Experiment: LB_noSalt with Chloride 200 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt QEN71_RS36355 and QEN71_RS36360 are separated by 192 nucleotides QEN71_RS36360 and QEN71_RS36365 are separated by 62 nucleotides QEN71_RS36365 and QEN71_RS36370 are separated by 39 nucleotides QEN71_RS36370 and QEN71_RS36375 are separated by 19 nucleotides
QEN71_RS36355: QEN71_RS36355 - LysR family transcriptional regulator, at 1,539,230 to 1,540,135
_RS36355
QEN71_RS36360: QEN71_RS36360 - lysine 2,3-aminomutase, at 1,540,328 to 1,541,734
_RS36360
QEN71_RS36365: QEN71_RS36365 - ferredoxin family protein, at 1,541,797 to 1,542,138
_RS36365
QEN71_RS36370: QEN71_RS36370 - DUF1330 domain-containing protein, at 1,542,178 to 1,542,471
_RS36370
QEN71_RS36375: QEN71_RS36375 - Ldh family oxidoreductase, at 1,542,491 to 1,543,471
_RS36375
Position (kb) 1540
1541
1542 Strain fitness (log2 ratio) -2
-1
0
1
2 at 1539.331 kb on - strand, within QEN71_RS36355 at 1539.427 kb on + strand, within QEN71_RS36355 at 1539.474 kb on + strand, within QEN71_RS36355 at 1539.629 kb on + strand, within QEN71_RS36355 at 1539.641 kb on - strand, within QEN71_RS36355 at 1539.641 kb on - strand, within QEN71_RS36355 at 1539.657 kb on + strand, within QEN71_RS36355 at 1539.658 kb on - strand, within QEN71_RS36355 at 1539.658 kb on - strand, within QEN71_RS36355 at 1539.887 kb on - strand, within QEN71_RS36355 at 1539.896 kb on + strand, within QEN71_RS36355 at 1539.931 kb on - strand, within QEN71_RS36355 at 1539.931 kb on - strand, within QEN71_RS36355 at 1539.941 kb on + strand, within QEN71_RS36355 at 1539.996 kb on + strand, within QEN71_RS36355 at 1539.996 kb on + strand, within QEN71_RS36355 at 1540.168 kb on + strand at 1540.199 kb on - strand at 1540.312 kb on + strand at 1540.473 kb on - strand, within QEN71_RS36360 at 1540.524 kb on - strand, within QEN71_RS36360 at 1540.731 kb on - strand, within QEN71_RS36360 at 1541.127 kb on - strand, within QEN71_RS36360 at 1541.278 kb on - strand, within QEN71_RS36360 at 1541.301 kb on - strand, within QEN71_RS36360 at 1541.804 kb on - strand at 1541.862 kb on + strand, within QEN71_RS36365 at 1542.105 kb on - strand at 1542.377 kb on + strand, within QEN71_RS36370 at 1542.411 kb on - strand, within QEN71_RS36370 at 1542.516 kb on + strand at 1542.517 kb on - strand at 1542.577 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction LB_noSalt with Chloride 200 mM remove 1,539,331 - QEN71_RS36355 0.11 +0.6 1,539,427 + QEN71_RS36355 0.22 +0.3 1,539,474 + QEN71_RS36355 0.27 -0.2 1,539,629 + QEN71_RS36355 0.44 +0.1 1,539,641 - QEN71_RS36355 0.45 -1.8 1,539,641 - QEN71_RS36355 0.45 -1.9 1,539,657 + QEN71_RS36355 0.47 +1.1 1,539,658 - QEN71_RS36355 0.47 -0.4 1,539,658 - QEN71_RS36355 0.47 +0.3 1,539,887 - QEN71_RS36355 0.73 -0.2 1,539,896 + QEN71_RS36355 0.74 +0.1 1,539,931 - QEN71_RS36355 0.77 +0.4 1,539,931 - QEN71_RS36355 0.77 +0.6 1,539,941 + QEN71_RS36355 0.78 -0.5 1,539,996 + QEN71_RS36355 0.85 -0.4 1,539,996 + QEN71_RS36355 0.85 -1.0 1,540,168 + -0.3 1,540,199 - -0.3 1,540,312 + +1.7 1,540,473 - QEN71_RS36360 0.10 +0.8 1,540,524 - QEN71_RS36360 0.14 -0.4 1,540,731 - QEN71_RS36360 0.29 -0.9 1,541,127 - QEN71_RS36360 0.57 +1.5 1,541,278 - QEN71_RS36360 0.68 -0.7 1,541,301 - QEN71_RS36360 0.69 -1.1 1,541,804 - +1.7 1,541,862 + QEN71_RS36365 0.19 +0.7 1,542,105 - -0.2 1,542,377 + QEN71_RS36370 0.68 +0.6 1,542,411 - QEN71_RS36370 0.79 +0.3 1,542,516 + +0.2 1,542,517 - +1.9 1,542,577 + -0.7
Or see this region's nucleotide sequence