Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36855

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36850 and QEN71_RS36855 are separated by 2 nucleotidesQEN71_RS36855 and QEN71_RS36860 are separated by 82 nucleotidesQEN71_RS36860 and QEN71_RS36865 are separated by 85 nucleotidesQEN71_RS36865 and QEN71_RS36870 are separated by 59 nucleotides QEN71_RS36850: QEN71_RS36850 - type III secretion protein, at 1,644,850 to 1,646,028 _RS36850 QEN71_RS36855: QEN71_RS36855 - type III secretion protein, at 1,646,031 to 1,646,273 _RS36855 QEN71_RS36860: QEN71_RS36860 - hypothetical protein, at 1,646,356 to 1,646,577 _RS36860 QEN71_RS36865: QEN71_RS36865 - CesT family type III secretion system chaperone, at 1,646,663 to 1,647,118 _RS36865 QEN71_RS36870: QEN71_RS36870 - MEKHLA domain-containing protein, at 1,647,178 to 1,647,636 _RS36870 Position (kb) 1646 1647Strain fitness (log2 ratio) -2 -1 0 1at 1645.120 kb on - strand, within QEN71_RS36850at 1645.686 kb on + strand, within QEN71_RS36850at 1645.756 kb on - strand, within QEN71_RS36850at 1645.804 kb on + strand, within QEN71_RS36850at 1645.837 kb on + strand, within QEN71_RS36850at 1646.019 kb on - strandat 1646.034 kb on + strandat 1646.034 kb on + strandat 1646.035 kb on - strandat 1646.208 kb on + strand, within QEN71_RS36855at 1646.209 kb on - strand, within QEN71_RS36855at 1646.305 kb on + strandat 1646.575 kb on + strandat 1646.646 kb on + strandat 1647.146 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,645,120 - QEN71_RS36850 0.23 +0.7
1,645,686 + QEN71_RS36850 0.71 +0.9
1,645,756 - QEN71_RS36850 0.77 -0.7
1,645,804 + QEN71_RS36850 0.81 -0.6
1,645,837 + QEN71_RS36850 0.84 -2.0
1,646,019 - +0.1
1,646,034 + +0.8
1,646,034 + -0.6
1,646,035 - -1.4
1,646,208 + QEN71_RS36855 0.73 -1.5
1,646,209 - QEN71_RS36855 0.73 -0.2
1,646,305 + -0.7
1,646,575 + +0.1
1,646,646 + -0.5
1,647,146 - -1.1

Or see this region's nucleotide sequence