Strain Fitness in Paraburkholderia sabiae LMG 24235 around QEN71_RS36835

Experiment: LB_noSalt with Chloride 200 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntQEN71_RS36830 and QEN71_RS36835 overlap by 23 nucleotidesQEN71_RS36835 and QEN71_RS36840 are separated by 29 nucleotidesQEN71_RS36840 and QEN71_RS36845 overlap by 4 nucleotides QEN71_RS36830: QEN71_RS36830 - type III secretion system cytoplasmic ring protein SctQ, at 1,641,676 to 1,642,884 _RS36830 QEN71_RS36835: QEN71_RS36835 - type III secretion system export apparatus subunit SctR, at 1,642,862 to 1,643,518 _RS36835 QEN71_RS36840: QEN71_RS36840 - type III secretion system export apparatus subunit SctS, at 1,643,548 to 1,643,811 _RS36840 QEN71_RS36845: QEN71_RS36845 - hypothetical protein, at 1,643,808 to 1,644,743 _RS36845 Position (kb) 1642 1643 1644Strain fitness (log2 ratio) -1 0 1at 1642.167 kb on + strand, within QEN71_RS36830at 1642.268 kb on + strand, within QEN71_RS36830at 1642.452 kb on - strand, within QEN71_RS36830at 1642.466 kb on + strand, within QEN71_RS36830at 1642.509 kb on - strand, within QEN71_RS36830at 1642.842 kb on - strandat 1642.861 kb on + strandat 1642.955 kb on + strand, within QEN71_RS36835at 1642.955 kb on + strand, within QEN71_RS36835at 1643.060 kb on + strand, within QEN71_RS36835at 1643.602 kb on + strand, within QEN71_RS36840at 1643.602 kb on + strand, within QEN71_RS36840

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Per-strain Table

Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM
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1,642,167 + QEN71_RS36830 0.41 +0.3
1,642,268 + QEN71_RS36830 0.49 +0.1
1,642,452 - QEN71_RS36830 0.64 +1.1
1,642,466 + QEN71_RS36830 0.65 +0.0
1,642,509 - QEN71_RS36830 0.69 -0.0
1,642,842 - +0.5
1,642,861 + -0.6
1,642,955 + QEN71_RS36835 0.14 -1.4
1,642,955 + QEN71_RS36835 0.14 -0.7
1,643,060 + QEN71_RS36835 0.30 +0.0
1,643,602 + QEN71_RS36840 0.20 -0.7
1,643,602 + QEN71_RS36840 0.20 -1.0

Or see this region's nucleotide sequence