 1783.702 kb on + strand, within QEN71_RS37475at 1783.703 kb on - strand, within QEN71_RS37475at 1783.703 kb on - strand, within QEN71_RS37475at 1783.727 kb on - strandat 1783.759 kb on + strandat 1783.774 kb on + strandat 1783.911 kb on + strand, within QEN71_RS37480at 1783.912 kb on - strand, within QEN71_RS37480at 1784.256 kb on - strand, within QEN71_RS37480at 1785.011 kb on + strand, within QEN71_RS37485at 1785.011 kb on + strand, within QEN71_RS37485at 1785.012 kb on - strand, within QEN71_RS37485at 1785.138 kb on - strand, within QEN71_RS37485

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,782,934 + QEN71_RS37475 0.29 +0.2
1,782,935 - QEN71_RS37475 0.29 -0.7
1,782,937 - QEN71_RS37475 0.29 -0.2
1,782,951 + QEN71_RS37475 0.30 -1.7
1,782,951 + QEN71_RS37475 0.30 -0.2
1,782,952 - QEN71_RS37475 0.30 -1.3
1,782,952 - QEN71_RS37475 0.30 -1.0
1,783,321 + QEN71_RS37475 0.59 -1.1
1,783,321 + QEN71_RS37475 0.59 -1.2
1,783,322 - QEN71_RS37475 0.59 -0.2
1,783,322 - QEN71_RS37475 0.59 -1.0
1,783,322 - QEN71_RS37475 0.59 +1.2
1,783,322 - QEN71_RS37475 0.59 -0.2
1,783,432 + QEN71_RS37475 0.68 -0.8
1,783,432 + QEN71_RS37475 0.68 -0.6
1,783,433 - QEN71_RS37475 0.68 -2.5
1,783,433 - QEN71_RS37475 0.68 -0.2
1,783,433 - QEN71_RS37475 0.68 -0.1
1,783,702 + QEN71_RS37475 0.89 -0.9
1,783,703 - QEN71_RS37475 0.89 -0.6
1,783,703 - QEN71_RS37475 0.89 -0.3
1,783,727 - -1.5
1,783,759 + -0.2
1,783,774 + -2.3
1,783,911 + QEN71_RS37480 0.13 -0.2
1,783,912 - QEN71_RS37480 0.14 -0.4
1,784,256 - QEN71_RS37480 0.84 -1.2
1,785,011 + QEN71_RS37485 0.30 -0.5
1,785,011 + QEN71_RS37485 0.30 -0.1
1,785,012 - QEN71_RS37485 0.30 -1.0
1,785,138 - QEN71_RS37485 0.36 -1.3

Or see this region's nucleotide sequence